ID:

dsi_17265

 Coordinate:

3l:3791101-3791399 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.0 -14.9 -14.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACAAGGGTCTAAAATTCCAAAACTCCAATCCTAGCAAGCCTTGGACTTTTGTAAGTTTTGATCAAAGGTGGCAATGCATTCAATGTCATGGTAAGAAGTAAGTTGTCTATGTAGAAATCCTCATTCAGCCGGTCAAGTCAGTACGAGAAAGGTCTCAATTTGAAATTGTCTTAAAAATATTTTATTGTTTTGTACTGTGGTGAGTTAAAACGGAACTTACGAAAAAAGTGATACATCAAAAACATAAAAATTTGTAATACAAAGTATTCGTATCAAAAACAATTCGGAACAATTTTTTTCTCTGTATTAAAGTGTTACGAACACTGCGGTATTTTTTAGTGCTTTTCAAGGGAGACCGAAGGTATATAAGCAGCGTTCCCGAACGGTCGCATTTAAATT
*************************************************************************************************************************************************************************************************************...........((((.......))))..........(((........)))(((((..(((.((((((.((.....(((.((((..((....))..)))).)))....)).)))))).)))...)))))...*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................................................................................................................................................................................................AGACCGAAGGTATATAAGCAG.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TAGTGCTTTTCAAGGGAGACC.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAAAACGGAACTTACGAAAAA............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TACTGTGGTGAGTTAAAACGG.......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................TGGCATGTTAAGAAGTAAGGTG...................................................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TACGAACACTGCGGTATTTTT............................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................CAAGTCAGTACGAGAAAGGTC..................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TATGTAGAAATCCTCATTCAG............................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................ATATAAGCAGCGTTCCCGAAC............... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................AGTATTCGTATCAAAAACAAT.................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................ATGTAGAAATCCTCATTCAGCCG............................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................TATTGTTTTGTTCTGAGGGGA.................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0
..........................................................TGATCAAAGGTGGTAATTCGTT............................................................................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0
......................................................GTTTTGATCAAGGGTGGTA...................................................................................................................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0
.............................................................................................AGAAGTAAGTAGTCT................................................................................................................................................................................................................................................................................................... 15 1 9 0.22 2 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................................AATATTTGATTGTTTTGTA............................................................................................................................................................................................................. 19 1 5 0.20 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................ATATAAGCAGCTTTCCTGAC................ 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................GGATGACGGAAGGTATATA............................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0 0
......................................CCTTGGACTTTGGTAACT....................................................................................................................................................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 1 0 0
.....................ACTCCCATCCTGGCAATCC....................................................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................................................................................................................CCACTCGGAACCATTTTTTT.................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGATACATCAGAGACA........................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1
.........................................................................................................TCTATGAAGAAATCTTCTTT.................................................................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TCATGGGAGACCGAT....................................... 15 2 20 0.05 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................AAACGGTACTGAGGAAAAAA............................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................TCAGTCTTTTTCTCTGTATT........................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TGTTCCCAGATTTTAAGGTTTTGAGGTTAGGATCGTTCGGAACCTGAAAACATTCAAAACTAGTTTCCACCGTTACGTAAGTTACAGTACCATTCTTCATTCAACAGATACATCTTTAGGAGTAAGTCGGCCAGTTCAGTCATGCTCTTTCCAGAGTTAAACTTTAACAGAATTTTTATAAAATAACAAAACATGACACCACTCAATTTTGCCTTGAATGCTTTTTTCACTATGTAGTTTTTGTATTTTTAAACATTATGTTTCATAAGCATAGTTTTTGTTAAGCCTTGTTAAAAAAAGAGACATAATTTCACAATGCTTGTGACGCCATAAAAAATCACGAAAAGTTCCCTCTGGCTTCCATATATTCGTCGCAAGGGCTTGCCAGCGTAAATTTAA
***************************************************************...........((((.......))))..........(((........)))(((((..(((.((((((.((.....(((.((((..((....))..)))).)))....)).)))))).)))...)))))...************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...............................................................................................................................CGGCCAGTTCAGTCATGCTCT........................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................AGTCGGCCAGTTCAGTCATG............................................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................TAGGAGTAAGTCGGCCAGTTC...................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................CGGCCAGTTCAGTCATGCTC............................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................................................................AATTTTGCCTTGAAGG................................................................................................................................................................................... 16 1 3 1.00 3 0 3 0 0 0 0
............................................................................................................................TTTCGGCCAGTTCAGTCATGCT............................................................................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................TCGGCCAGTTCAGTCATGCTC............................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TGTAAGTCGGCCAGTTCAGT................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................ATCGGCCAGTTCAGTCATGCTC............................................................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................AAGTCGGCCAGTTCAGTCATG............................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................TTTAGGAGTAAGTCGGCCAGT........................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................GCACCTCTCAATGTTGCCTT........................................................................................................................................................................................ 20 3 2 0.50 1 0 0 1 0 0 0
.............................................................................................................................................................................................................ATTTTGCCTTGAAGG................................................................................................................................................................................... 15 1 7 0.43 3 0 3 0 0 0 0
...........................................................................................................................................................................................................AAATTTTGCCTTGAA..................................................................................................................................................................................... 15 1 20 0.30 6 0 6 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................CCATCAAAAGTCAAGAAAAGT................................................... 21 3 7 0.29 2 0 2 0 0 0 0
..................................GTTCGAAACCTGAAAA............................................................................................................................................................................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 0 1 0 0
............................................................................................................................................................................................................AATTTTGCCTTGAAG.................................................................................................................................................................................... 15 1 19 0.21 4 0 4 0 0 0 0
.............................................................................................................................................................................................................................................................................CATAGTTTCCGTTAAGGCT............................................................................................................... 19 3 20 0.15 3 0 0 3 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................CAAGGGTTCGCCAGTGTAAA..... 20 3 8 0.13 1 0 0 0 1 0 0
......................................................................................................................GGAGTAAGTCGTCCA.......................................................................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................................................CCTCTGGCTACGATAT................................. 16 2 18 0.06 1 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................................................................................................................................CGTCACAAGGGTTTGGCAG........... 19 3 20 0.05 1 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................................................................................AAGTTCGCTCTTGCTTC...................................... 17 2 20 0.05 1 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................................................................................................................CAAGTTACCTCCGGCTTC...................................... 18 3 20 0.05 1 0 0 0 0 1 0
........................................................................................................................................................................................................................AATGCTTTTGTCACT........................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:3791051-3791449 - dsi_17265 ACAAGGGTCTAA-----AATTCCAAA---ACTCCAATCC-TAGCAAG-CCTTG------------------------------G---A------------C-------TTTTGTAAGTTTTGATCAAAG---GTGGCAATGCATTCAATGTCATGGTAAGAAGTAAGTT------GTCTATGTAGAAATCCTCATTCAGCCGGTC-AAGTCAGTACGA----------GAAAGGTCTCAATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGT-----ACTGTGGTGAGTTAAAACGG--AAC-TT----AC--GAAAAAAGTGATACATCAA------AAACATAAAAAT---TTGTAATACA-----A------------------------------------------------------------------------------------------------AGT-ATTC----GTA-TC---------------AAAAACAATT------CGGAACAATTT-TTTTCTCTGTATTAAAGTGTTA--CGAA------------------CA--C--TGCGGTATTTTTTAGTGCTTTTCA-AGGGAGA-CCGAAGGTATAT----AAGCAG----------------------------CGTTCCCGAACGGTCGCATTT-AA-ATT
droSec2 scaffold_2:3896377-3896775 - ACAAGGGTCTAA-----AATTCCAAA---ACTCCAATCC-TAGCAAG-CCTTA------------------------------G---A------------C-------T--TGTAAGTTTTGATCAAAG---GTGGCAATGCATTCAATGTCATGGTAAGAAGTAGGTT------GTTTATGTAGAAATCCTCATTCAGCCGGTC-AAGTCAGTACGA----------GAAAGGTTTCAATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGT-----ACTGTGGTGAGTTAAAACGG--AAA-AT----AC--GAAAAAAGTGATACATCAA------AAACT--AAAAT---TTGTAATACA-----A------------------------------------------------------------------------------------------------AGT-ATTCGTACGTA-TC---------------AAAAACATTT------CGGAACAATTT-TTTTCTCTGTATTAAAGTGTTA--CGAA------------------CA--C--TGCGGTATTTTTTAGTGCTTTTCA-AGGGAGA-CCGAAGGCTTAT----AAGCAG----------------------------CGTTCCCCAACGGTCGCATTT-AA-AAT
dm3 chr3L:3902648-3903053 - ACAAGGGTCTTA-----AATTCCAAA---ACACCAATCC-TAACAAG-CCTTG------------------------------G---A------------C-------TTTTGTAAGTTTAGATCAAAG---GTGGCATTGCATTCAATGTCATGGTAAGAAGTAGGTC------GTCTAGGTAGAAATCCTCATTCAGCCGGTC-AAGTCAGTACGA----------GAAAGGTCTCAATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGT-----ACTGTGGTGAGTTTAAACGA--AAA-AC----ACAAAAAAAAAGTGATACATAGA------AATCATAAAAAA---TTTTAATACA-----A------------------------------------------------------------------------------------------------GGT-ATTCGTACGTA-TC---------------AAAAACATTT------CGGCACAATTTTTTTTCTCTGTACTAAAGTGTTA--CGAA------------------CA--C--TACGGTATTTTTTAGTGATTTTCA-ACGGACA-CCGAAGGTATAT----AAACAG----------------------------CGTTCGCGAACGGTCGCCTTC-AA-AAC
droEre2 scaffold_4784:6602120-6602520 - ACAAGGGTCTTA-----AATTCTAAA---ACACCAATCCCTAGCAAG-CCTTG------------------------------G---A--------------------TTATGTGAGTATAGATCAAGG---GTGGCATTGTAATCAAAGTCAATGTAA-AAGTAGGTT------GTCTTGCTAGAGAATTTCATTCAGCCGGTC-AAGTCAGTACGA----------TAAAGGTCTCGATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGTATTGTATTGTGGTGAGTTAAAAGCATAAAA-AC----AAGAAAAAAAAGTGCTAAA---A------AAGCT----------------------------------------------------------------------------------------------------------TAAACCTAAAATAAAAAAAAAA---------TCC---------------AAAAACATTT------CGGTATAAATG-TTTGCTATGTATTAAAGCGTTA--GAAA------------------TT--CTTTGTGGTATTTTTTAGTGCTTTTTA-ACCTAGA-CCAAAGGTATAT----AAGCTG----------------------------CCTTCGCGCACGGTCCCATTT-AA-AAT
droYak3 3L:4462717-4463086 - ACAAGGGTCTTA-----AATTTCAAACCAACAACAATCT-TAGCAAG-CCTTG------------------------------G---A--------------------TTATGTGAGTAT-GATCAAAG---GTGGCATTGTAATCAATGTCAAGGTAAAAAGTAGGTA------GTCTGGTTAAAGCATTTTATTCAGCCGGTC-AAGTCAGTACGA--------TATAGAGGTCTCGATTTGA-AATTGTCCT--AAAAATATTTTATTGTTTTGT-----ATTGTGGTGAGTTCAACG-G--AA-------------AAATAAGTGCTATATAAA----------------------------------------------------------------------------------------------------------------------------------------------TACATATTC---------------AAAAACATTT------CGGCACAATTT-TTTGCTGTGTATTAAAGTGTTA--CGAA------------------TC---TTTGCGGTATTTTTTAGTACCTTTCA-ACCGAGA-GCAAAGGTATAT----AAGCTG----------------------------CGTTCGCGAACGGTCTCATTT-AA-AAT
droEug1 scf7180000409466:1657550-1657966 - C-AAAGGTAAAG-------------------------------CAAA-TTTAA------------------------------A---A------------G------TTTTGGTAAAAGTAAAACAAAG---AATGCCTTGAATTTAAATTCAGAGTAA-AAGTAGGTT------GTCTTAGCAAAGAATTTTATTCAGCCAGTT-AAGTCTGTACGT--------TATCAAGGTCTTGTTTAGA-AACTGTTT---CAAAATATTTTATTATTTTAT-----ATTGTGGTGAGTTTTCAAGACGAAC-GTGTAGAC--GAAA-AATTAGGTCAACAA------AATTT--T---TCTTTTT---TAAATATACA---------------------------------------------------------------ACAGTTATT---------AAATGTAAAAAACAAAGATCA---------TTCAAGATTTTGAAAACGTGTAA------CTTCTT----CGATTG-TTTTCAGTGTTTCGGTATGTTTT-A-AAATG---CG----------AA------TAAAGATTTTTTAGTGCATTTTT--GATTGA-CCGAAAGTGTGTAG--GAACCC----------------------------CGTTCGTAGACATTCGT-TTA-AA-AAT
droBia1 scf7180000302428:572638-573028 - GCAGAGGTCTAA-----AATTGTTAA---ACACCTATATTAAACAAG-CATTG------------------------------G---T------------CGTTCACTTTTGGTAAGTT-----TCAAG---GAGGCATTGAATTCGATGTCACAGCAC-AAGTAGGTC------AGATCGACTAAGAATTTCATTCAGCCGGTC-AAGTCAGTGCGA--------TATCAAGGTCTCGTTTTGA-AATTGTCTT--GAAAATATTTTACTATTTTGT-----ATTGTGGTGAGTTAAGAACAA-AAA-AG----AA--GGAAAAAGTGGTTT-TCGAGGGTT--------ACAA--------------------------------------------------------------------------------TTGCGAGTGCTTAAAAAGTTTC----------------------------------------------------------CACCTC----CGATCG-ATTTCAGTGTATTGGTGTGATTTTG-AA-------------------ATTG--TTTGGCATTTTTTAGTACGTTTTA--CGCAGA-CCGAGGGTATAT----AAGCCA----------------------------CGTGCGCGAACGGTCCCATTT-AA-AAT
droTak1 scf7180000415440:118198-118564 - TA-------CAA-----AATTATAGA---ACACAAAT-------------TTG------------------------------G---A------------CTTTTGATTTTGGTAAGTG-----CAAAG---GTGGCGTTGCATTCGGTGTCACAGTAA-AAGTAGGTT------TTCTCGGCAAAGAATTTCATTCAGCCGGTC-AAGTCAGTGCGG--------TATCAAGGTCTCGTTTTGA-TATAGTCTT--GAAAATATTTTATTATTTTGT-----ATCGTGGTGAGTTGAGAAAA-------A----AG--GAAAAAAGTGAGTTGGCTA------AAATT--AAAATATATTT---TGGA-----A---------------------------------------------------------------ACAGTTGTTAAAAAG----------------------------------------------------------TTTTGCCACC----CAATAG-TTTTCAGTGTATTGATGTAATTT------------------------------ATCGGTATTTTTTAGTACTTTTTA----TATA-CCGAGGGTATAT----AAGCCC----------------------------AGTCCGCGAACGGTCCTATTT-AA-AAC
droEle1 scf7180000491249:1190977-1191250 + GCAAAGGTACAG-----GCGAATACT---ACAACTGTTTTGAACAAAACTTTG------------------------------G---A------------A-------TTCGGTAAGTGTAGATCTAAT---CTTCCTGTGAAATTACTGTCAATGTCA-A--------------------------AATTTTCTTCAAGTGATCAAAGTCAGTACGG--------TATCGAGGTCTT-TTTTAA-AATTGTTCCTTAAAAATATTT--TTACTCTGC-----ATTGTGGTGAGTAAGCAGTGAAAAAACC----TTGAAAATTCAGCG--------T------ATAGG--AAAAT---ACGTATCACT-----ATATACTTAT-------------------------------------------------------------------------------------------ATTTACGCGAG-TC---------------AAAAATCATT------TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000763121:8341-8797 - GCAAAGGTGGAA-----AGTTATTTC---TCTTTTGTTTGGAATAAGACCTTG------------------------------G---A------------A-------TTTCGTAAGTCTAGATCAAGT---GTGGCCCTGAATTTAGTGTCAAAGTAA-AGGTAGCTT------GTCTTGGCTGGGAATTTCATTCAGCCGGTC-AAGTCAGTACGATAATACGATATTGAGGTCTTGTTTTGA-AATTGTCTTT-TAAAATATTTTATTACTTTGA-----ATTTTGGTGAGTTAATAAAA--AAA-AC--------------------------------------------------CATTTACT-----CTTTATTCATAACAACGCAAACCAATAATAACTCAATAATTTTAATGCATATATTAAAATGTTGAAATTGTTTAAAAAATTAT----------------------------------------------------------CTTCCA----TGATTA-GTTTGAGTGTACTGGTGTATTTTAC-AAATATAGCATATGTTTTAAAA--A--TGTAGCAATTTTTAGGACTTTTTT--TGTTGACTCGAGGGTATAT----AAGCCT----------------------------GTTACGCGAACGGTCTCATTCAAA-AAC
droFic1 scf7180000453052:269583-269941 - TAGAAG-TAAAA-ATAT----ATA-----------------TATAAG-TT----------------------------------------------------------TTCGGTAATTGTGAATCAA-A---GTAGCTGGGAATTTTATGTAAACATTA-AGGTAGGTT------GTCTTGGCAAATGATTTTATTCAGCCGGCG-AAGTCAGTACGA--------TATCGAGGTCTCGTTTTAA-AATTGTCTT--TAAAATATATAACCATTTCCT-----ATTGTGGTGAGTTCACAAAA--AAA-GTTTAAAA-AATATTTGAAG--------G------AAAGG---AAAT---TTGGAT----------------------------------------------------------------------------------------------------------------------------------TTAAAATTATAAAACTCTT------CCG-ATAATTC-ATTTCAGTGTATTTTGGGG-------AA------------------AG------TTGCCATTTTTTAGTGGGTTTTTTTTGGTGC-ACAAGGGTATAA----AAGAGC----------------------------CGTCCGCGAACGGTCCCATTTCAA-AAT
droKik1 scf7180000302351:747755-747940 + ATAG---TTTTC-----GGCACTCAA---AATCGAATTT-AAGCTGA-TTTCGTTTAACTT----------------------------------------------TATCGGTAAGCAAATATCAAAC---ATGGCCAAGCATTTAGTTTCAAAGTCAAATGTTGATTTCTAGAATCTAGACAAAGCATTCGAATCAGTCGGTC-AAACCAGAACGT----------A-----TATCGAATTGA---TCTTTTT--GAATATATTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:9535023-9535391 + GCAAAGATTAAAAAAAT----ATA----------------------------GTTAAACATCATCG--TAAATCAAAGATACAGTTGATATTATTGTCAACGGTCAATTTTGGTGAGTA-----GAAAA-TCTGTGTAAAGAATTCAGTGTCA-------AAGCATGTT------TCATTGAGAAAGCATTCGATTCAGTCAGTC-AAGTCATTGCAT--------T-GAGAGATATCGTTTTAA-AATTGTTTTAAAAAAATATTTCAACATTTTAT-----TTTGTGGTGAGTTTCTGAACT-------------------------TTTT-TATAGTGTTA--------AAA--------------------------------------------------------------------------------CTTAGTGTG---------------------------------------------------------------------------------------------ACCTTATTGGATAAGTTTTG-AAATA-------------------G--AGTGACC----------------------ATA-GT----GAGAATACACCAAAAATATCCGAAGATACGATATTTCGTTTTTGGTGATACTCCCAGTAGCAATT-AC-ATT
droBip1 scf7180000396569:1798286-1798649 - GCAAAGATTAAAAAAAT----ATT----------------------------AAAAAATATCATCTCATATAACAAAGATTCAGTTGATTTTGTTGTCAACAATAAATATTGGTAAGTA-----GGAAATTCATTGTGAATAATTCAGTGTCA-------AAGTATGTT------TCACTGAGAAAGCATTCGATTCAGTCGGTC-AAGTAATTTCA---------TAGAGAGATCTCGTTTTAAAAATTGTTTT--AAAAATATTTCATCGTTTTGT-----TTTGTGGTGAGTTTCCAAAAAATTT---------------------------ATATTGTTA--------ATT--------------------------------------------------------------------------------CCTAGAGTG---------------------------------------------------------------------------------------------ACCTTAATGGTT-----GTA-TAACT------------------------------------------------GAGTGA-CCAGGGGTGGCTAAA-AAAAAATACCACAAGGTACGATATTTCGATTTTGGTGATACTCATAGTAGCCATT-ACAATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAAGGGTCTAA-----AATTCCAAA---ACTCCAATCC-TAGCAAG-CCTTG------------------------------G---A------------C-------TTTTGTAAGTTTTGATCAAAG---GTGGCAATGCATTCAATGTCATGGTAAGAAGTAAGTT------GTCTATGTAGAAATCCTCATTCAGCCGGTC-AAGTCAGTACGA----------GAAAGGTCTCAATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGT-----ACTGTGGTGAGTTAAAACGG--AAC-TT----AC--GAAAAAAGTGATACATCAA------AAACATAAAAAT---TTGTAATACA-----A------------------------------------------------------------------------------------------------AGT-ATTC----GTA-TC---------------AAAAACAATT------CGGAACAATTT-TTTTCTCTGTATTAAAGTGTTA--CGAA------------------CA--C--TGCGGTATTTTTTAGTGCTTTTCA-AGGGAGA-CCGAAGGTATAT----AAGCAG----------------------------CGTTCCCGAACGGTCGCATTT-AA-ATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA-CCGAAGGTATAT----AAGCAG----------------------------............................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGCTTTTCA-AGGGAGA-CC............................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................TAAAACGG--AAC-TT----AC--GAAAAA...................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................T-----ACTGTGGTGAGTTAAAACGG--.......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--CGAA------------------CA--C--TGCGGTATTTTT...................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................C-AAGTCAGTACGA----------GAAAGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................................................................TATGTAGAAATCCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----AAGCAG----------------------------CGTTCCCGAAC.................2111.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGT-ATTC----GTA-TC---------------AAAAACAAT.......................................................................................................................................................................................2111.00100001000000000000
...................................................................................................................................................................................ATGTAGAAATCCTCATTCAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000000000
droSec2
ACAAGGGTCTAA-----AATTCCAAA---ACTCCAATCC-TAGCAAG-CCTTA------------------------------G---A------------C-------T--TGTAAGTTTTGATCAAAG---GTGGCAATGCATTCAATGTCATGGTAAGAAGTAGGTT------GTTTATGTAGAAATCCTCATTCAGCCGGTC-AAGTCAGTACGA----------GAAAGGTTTCAATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGT-----ACTGTGGTGAGTTAAAACGG--AAA-AT----AC--GAAAAAAGTGATACATCAA------AAACT--AAAAT---TTGTAATACA-----A------------------------------------------------------------------------------------------------AGT-ATTCGTACGTA-TC---------------AAAAACATTT------CGGAACAATTT-TTTTCTCTGTATTAAAGTGTTA--CGAA------------------CA--C--TGCGGTATTTTTTAGTGCTTTTCA-AGGGAGA-CCGAAGGCTTAT----AAGCAG----------------------------CGTTCCCCAACGGTCGCATTT-AA-AATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ACAAGGGTCTTA-----AATTCCAAA---ACACCAATCC-TAACAAG-CCTTG------------------------------G---A------------C-------TTTTGTAAGTTTAGATCAAAG---GTGGCATTGCATTCAATGTCATGGTAAGAAGTAGGTC------GTCTAGGTAGAAATCCTCATTCAGCCGGTC-AAGTCAGTACGA----------GAAAGGTCTCAATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGT-----ACTGTGGTGAGTTTAAACGA--AAA-AC----ACAAAAAAAAAGTGATACATAGA------AATCATAAAAAA---TTTTAATACA-----A------------------------------------------------------------------------------------------------GGT-ATTCGTACGTA-TC---------------AAAAACATTT------CGGCACAATTTTTTTTCTCTGTACTAAAGTGTTA--CGAA------------------CA--C--TACGGTATTTTTTAGTGATTTTCA-ACGGACA-CCGAAGGTATAT----AAACAG----------------------------CGTTCGCGAACGGTCGCCTTC-AA-AACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................TGGTAAGAAGTAGGTC------GTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21147.004700000000000000000000000000000000000000000000000000000004700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCA-ACGGACA-CCGAAGGT......................................................................21143.004300000000000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TC-AAGTCAGTACGA----------GAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20127.002700000000000000000000000000000000000000000000000000000002700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TAGGTC------GTCTAGGTAGAAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21124.002400000000000000000000000000000000000000000000000000000020400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ATGTCATGGTAAGAAGTAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20119.001900000000000000000000000000000000000000000000000000000001900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGTTTAGATCAAAG---GTGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21113.001300000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTATAT----AAACAG----------------------------CGTTCG......................21112.001200000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----AAACAG----------------------------CGTTCGCGAACGGTCGCCT.........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................TCAATGTCATGGTAAGAAGTAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................ACGA----------GAAAGGTCTCAATTTGA-AATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-ACGGACA-CCGAAGGTATAT----AA............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT----AAACAG----------------------------CGTTCGCGAAC.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----AAACAG----------------------------CGTTCGCGAACGGTCGCCTT........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TTCAATGTCATGGTAAGAAGTAGGTC------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTCCAAA---ACACCAATCC-TAACAAG-CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------CGTTCGCGAACGGTCGCCT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCA-ACGGACA-CCGAAGGC......................................................................2111.0010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AGAAGTAGGTC------GTCTAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GTCAGTACGA----------GAAAGGTCTCAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCCAAA---ACACCAATCC-TAACAAG-CC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................A---TTTTAATACA-----A------------------------------------------------------------------------------------------------GGT-ATG..........................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACAAGGGTCTTA-----AATTCTAAA---ACACCAATCCCTAGCAAG-CCTTG------------------------------G---A--------------------TTATGTGAGTATAGATCAAGG---GTGGCATTGTAATCAAAGTCAATGTAA-AAGTAGGTT------GTCTTGCTAGAGAATTTCATTCAGCCGGTC-AAGTCAGTACGA----------TAAAGGTCTCGATTTGA-AATTGTCTT--AAAAATATTTTATTGTTTTGTATTGTATTGTGGTGAGTTAAAAGCATAAAA-AC----AAGAAAAAAAAGTGCTAAA---A------AAGCT----------------------------------------------------------------------------------------------------------TAAACCTAAAATAAAAAAAAAA---------TCC---------------AAAAACATTT------CGGTATAAATG-TTTGCTATGTATTAAAGCGTTA--GAAA------------------TT--CTTTGTGGTATTTTTTAGTGCTTTTTA-ACCTAGA-CCAAAGGTATAT----AAGCTG----------------------------CCTTCGCGCACGGTCCCATTT-AA-AATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ACAAGGGTCTTA-----AATTTCAAACCAACAACAATCT-TAGCAAG-CCTTG------------------------------G---A--------------------TTATGTGAGTAT-GATCAAAG---GTGGCATTGTAATCAATGTCAAGGTAAAAAGTAGGTA------GTCTGGTTAAAGCATTTTATTCAGCCGGTC-AAGTCAGTACGA--------TATAGAGGTCTCGATTTGA-AATTGTCCT--AAAAATATTTTATTGTTTTGT-----ATTGTGGTGAGTTCAACG-G--AA-------------AAATAAGTGCTATATAAA----------------------------------------------------------------------------------------------------------------------------------------------TACATATTC---------------AAAAACATTT------CGGCACAATTT-TTTGCTGTGTATTAAAGTGTTA--CGAA------------------TC---TTTGCGGTATTTTTTAGTACCTTTCA-ACCGAGA-GCAAAGGTATAT----AAGCTG----------------------------CGTTCGCGAACGGTCTCATTT-AA-AATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................ATTCAGCCGGTC-AAGTCAGTACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
droEug1
C-AAAGGTAAAG-------------------------------CAAA-TTTAA------------------------------A---A------------G------TTTTGGTAAAAGTAAAACAAAG---AATGCCTTGAATTTAAATTCAGAGTAA-AAGTAGGTT------GTCTTAGCAAAGAATTTTATTCAGCCAGTT-AAGTCTGTACGT--------TATCAAGGTCTTGTTTAGA-AACTGTTT---CAAAATATTTTATTATTTTAT-----ATTGTGGTGAGTTTTCAAGACGAAC-GTGTAGAC--GAAA-AATTAGGTCAACAA------AATTT--T---TCTTTTT---TAAATATACA---------------------------------------------------------------ACAGTTATT---------AAATGTAAAAAACAAAGATCA---------TTCAAGATTTTGAAAACGTGTAA------CTTCTT----CGATTG-TTTTCAGTGTTTCGGTATGTTTT-A-AAATG---CG----------AA------TAAAGATTTTTTAGTGCATTTTT--GATTGA-CCGAAAGTGTGTAG--GAACCC----------------------------CGTTCGTAGACATTCGT-TTA-AA-AATSizeHit CountTotal NormTotal
No Reads
droBia1
GCAGAGGTCTAA-----AATTGTTAA---ACACCTATATTAAACAAG-CATTG------------------------------G---T------------CGTTCACTTTTGGTAAGTT-----TCAAG---GAGGCATTGAATTCGATGTCACAGCAC-AAGTAGGTC------AGATCGACTAAGAATTTCATTCAGCCGGTC-AAGTCAGTGCGA--------TATCAAGGTCTCGTTTTGA-AATTGTCTT--GAAAATATTTTACTATTTTGT-----ATTGTGGTGAGTTAAGAACAA-AAA-AG----AA--GGAAAAAGTGGTTT-TCGAGGGTT--------ACAA--------------------------------------------------------------------------------TTGCGAGTGCTTAAAAAGTTTC----------------------------------------------------------CACCTC----CGATCG-ATTTCAGTGTATTGGTGTGATTTTG-AA-------------------ATTG--TTTGGCATTTTTTAGTACGTTTTA--CGCAGA-CCGAGGGTATAT----AAGCCA----------------------------CGTGCGCGAACGGTCCCATTT-AA-AATSizeHit CountTotal NormTotal
No Reads
droTak1
TA-------CAA-----AATTATAGA---ACACAAAT-------------TTG------------------------------G---A------------CTTTTGATTTTGGTAAGTG-----CAAAG---GTGGCGTTGCATTCGGTGTCACAGTAA-AAGTAGGTT------TTCTCGGCAAAGAATTTCATTCAGCCGGTC-AAGTCAGTGCGG--------TATCAAGGTCTCGTTTTGA-TATAGTCTT--GAAAATATTTTATTATTTTGT-----ATCGTGGTGAGTTGAGAAAA-------A----AG--GAAAAAAGTGAGTTGGCTA------AAATT--AAAATATATTT---TGGA-----A---------------------------------------------------------------ACAGTTGTTAAAAAG----------------------------------------------------------TTTTGCCACC----CAATAG-TTTTCAGTGTATTGATGTAATTT------------------------------ATCGGTATTTTTTAGTACTTTTTA----TATA-CCGAGGGTATAT----AAGCCC----------------------------AGTCCGCGAACGGTCCTATTT-AA-AACSizeHit CountTotal NormTotal
No Reads
droEle1
GCAAAGGTACAG-----GCGAATACT---ACAACTGTTTTGAACAAAACTTTG------------------------------G---A------------A-------TTCGGTAAGTGTAGATCTAAT---CTTCCTGTGAAATTACTGTCAATGTCA-A--------------------------AATTTTCTTCAAGTGATCAAAGTCAGTACGG--------TATCGAGGTCTT-TTTTAA-AATTGTTCCTTAAAAATATTT--TTACTCTGC-----ATTGTGGTGAGTAAGCAGTGAAAAAACC----TTGAAAATTCAGCG--------T------ATAGG--AAAAT---ACGTATCACT-----ATATACTTAT-------------------------------------------------------------------------------------------ATTTACGCGAG-TC---------------AAAAATCATT------TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCAAAGGTGGAA-----AGTTATTTC---TCTTTTGTTTGGAATAAGACCTTG------------------------------G---A------------A-------TTTCGTAAGTCTAGATCAAGT---GTGGCCCTGAATTTAGTGTCAAAGTAA-AGGTAGCTT------GTCTTGGCTGGGAATTTCATTCAGCCGGTC-AAGTCAGTACGATAATACGATATTGAGGTCTTGTTTTGA-AATTGTCTTT-TAAAATATTTTATTACTTTGA-----ATTTTGGTGAGTTAATAAAA--AAA-AC--------------------------------------------------CATTTACT-----CTTTATTCATAACAACGCAAACCAATAATAACTCAATAATTTTAATGCATATATTAAAATGTTGAAATTGTTTAAAAAATTAT----------------------------------------------------------CTTCCA----TGATTA-GTTTGAGTGTACTGGTGTATTTTAC-AAATATAGCATATGTTTTAAAA--A--TGTAGCAATTTTTAGGACTTTTTT--TGTTGACTCGAGGGTATAT----AAGCCT----------------------------GTTACGCGAACGGTCTCATTCAAA-AACSizeHit CountTotal NormTotal
No Reads
droFic1
TAGAAG-TAAAA-ATAT----ATA-----------------TATAAG-TT----------------------------------------------------------TTCGGTAATTGTGAATCAA-A---GTAGCTGGGAATTTTATGTAAACATTA-AGGTAGGTT------GTCTTGGCAAATGATTTTATTCAGCCGGCG-AAGTCAGTACGA--------TATCGAGGTCTCGTTTTAA-AATTGTCTT--TAAAATATATAACCATTTCCT-----ATTGTGGTGAGTTCACAAAA--AAA-GTTTAAAA-AATATTTGAAG--------G------AAAGG---AAAT---TTGGAT----------------------------------------------------------------------------------------------------------------------------------TTAAAATTATAAAACTCTT------CCG-ATAATTC-ATTTCAGTGTATTTTGGGG-------AA------------------AG------TTGCCATTTTTTAGTGGGTTTTTTTTGGTGC-ACAAGGGTATAA----AAGAGC----------------------------CGTCCGCGAACGGTCCCATTTCAA-AATSizeHit CountTotal NormTotal
No Reads
droKik1
ATAG---TTTTC-----GGCACTCAA---AATCGAATTT-AAGCTGA-TTTCGTTTAACTT----------------------------------------------TATCGGTAAGCAAATATCAAAC---ATGGCCAAGCATTTAGTTTCAAAGTCAAATGTTGATTTCTAGAATCTAGACAAAGCATTCGAATCAGTCGGTC-AAACCAGAACGT----------A-----TATCGAATTGA---TCTTTTT--GAATATATTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCAAAGATTAAAAAAAT----ATA----------------------------GTTAAACATCATCG--TAAATCAAAGATACAGTTGATATTATTGTCAACGGTCAATTTTGGTGAGTA-----GAAAA-TCTGTGTAAAGAATTCAGTGTCA-------AAGCATGTT------TCATTGAGAAAGCATTCGATTCAGTCAGTC-AAGTCATTGCAT--------T-GAGAGATATCGTTTTAA-AATTGTTTTAAAAAAATATTTCAACATTTTAT-----TTTGTGGTGAGTTTCTGAACT-------------------------TTTT-TATAGTGTTA--------AAA--------------------------------------------------------------------------------CTTAGTGTG---------------------------------------------------------------------------------------------ACCTTATTGGATAAGTTTTG-AAATA-------------------G--AGTGACC----------------------ATA-GT----GAGAATACACCAAAAATATCCGAAGATACGATATTTCGTTTTTGGTGATACTCCCAGTAGCAATT-AC-ATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGATACTCCCAGTAGCAAT........2311.001000010
droBip1
GCAAAGATTAAAAAAAT----ATT----------------------------AAAAAATATCATCTCATATAACAAAGATTCAGTTGATTTTGTTGTCAACAATAAATATTGGTAAGTA-----GGAAATTCATTGTGAATAATTCAGTGTCA-------AAGTATGTT------TCACTGAGAAAGCATTCGATTCAGTCGGTC-AAGTAATTTCA---------TAGAGAGATCTCGTTTTAAAAATTGTTTT--AAAAATATTTCATCGTTTTGT-----TTTGTGGTGAGTTTCCAAAAAATTT---------------------------ATATTGTTA--------ATT--------------------------------------------------------------------------------CCTAGAGTG---------------------------------------------------------------------------------------------ACCTTAATGGTT-----GTA-TAACT------------------------------------------------GAGTGA-CCAGGGGTGGCTAAA-AAAAAATACCACAAGGTACGATATTTCGATTTTGGTGATACTCATAGTAGCCATT-ACAATCSizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 12:27 AM