ID:

dsi_17287

 Coordinate:

3l:3012376-3012525 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.1 -4.1 -4.1

Flybase annnotation

three_prime_UTR [3l_3011913_3012375_+]; exon [3l_3011694_3012375_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAATTGTACATAAATTATAAAATTTTATTAGTGTTAATCGCGAACATCAAATGATTTGTAAGCAACTGCAGCTAAAAAGTGGTGCTGTGTGCCAGCAGCCGACCAAACCTTGCGGAATCCGTTCCATAATTCCACTTTCTGTAATGCAAGCAAGCAATGGACTAAACCAAAAATTCTATCTGTAATCGTAATGATAAACATTAAGGACAAAATGAGATTTATTGGCAATTTCTGACGAAAATTTCCCACA
******************************************************************************************************************................(((((((.((........)).)))...))))...................................****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M025
embryo
........................................................................................................................................................................................................TTAAGGACAAAATGAGATTTATTGGC........................ 26 0 1 5.00 5 2 2 1 0 0 0 0 0 0 0 0 0
..............................................TCAAATGATTTGTAAGCAACTGCAGC.................................................................................................................................................................................. 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAAGGACAAAATGAGATTTATTGGC........................ 25 0 1 3.00 3 0 0 1 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................TGAGATTTATTGGCAATTTCTGACGAAAAT........ 30 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGGACAAAATGAGATTTATTGGCA....................... 25 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................AAATTCTATCTGTAATCGTAATGATA...................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................GAATCCGTTCCATAATTCCAC................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................TAAACATTAAGGACAAAATGAGATT............................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTAAACCAAAAATTCTATCTGTAATCGT............................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................ATCAAATGATTTGTAAGCAACTGCAGC.................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................GCAATGGACTAAACCAAAAATTCTATC...................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TAAGGACAAAATGAGATTTATTGG......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AATGAGATTTATTGGCAATTTCTGACGA............ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................AAAAATTCTATCTGTAATCGTAATGATA...................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGTAATCGTAATGATAAACATTAAGGA........................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGATAAACATTAAGGACAAAATGAGATT............................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTATTGGCAATTTCTGACGAAAATT....... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TCTATCTGTAATCGTAATGATA...................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................TTGTAAGCAACTGCAGCTAAAAAGTGG........................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAAGGACAAAATGAGATTTATTGGCAAT..................... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................TAAACATTAAGGACAAAATGAGATTTAT............................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTCTATCTGTAATCGTAATGATAAACA.................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................AAATTTTATTAGTGTTAATCGCGAACA............................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TCTGTAATCGTAATGATAAACATTAAGGACA......................................... 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CGATAAACATTAAGGACAAAATGAGATTT.............................. 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGATAAACATTAAGGACAAAATGAGAT................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTCTGTAATGCAAGCAAGCAATGGA......................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AAGGACAAAATGAGATTTATTGGC........................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTAAGGACAAAATGAGATTTATTGGCAAT..................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGATTTATTGGCAATTTCTGACGAAAATT....... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...................................................TGATTTGTAAGCAACTGCAGCTAAAAAG........................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
TAATTGTACGTATTTTATAAAATT.................................................................................................................................................................................................................................. 24 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................ACTCTGTGCCAGCAGCCG..................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................TAAAGCAAGGAAGCATTGGA......................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................ACTTGGGGAATCCGTTC.............................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................AACAACGGACTAAACTAAAAA............................................................................. 21 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................TAAGGGCGAACATCAAA....................................................................................................................................................................................................... 17 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................AATGATATGTATGCAACTTC..................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................GAAACCTAGCAATGGACT....................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................GCAGTTAAAAGGTGTTGCTG................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATTAACATGTATTTAATATTTTAAAATAATCACAATTAGCGCTTGTAGTTTACTAAACATTCGTTGACGTCGATTTTTCACCACGACACACGGTCGTCGGCTGGTTTGGAACGCCTTAGGCAAGGTATTAAGGTGAAAGACATTACGTTCGTTCGTTACCTGATTTGGTTTTTAAGATAGACATTAGCATTACTATTTGTAATTCCTGTTTTACTCTAAATAACCGTTAAAGACTGCTTTTAAAGGGTGT
******************************************************................(((((((.((........)).)))...))))...................................****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR902008
ovaries
 O002
Head
 M053
female body
 M025
embryo
 SRR618934
dsim w501 ovaries
................................................................................................TCGGCTGGTTTGGAACGCCTT..................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................GCTGGTTTGGAACGCCTTA.................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................TCGTTTTTAACATAGGCATTAG............................................................... 22 3 4 0.25 1 0 0 1 0 0 0 0
.........................................................................................................TTGGAACGGCTTAGCCAA............................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................................CGTGGACGACTGCTTTTAAA...... 20 3 9 0.11 1 1 0 0 0 0 0 0
...................TTTTAAATCGTCACAATTAG................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 1 0 0
...........................................................................................................................................................CTGCCAGATTTGGTTTTT............................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................ACTGTTAAAGACTGTTTTAAAAG..... 23 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:3012326-3012575 + dsi_17287 TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAC-CAAACCTTGCGGAA---TCCG----TTCCA----TAATTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAAACATTAAGGACAAA----------ATGAGA-TTTATTGGCAA-TTTCTGA------CGA---------AA-ATTT------CCCACA----------------------------------
droSec2 scaffold_2:3147797-3148046 + TAATTGTACATAAGTTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAC-CAAACCTTGCGGAA---TCCG----TTCCA----TAATTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAAACATTAAGGACAAA----------ATGAGA-TTTATTGGCAA-TTTCTGA------CGA---------AA-ATTT------CCCACA----------------------------------
dm3 chr3L:3154178-3154427 + TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGACACAAACCTTGCGGAA---TCCG----CTCCA----TA-TTCC----AC--------------TTTTTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAAACATTAAGGACAAA----------ATGAGA-TTTATTGGCAA-TTTCTGG------CGA---------AA-ATTT------CCCACA----------------------------------
droEre2 scaffold_4784:3163231-3163479 + TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATAAAATGATTTGTAA--GC---AA----TTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACGAAACCAA-------AAAT-TCTACCTGTAATC-GT--AATGATAAACATTAAGGACGAA----------ATGAGA-TTTATTGGCAA-TTTCTGG------CAT---------AA-ATTC------CCCACA----------------------------------
droYak3 3L:8787526-8787778 - TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATAAAATGATTTGTAA--GC---AA----TTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATTTGTAATC-GT--AATGCTAAACATTAAGGACGAA----------ATGAGA-TTTATTGGCAA-TTTCTGG------CAAAA-----A-AAAATTC------CCCACA----------------------------------
droEug1 scf7180000409466:877949-878200 + TAAATGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC-A-AA----CTGCAGCTA-----------------------------------------------------------------------AA-----------AGTGGTGCTG--TGT----------GCTAGCAGCCAAT-CAAACCTTTCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCTGA--CATGCAATCGACGAAACCAA-------AAAT-TCAATCTGTAATC-AT--AATGATAAACTTTAAGGACAAA----------ATGAGA-TTTATTGGTAAATTTCTGG------AA--------A-CA-ATTTC-----CCCACA----------------------------------
droBia1 scf7180000302428:2501917-2502179 + TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AA----CTGCAGCTA-----------------------------------------------------------------------AAAACAAAAAAAGAGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCAAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATC-AT--A-CGATAAACTTTAAGGACAAA----------ATGAGA-TTTATTGGCAATTTTCTGG------AA--------ACAA-ATTTC----CCCCACA----------------------------------
droTak1 scf7180000415378:249219-249484 - TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AA----ATGCAGCTA-----------------------------------------------------------------------AAAAGA-------AAAGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCAAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATCTGT--AATGATAAACTTTAAGGACAAA----------ATGAGA-TTTATTGGCAAATTTCCGGTATATACAA---------AA-ATTC-AAAAGCCCACA----------------------------------
droEle1 scf7180000491249:2133832-2134106 - TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AACCAACTGCAGCTA-----------------------------------------------------------------------AAAAAAGAAAAAAAGTGGTGCTGTGTGT----------GCCAGCAGCCGAA-CAAACTCTGCGGAATCATCCG----TTCCA----TA-TTCC----ACT-------------TTTTTGTAATGCGAACACAAGCAATGGACGAAACCAA-------AAAT-TTTATCTGTAATC-GTATAATGATAAATGTTAAGGACAAA----------ATGAGA-TTTATTGGCACATTTCTGG------AA--------ACAA-ATTT------CCC-GA----------------------------------
droRho1 scf7180000777063:104533-104782 - TAACTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATGAAATGATTTGTA-AAGC---AA----CTGCAGCTA-----------------------------------------------------------------------AA-----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAA-CAAACCTTGCGGTA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCGAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAATTGTTAAGGACAAA----------ATGAGA-TTTATTGGCAAATTTCTGG------AAA---------AA-ATTT------CCCACA----------------------------------
droFic1 scf7180000454105:1468115-1468373 + TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AA----CTGCAGCTA-----------------------------------------------------------------------A------------AGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCGCGAGGAA---TCCG----CTCC-----TA-TTCC----AC--------------TTTCTGTAATGCGAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATACTAAATATTAAGGACACC----------ATGAGA-TTTATTGGCGA-TTTCTGA------AC----------AC-ATTTC-----CCCACATCCACATCC-------------------CG---G
droKik1 scf7180000302577:1336191-1336399 + TAAATGTACATAAATTAT--------ACAATTTTATATTAGTGTTA--A---------TC-CGAAGCATGCAACAT--AATGATTTGTA-AAGC-G-AA----CTGCAGCCA-----------------------------------------------------------------------AAA----------CGTGGTGCCG--G----------------------AAT-CAAACCTTGCGGAAT-ATCTG----TTCCA----TA-A--------------------------------TCCAAT--CAAGCAATGGACGAAACCAA-------AAAT-TCAAACTGTAATT-TT--AATT----------------AAATAAGAACCCGTGTAATTTCATTGGCAA-CT----------------------------------------------------------------------------
droAna3 scaffold_13337:8962004-8962371 - TATTTGTATATAAATAAT--------AGAATTTT--ATTAGGCTTA--AAATCTAAAATC-CG-AA-------CATTTAATGATT-GTA-CA-CAAAAA----CTACTGGTATCAAAAAAAAAAAAAACAAAAAACGTATAAAA-------------TA---GAAAAGAAAAAAAATGGATAAAAA----------TGTGGTGCTG--TGT----------GCCAGCAGCTGAT-CAAACCTTCCGGAA---TTAGAGTATTCCACGAGTA-TGCC----ACTC------------TTTTTGTAATTTGAA--CAAGCAATGGACGAAACCAAAAACCAAAAAT-TGTAATTTTAATT-GT--AATTGTAAATGTTAAGAACG-A----------ATGAGA-TTTATCGGCAACCGTTTGG------CTTGGTTTTAGCAA-TTTT------TCAACG---AGATTTTAAATGATTTAAATGAACGAA---G
droBip1 scf7180000395984:12190-12545 - TATTTGTATATAAATTAT--------AGAATTTT--ATTAGGGTTATAA---------TCCGA-AA-------CATTTAATGATTTGTA-CA-CAA-AA----CTAATGGTA-----------AAAAACA---AACGTA-AAAATATGGATAAAAAATAGAAGAAAACAAAAAAAAAAGATAAAAA----------TGTGGTGCTG--TGT----------GCCAGCAGCTGAT-CAAACCTTCCGGAA---TTGGAATATTCCA----TAATTTCCCCCACTCGTTTTTGTAATTTTTCTGTAATTTGAA--CAAGCAATGGACGAAACCAA-------AAATTTTTAACTTTAATT-GT--AATTAGAAGTGTTAAGAACG-T----------ATGAGA-TTTATCGGCAACTATTTGG------CTTGATTTTAAAAACATTT------TCAATG--GAGATTT-------------------TTTAAT
dp5 XR_group8:4019250-4019341 + TAACTGTATATAAATTAT--------TCAATTTT--ATTAGTCTTA--A---------AC-CG-AA-------CATCAAATGCGTTGAA---AC---AC----CAGCAACCG-----------------------------------------------------------------------AA-----------AGT-GTCCCA--TGT----------ATCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_29:251371-251462 + TAACTGTATATAAATTAT--------TCAATTTT--ATTAGTCTTA--A---------AC-CG-AA-------CATCAAATGCGTTGAA---AC---AC----CAGCAACCG-----------------------------------------------------------------------AA-----------AGT-GTCCCA--TGT----------ATCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004822:2993483-2993544 - TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCACG-AGCGGC-----GGAAATGATTTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:13871507-13871573 + TGAGCGCA--TAAATT------------------------GTTTTA--A---------TTGCA-----------------------GTAA--AC---AA----CTGCAGCAA-----------------------------------------------------------------------AA--------------GGCGTTG--CAA----------GTGACCAGCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:7416277-7416393 + TGTCTGTGTGTGTGCAGCATAAAAAGATAATTTT--GAGTTTTTGA--A---------TCGTT-AA-------AAGCAATTAATTGCCAC--TA---CG----CAGCAGCAG-----------------------------------------------------------------------ACC----------AGACATCCAG--TCA----------G----------------------------------------------------------------------------------------C--CAAGCAGCCAACCAGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:3211117-3211190 + TACATATATATA---TAT--------ACAATTG----CAAGTGCTA--A---------C------------------------------------------------ACTCG-----------------------------------------------------------------------AG-----------GCT-ATCCAT--TGCATGTGCAGTTGTCCGCAGCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAC-CAAACCTTGCGGAA---TCCG----TTCCA----TAATTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAAACATTAAGGACAAA----------ATGAGA-TTTATTGGCAA-TTTCTGA------CGA---------AA-ATTT------CCCACA----------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................TTAAGGACAAA----------ATGAGA-TTTATTGGC.................................................................................2615.00500000022100000000
...........................................................................TCAAATGATTTGTAA--GC---AA----CTGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2614.00400000031000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TAAGGACAAA----------ATGAGA-TTTATTGGC.................................................................................2513.00301000000110000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGAGA-TTTATTGGCAA-TTTCTGA------CGA---------AA-AT................................................3012.00200000020000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGGACAAA----------ATGAGA-TTTATTGGCA................................................................................2512.00201010000000000000
....................................................................................................................................................................................................................................................................................................................................................AAAT-TCTATCTGTAATC-GT--AATGATA..........................................................................................................................2611.00100000000100000000
......................................................................................................................................................................................................................................................GAA---TCCG----TTCCA----TAATTCC----AC--------------....................................................................................................................................................................................................2111.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................TAAACATTAAGGACAAA----------ATGAGA-TT........................................................................................2511.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................CTAAACCAA-------AAAT-TCTATCTGTAATC-GT--.................................................................................................................................2811.00101000000000000000
..........................................................................ATCAAATGATTTGTAA--GC---AA----CTGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
............................................................................................................................................................................................................................................................................................................................GCAATGGACTAAACCAA-------AAAT-TCTATC.............................................................................................................................................2711.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................TAAGGACAAA----------ATGAGA-TTTATTGG..................................................................................2411.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................A----------ATGAGA-TTTATTGGCAA-TTTCTGA------CGA---------.....................................................2811.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................AA-------AAAT-TCTATCTGTAATC-GT--AATGATA..........................................................................................................................2811.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................TGTAATC-GT--AATGATAAACATTAAGGA...............................................................................................................2711.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................TGATAAACATTAAGGACAAA----------ATGAGA-TT........................................................................................2811.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGGCAA-TTTCTGA------CGA---------AA-ATT...............................................2511.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................TCTATCTGTAATC-GT--AATGATA..........................................................................................................................2211.00100000000000100000
....................................................................................TTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGG...................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TAAGGACAAA----------ATGAGA-TTTATTGGCAA-T.............................................................................2811.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................TAAACATTAAGGACAAA----------ATGAGA-TTTAT.....................................................................................2811.00100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................T-TCTATCTGTAATC-GT--AATGATAAACA......................................................................................................................2711.00100000010000000000
...........................AAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................TCTGTAATC-GT--AATGATAAACATTAAGGACA.............................................................................................................3111.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................TGATAAACATTAAGGACAAA----------ATGAGA-T.........................................................................................2711.00100000000100000000
.........................................................................................................................................................................................................................................................................................................TTCTGTAATGCAAG--CAAGCAATGGA........................................................................................................................................................................2511.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGGACAAA----------ATGAGA-TTTATTGGC.................................................................................2411.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTAAGGACAAA----------ATGAGA-TTTATTGGCAA-T.............................................................................2911.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGA-TTTATTGGCAA-TTTCTGA------CGA---------AA-ATT...............................................2911.00100000000000001000
................................................................................TGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AG......................................................................................................................................................................................................................................................................................................2811.00100000000100000000
droSec2
TAATTGTACATAAGTTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAC-CAAACCTTGCGGAA---TCCG----TTCCA----TAATTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAAACATTAAGGACAAA----------ATGAGA-TTTATTGGCAA-TTTCTGA------CGA---------AA-ATTT------CCCACA----------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................AATGATTTGTAA--GC---AA----CTGC.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................CATCAAATGATTTGTAA--GC---...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................C--------------TTTCTGTAATGCAAG--CA.................................................................................................................................................................................1811.0011000
dm3
TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGACACAAACCTTGCGGAA---TCCG----CTCCA----TA-TTCC----AC--------------TTTTTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAAACATTAAGGACAAA----------ATGAGA-TTTATTGGCAA-TTTCTGG------CGA---------AA-ATTT------CCCACA----------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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................................................................................................................................................................................................................................................................................TTCC----AC--------------TTTTTGTAATGCAAG--...................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCAA-TTTCTGG------CGA---------AA-A.................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGG...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGGACAAA----------ATGAGA-TTTATTGGCAA-TT............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TCTATCTGTAATC-GT--AATGATAAACAT.....................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTGGCAA-TTTCTGG------CGA---------AA-ATT...............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................ATAAACATTAAGGACAAA----------ATGAGA-TTTA......................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCA........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ACTAAACCAA-------AAAT-TCTATCTG...........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TAAACCAA-------AAAT-TCTATCTGTAA........................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGA-TTTATTGGCAA-TTTCTGG------.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................GCG-AA-------CATCAAATGATTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................TCAAATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................GACACAAACCTTGCGGAA---TCCG----CTC.....................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................GTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGG...................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AG......................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATCAAATGATTTGTAA--GC---AA----CTGC.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................G--CAAGCAATGGACTAAACCAA-------........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGCAAG--CAAGCAATGGACTAAACC.................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATTTT--ATTAGTGTTA--A---------TCGCG-AA-------C..................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GT--AATGATAAACATTAAGGA...............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GT--AATGATAAACATTAAGGAC..............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TCCG----CTCCA----TA-TTCC----AC--------------TTTTTGTAA...........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--............................................................................................................................................................................................................................................................................................2111.0010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CCAA-------AAAT-TCTATCTGTAATC-GT--AA...............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................CTAAACCAA-------AAAT-TCTATCTGT..........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGC......................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................AACCTTGCGGAA---TCCG----CTCCA----TA-TT..........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AGCAGCCGACACAAACCTTGCG......................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAA-TTTCTGG------CGA---------AA-..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCAA-TTTCTGG------CGA---------AA-ATTT------CCCAC...................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AACCAA-------AAAT-TCTATCTGTAATC-GT--AATG.............................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGGACAAA----------ATGAGA-TTTATTGGCA................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................ATGATTTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------ATC.....................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GGTGCTG--TGT----------GCCAGCAGCCG....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................TAGTGTTA--A---------TCGCG-AA-------CATCAAATGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CAATGGACTAAACCAA-------AAAT-TCTATCTG...........................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCAA-TTTCTGG------CGA---------AA-ATTT------C.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................A----------AGTGGTGCTG--TGT----------GCCAGC.........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAA-TTTCTGG------CGA---------AA-AT................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AAT-TCTATCTGTAATC-GT--AATGATAAA........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTGTAA--GC---AA----CTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGT..................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ACTAAACCAA-------AAAT-TCTATCTGTAA........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CA.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................A---TCCG----CTCCA----TA-TTCC----AC--------------TTTTTGTAA...........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AAT-TCTATCTGTAATC-GT--AATG.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AA----------ATGAGA-TTTATTGGCAA-T.............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CAAGCAATGGACTAAACC.................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................ATAAACATTAAGGACAAA----------ATGAGA-..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................GTAATGCAAG--CAAGCAATGG.........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TAAGGACAAA----------ATGAGA-TTTATTGGCAA-T.............................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------...............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TGATAAACATTAAGGACAAA----------ATGAGA-..........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AA-------CATCAAATGATTTGTAA--GC---AA----CT...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TGTAATGCAAG--CAAGCAATG..........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATAAAATGATTTGTAA--GC---AA----TTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACGAAACCAA-------AAAT-TCTACCTGTAATC-GT--AATGATAAACATTAAGGACGAA----------ATGAGA-TTTATTGGCAA-TTTCTGG------CAT---------AA-ATTC------CCCACA----------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................CAAGCAATGGACGAAACC.................................................................................................................................................................1811.0011000000
...........................CAATTTT--ATTAGTGTTA--A---------TCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
......................................................................................................................................................................................................................................................................................................................................................AT-TCTACCTGTAATC-GT--AATGAT...........................................................................................................................2311.0010000010
.....................................................................................................................................................................................................................................................................................................................AG--CAAGCAATGGACGAAACC.................................................................................................................................................................2011.0010000010
....................................................................................................................................................................................................................................GCCGAT-CAAACCTTGCGGAA---TCCG----........................................................................................................................................................................................................................................2411.0011000000
.........................................................................................................................................................................................................................................................................................................................................................TCTACCTGTAATC-GT--AATGATAAACA......................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................TTCC----AC--------------TTTCTGTAATGCAAG--CAAG...............................................................................................................................................................................2511.0011000000
.......................................................................................................................................................................................................................................................................CA----TA-TTCC----AC--------------TTTCTGTAATGCAA......................................................................................................................................................................................2411.0011000000
............................................................................................................................................................................................................TG--TGT----------GCCAGCAGCCGAT-CAAACCTTG........................................................................................................................................................................................................................................................2711.0011000000
...............................................................................ATGATTTGTAA--GC---AA----TTGCAGCT.............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTGGCAA-TTTCTGG------CA...............................................................2011.0011000000
.................................................................................................................................................................................................................GT----------GCCAGCAGCCGAG-.................................................................................................................................................................................................................................................................15200.0510000001
droYak3
TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATAAAATGATTTGTAA--GC---AA----TTGCAGCTA-----------------------------------------------------------------------AAA----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTCTGTAATGCAAG--CAAGCAATGGACTAAACCAA-------AAAT-TCTATTTGTAATC-GT--AATGCTAAACATTAAGGACGAA----------ATGAGA-TTTATTGGCAA-TTTCTGG------CAAAA-----A-AAAATTC------CCCACA----------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................TCTATTTGTAATC-GT--AATGCT...........................................................................................................................2111.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................AACATTAAGGACGAA----------ATGAGA-TTTATTG...................................................................................2811.00100000010000
...................................................................................................................................................................................................................................AGCCGAT-CAAACCTTGCGGAA---TCCG----T.......................................................................................................................................................................................................................................2611.00101000000000
..............................................................................AATGATTTGTAA--GC---AA----TT...................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.........................................................................CATAAAATGATTTGTAA--GC---AA----T....................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGACGAA----------ATGAGA-T.........................................................................................2011.00101000000000
................................TT--ATTAGTGTTA--A---------TCGCG-............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
..................................................................................................................................................................................................................................................................................................................................................................................AACATTAAGGACGAA----------ATGAGA-T.........................................................................................2211.00110000000000
................................................................................................................................................................................................................................AGCAGCCGAT-CAAACCTTGCGGA....................................................................................................................................................................................................................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................GA-TTTATTGGCAA-TTTCTGG------C................................................................2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................TTGTAATC-GT--AATGCTAAACATT....................................................................................................................2311.00100000010000
.........................................................................CATAAAATGATTTGTAA--GC---...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGACGAA----------ATGAGA-TTTATTGGC.................................................................................2811.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................GCTAAACATTAAGGACGAA----------ATGAGA-TT........................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................GGACTAAACCAA-------AAAT-TCTATTT............................................................................................................................................2311.00100100000000
................................................................................................................................................................................................................................................................................................................................................................GTAATC-GT--AATGCTAAACAT.....................................................................................................................2011.00101000000000
..............................................................................................................................................................................................................................CCAGCAGCCGAT-CAAACCTTGCGGAA---TC..............................................................................................................................................................................................................................................2811.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGAA----------ATGAGA-TTTATTGG..................................................................................1811.00100100000000
..................................................................................................................................................................................................................................................................................................................GCAAG--CAAGCAATGGACTA.....................................................................................................................................................................1911.00100100000000
droEug1
TAAATGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC-A-AA----CTGCAGCTA-----------------------------------------------------------------------AA-----------AGTGGTGCTG--TGT----------GCTAGCAGCCAAT-CAAACCTTTCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCTGA--CATGCAATCGACGAAACCAA-------AAAT-TCAATCTGTAATC-AT--AATGATAAACTTTAAGGACAAA----------ATGAGA-TTTATTGGTAAATTTCTGG------AA--------A-CA-ATTTC-----CCCACA----------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AA----CTGCAGCTA-----------------------------------------------------------------------AAAACAAAAAAAGAGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCAAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATC-AT--A-CGATAAACTTTAAGGACAAA----------ATGAGA-TTTATTGGCAATTTTCTGG------AA--------ACAA-ATTTC----CCCCACA----------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AA----ATGCAGCTA-----------------------------------------------------------------------AAAAGA-------AAAGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCTTGCGGAA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCAAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATCTGT--AATGATAAACTTTAAGGACAAA----------ATGAGA-TTTATTGGCAAATTTCCGGTATATACAA---------AA-ATTC-AAAAGCCCACA----------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AACCAACTGCAGCTA-----------------------------------------------------------------------AAAAAAGAAAAAAAGTGGTGCTGTGTGT----------GCCAGCAGCCGAA-CAAACTCTGCGGAATCATCCG----TTCCA----TA-TTCC----ACT-------------TTTTTGTAATGCGAACACAAGCAATGGACGAAACCAA-------AAAT-TTTATCTGTAATC-GTATAATGATAAATGTTAAGGACAAA----------ATGAGA-TTTATTGGCACATTTCTGG------AA--------ACAA-ATTT------CCC-GA----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TAACTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATGAAATGATTTGTA-AAGC---AA----CTGCAGCTA-----------------------------------------------------------------------AA-----------AGTGGTGCTG--TGT----------GCCAGCAGCCGAA-CAAACCTTGCGGTA---TCCG----TTCCA----TA-TTCC----AC--------------TTTTTGTAATGCGAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATGATAATTGTTAAGGACAAA----------ATGAGA-TTTATTGGCAAATTTCTGG------AAA---------AA-ATTT------CCCACA----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TAATTGTACATAAATTAT--------ACAATTTT--ATTAGTGTTA--A---------TCGCG-AA-------CATCAAATGATTTGTA-AAGC---AA----CTGCAGCTA-----------------------------------------------------------------------A------------AGTGGTGCTG--TGT----------GCCAGCAGCCGAT-CAAACCGCGAGGAA---TCCG----CTCC-----TA-TTCC----AC--------------TTTCTGTAATGCGAA--CAAGCAATGGACGAAACCAA-------AAAT-TCTATCTGTAATC-GT--AATACTAAATATTAAGGACACC----------ATGAGA-TTTATTGGCGA-TTTCTGA------AC----------AC-ATTTC-----CCCACATCCACATCC-------------------CG---GSizeHit CountTotal NormTotal
No Reads
droKik1
TAAATGTACATAAATTAT--------ACAATTTTATATTAGTGTTA--A---------TC-CGAAGCATGCAACAT--AATGATTTGTA-AAGC-G-AA----CTGCAGCCA-----------------------------------------------------------------------AAA----------CGTGGTGCCG--G----------------------AAT-CAAACCTTGCGGAAT-ATCTG----TTCCA----TA-A--------------------------------TCCAAT--CAAGCAATGGACGAAACCAA-------AAAT-TCAAACTGTAATT-TT--AATT----------------AAATAAGAACCCGTGTAATTTCATTGGCAA-CT----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TATTTGTATATAAATAAT--------AGAATTTT--ATTAGGCTTA--AAATCTAAAATC-CG-AA-------CATTTAATGATT-GTA-CA-CAAAAA----CTACTGGTATCAAAAAAAAAAAAAACAAAAAACGTATAAAA-------------TA---GAAAAGAAAAAAAATGGATAAAAA----------TGTGGTGCTG--TGT----------GCCAGCAGCTGAT-CAAACCTTCCGGAA---TTAGAGTATTCCACGAGTA-TGCC----ACTC------------TTTTTGTAATTTGAA--CAAGCAATGGACGAAACCAAAAACCAAAAAT-TGTAATTTTAATT-GT--AATTGTAAATGTTAAGAACG-A----------ATGAGA-TTTATCGGCAACCGTTTGG------CTTGGTTTTAGCAA-TTTT------TCAACG---AGATTTTAAATGATTTAAATGAACGAA---GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................GA-TTTATCGGCAACCGTTTGG------CTT..............................................................2411.001000010
........................................................................................................................................................................................AA----------TGTGGTGCTG--TGT----------GCCAGC.........................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTATCGGCAACCGTTTGG------CTTGGT...........................................................2411.001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................TTATCGGCAACCGTTTGG------CTT..............................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................CGAAACCAAAAACCAAAAAT-...................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................................ATTCCACGAGTA-TGCC----ACTC------------TT..................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................................................................................................................................................ATTTGAA--CAAGCAATGGACGAAACC.................................................................................................................................................................2511.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................GAACG-A----------ATGAGA-TTTATCGGC.................................................................................2111.001010000
...............................................................................................................................................................................................................................................................................................................AATTTGAA--CAAGCAATGGACGAAACCA................................................................................................................................................................2711.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................ATGAGA-TTTATCGGCAACCGTTTGG------CTT..............................................................2811.001010000
.........................................................................................................................................................................................................................................................................................................................................................TGTAATTTTAATT-GT--AATTGTA..........................................................................................................................2211.001010000
.....................................................................................................................................................................................AAAAA----------TGTGGTGCTG--TGT----------GCC............................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................................AAAAAAAAAAAAAACAAAAA......................................................................................................................................................................................................................................................................................................................................................................20200.051010000
........................................................................................................................AAAAAAAACAAAAAACGTAA................................................................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
TATTTGTATATAAATTAT--------AGAATTTT--ATTAGGGTTATAA---------TCCGA-AA-------CATTTAATGATTTGTA-CA-CAA-AA----CTAATGGTA-----------AAAAACA---AACGTA-AAAATATGGATAAAAAATAGAAGAAAACAAAAAAAAAAGATAAAAA----------TGTGGTGCTG--TGT----------GCCAGCAGCTGAT-CAAACCTTCCGGAA---TTGGAATATTCCA----TAATTTCCCCCACTCGTTTTTGTAATTTTTCTGTAATTTGAA--CAAGCAATGGACGAAACCAA-------AAATTTTTAACTTTAATT-GT--AATTAGAAGTGTTAAGAACG-T----------ATGAGA-TTTATCGGCAACTATTTGG------CTTGATTTTAAAAACATTT------TCAATG--GAGATTT-------------------TTTAATSizeHit CountTotal NormTotal
No Reads
dp5
TAACTGTATATAAATTAT--------TCAATTTT--ATTAGTCTTA--A---------AC-CG-AA-------CATCAAATGCGTTGAA---AC---AC----CAGCAACCG-----------------------------------------------------------------------AA-----------AGT-GTCCCA--TGT----------ATCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................ATCAAATGCGTTGAA---AC---AC----CAGC.................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
droPer2
TAACTGTATATAAATTAT--------TCAATTTT--ATTAGTCTTA--A---------AC-CG-AA-------CATCAAATGCGTTGAA---AC---AC----CAGCAACCG-----------------------------------------------------------------------AA-----------AGT-GTCCCA--TGT----------ATCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................CTTA--A---------AC-CG-AA-------CATCAAATGCGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droWil2
TAATTGTACATAAATTAT--------AAAATTTT--ATTAGTGTTA--A---------TCACG-AGCGGC-----GGAAATGATTTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................GTTA--A---------TCACG-AGCGGC-----GGAAATGATTT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
droVir3
TGAGCGCA--TAAATT------------------------GTTTTA--A---------TTGCA-----------------------GTAA--AC---AA----CTGCAGCAA-----------------------------------------------------------------------AA--------------GGCGTTG--CAA----------GTGACCAGCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TGTCTGTGTGTGTGCAGCATAAAAAGATAATTTT--GAGTTTTTGA--A---------TCGTT-AA-------AAGCAATTAATTGCCAC--TA---CG----CAGCAGCAG-----------------------------------------------------------------------ACC----------AGACATCCAG--TCA----------G----------------------------------------------------------------------------------------C--CAAGCAGCCAACCAGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TACATATATATA---TAT--------ACAATTG----CAAGTGCTA--A---------C------------------------------------------------ACTCG-----------------------------------------------------------------------AG-----------GCT-ATCCAT--TGCATGTGCAGTTGTCCGCAGCTGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:45 PM