ID:

dsi_17263

Coordinate:

2r:5528973-5529214 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-46.3	-46.1	-46.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACTCCGGGATTCGATGGGGGCCTTAAGGCCTCCTACCGAGTCCGTTATAGGTGAGTGATATTCGGACATTCATAACATGCACAGGAAACAATTTTTAAAAGATTTCTGTAGAGCCATTCATCTAAGTTATAAGTGTTAACAATATGACACAATTTTTTAGCAAAAAAATCATATTCATTAAATTAGCGCTACTCTTGAAGATTCAGAAGCGTCCGTTTTCCACATTCTCGCCGTTTGCAATTATCAAGGGTCCTGGCAATAATGAAATTGCACTCTGCCTTCTCATTTGCAGGATGGCCGACCGCGAGCAGTACAAATACATCGATGGCCTGCCCAACAGCC ************************************************((((((((....(((((((((((....(((.(((((...((((((...))))))....((((........)))).......((((((((....((((....(((((((....))))))).....))))....)))))))).(((((((.((((((((.(((.................)))..)))).)))).)))))))))))))))...)))))..))...)))).....))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	M024 male body	GSM343915 embryo	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	M023 head
............................................................................................................................................................................................................................................................................................................................ATACATCGATGGCCTGCC........	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TAATGAAATTGCACTCTGCCT..............................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................TCTTTTGCAGGCTGGCGGACCG......................................	22	3	1	1.00	1	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................TTTGAAGATTCAGGAGCGTCG................................................................................................................................	21	3	1	1.00	1	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AGTACAAATACATCGATGGC.............	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.....................................................................................AAAAAATTTTTAAAAGATT..............................................................................................................................................................................................................................................	19	1	4	0.25	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTAGCAATAATGAAATTG........................................................................	18	1	5	0.20	1	0	0	0	0	1	0	0	0	0
.....................................GAGTCCGGAAGAGGTGAGTG.............................................................................................................................................................................................................................................................................................	20	3	5	0.20	1	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CTAGCAATAATGAAATTGG.......................................................................	19	2	6	0.17	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ACAAATATATCGCTGGCCTA..........	20	3	10	0.10	1	0	0	0	0	0	0	1	0	0
..................................................................................................AAGATTTCTGTGGAG.....................................................................................................................................................................................................................................	15	1	20	0.10	2	0	0	0	0	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................AGGATGGCCGAGCGCCA...................................	17	2	12	0.08	1	0	1	0	0	0	0	0	0	0
......................................................................................................................................................AGTTTTTTAGCAAAAAAA..............................................................................................................................................................................	18	1	12	0.08	1	0	0	0	0	0	0	0	1	0
.................................................................................................AAAGATTTCTGTGGAG.....................................................................................................................................................................................................................................	16	1	12	0.08	1	0	0	0	0	0	1	0	0	0
....................................................................................................GATTCCTGTAGCGCCAGTC...............................................................................................................................................................................................................................	19	3	13	0.08	1	0	0	0	0	0	0	0	0	1
..............................................................................................................GAGCCAGTCATGTAAG........................................................................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................AATAGCGCTACTCTT..................................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0	0	0

Anti-sense strand reads

TGAGGCCCTAAGCTACCCCCGGAATTCCGGAGGATGGCTCAGGCAATATCCACTCACTATAAGCCTGTAAGTATTGTACGTGTCCTTTGTTAAAAATTTTCTAAAGACATCTCGGTAAGTAGATTCAATATTCACAATTGTTATACTGTGTTAAAAAATCGTTTTTTTAGTATAAGTAATTTAATCGCGATGAGAACTTCTAAGTCTTCGCAGGCAAAAGGTGTAAGAGCGGCAAACGTTAATAGTTCCCAGGACCGTTATTACTTTAACGTGAGACGGAAGAGTAAACGTCCTACCGGCTGGCGCTCGTCATGTTTATGTAGCTACCGGACGGGTTGTCGG ************************************************((((((((....(((((((((((....(((.(((((...((((((...))))))....((((........)))).......((((((((....((((....(((((((....))))))).....))))....)))))))).(((((((.((((((((.(((.................)))..)))).)))).)))))))))))))))...)))))..))...)))).....))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	GSM343915 embryo
.....................................................................................................................................................................................................TTCTAAGTCTTCGCAGGCAAAAGGTGT......................................................................................................................	27	0	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................TAATCGTGCTACAGGCTGGC......................................	20	3	3	0.67	2	1	0	0	1	0
..................................................................................................................................................TGTGTTAAAAGAGCGTTTTGTT..............................................................................................................................................................................	22	3	5	0.40	2	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................AACGTGCTACAGGCTGGC......................................	18	2	3	0.33	1	1	0	0	0	0
.................................ATGGCTCTGACACTATCCA..................................................................................................................................................................................................................................................................................................	19	3	3	0.33	1	1	0	0	0	0
...................................................................................................................................................................................................................................................AGGTCCCAGGACCGCTGTTACT.............................................................................	22	3	4	0.25	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................AACGTGCTACAGGCTGG.......................................	17	2	9	0.22	2	2	0	0	0	0
....................................................................................................................................................................................................................................................GGTCCCAGGACCGCTGTTACT.............................................................................	21	3	5	0.20	1	0	0	1	0	0
..................................................................................................................................................TGTTTTAAAAGATCGGTTTTTT..............................................................................................................................................................................	22	3	7	0.14	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................TAACGTGCTACAGGCTGGC......................................	19	3	16	0.13	2	2	0	0	0	0
................................................................................................................................................................................................................................................AAAAGGTCCCAGGACCGTT...................................................................................	19	2	9	0.11	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................ATCGTGCTACAGGCTGGC......................................	18	3	20	0.10	2	0	0	2	0	0
.......................TTTCCCGAGGCTGGCTCA.............................................................................................................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	1	0	0
................................................................................................................CAGTAAGGAGATTCAA......................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0

Generated: 04/23/2015 at 04:02 PM