ID:

dsi_1723

 Coordinate:

3l:11661121-11661359 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.9 -42.9 -42.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCTACTTGGCGCCGTGCTATTCGTGGCAAGCGCAAATGGAGCTGCCATCGTAAGTTTCCGAATCGTTAATGAATCTCACCGAGAATTGTTGCTTCTGTGCTTTTGAATGGAACTAGAGTAGTGTAATGTAAATGAACTCGGTTCGAAAAGTAGGCGATAAGACATAATTTGACCAAGGTCAGTTCTTACAAGCAGCATCTAATCGGGCACACTTGCTGAGACCCTTTCGAATGAATATAGATTAGACTGACATTAGCATTGAATTTAAATCGATGTATTAACTTTCAGGAAAATGAGGCTACTAGTCTGAACGACTTGCAGCGGGAGAAGAGAAGCGG
**************************************************.............(((((..(((((((((((((....((((((((...(((((.......(((((.((((.((.........))..))))))))).......))))).(((((......(((((....))))).))))).)))))))).....))))(((....))))))))....)))))))))............((((..((((((((((.......)))))))..)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................................................................................................................................................................................................CTGAACGACTTGCAGCGGGA............ 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
....................................ATGGAGCTGCCATTGT............................................................................................................................................................................................................................................................................................... 16 1 10 3.60 36 0 36 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GGTATTAACTTTCAGGAA............................................... 18 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GAGGCTACTAGTCTGAACGACTT..................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GAGGCTACTAGTCTGAACGACTTGC................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CTGAACGACTTGCAGCGGGAGAA......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................AACGACTTGCAGCGGGAGA.......... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......TTGGCGCCGTGCTATTCGTGGCAAG.................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CTGAACGACTTGCAGCGGGAGA.......... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ACTAGTCTGAACGACTTGCAGCGGGA............ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CTGAACGACTTGCAGCGGGAG........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................AATGAGGCTACTAGTCTGAACGAC....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AAAGTAGGCGATAAGACATAATT......................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CTGAACGACTTGCAGCGGGAGG.......... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................GTCTGAACGACTTGCAGCGGGA............ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ATGAGGCTACTAGTCTGAACGACT...................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................ACTAGTCTGAACGACTTGCAGCGGGG............ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................ATTAACTTTCAGGAA............................................... 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CTGAACGACTTGCAGCGGGAGAAGAGA..... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......TGGCGCCGTGCTATTCGTGG........................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......TGGCGCCGTGCTATTCGTGGCAA..................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................ATGGAGCTGCCATCG................................................................................................................................................................................................................................................................................................ 15 0 5 0.60 3 0 3 0 0 0 0 0 0 0 0 0
....................................ATGGAGCTGCCATTGTAA............................................................................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................TGACCAAGAATTGTTGCCTCT.................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
....................................ATGGAGCTGCCGTCGTGAGA........................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................GCATCTAATCGGGAA................................................................................................................................. 15 1 10 0.30 3 0 0 0 0 0 0 3 0 0 0 0
...............TACTGTTCGTGGCAAGC................................................................................................................................................................................................................................................................................................................... 17 2 20 0.20 4 0 0 0 0 0 0 0 4 0 0 0
...........................................................................................................................GTAACGTAACTGAACTCGGA.................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................GTAATGAAAGTGAACTAGGT.................................................................................................................................................................................................... 20 3 12 0.17 2 0 0 0 0 0 0 0 0 2 0 0
...........................................................................................................................................................................................................................................................................................................CTACTAGTAAGAACGAC....................... 17 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
....................................ATGGAGCTGCCATGGTAC............................................................................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
................................GCACATGGAGCTGCCA................................................................................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................ATAGGTATTAACTTTCAGGAA............................................... 21 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................ACATTAGCATGGAAT.......................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 1 0 0 0 1
..............................................................................................................GAACTAGAGTAGCGAAATGG................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
......TTGGCGCAGTGCTAT.............................................................................................................................................................................................................................................................................................................................. 15 1 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................ATAGGTATTAACTTTCAGGA................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
...................................CATGGAGCTGCCATTGTA.............................................................................................................................................................................................................................................................................................. 18 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0
....................................ATGGAGCTGCCATTGTAT............................................................................................................................................................................................................................................................................................. 18 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
....................................ATGGAGCTGCCATTGTAG............................................................................................................................................................................................................................................................................................. 18 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
....................................ATGGAGCTGCCAACG................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................GTTGCTTCTGTGCAT............................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TCAGAACGACCTGCAGC................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................GCAACGTAACTGAACTCGG..................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
....................................ATGGAGCTGCCATCA................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
...................................AATGGAGCTGCCGTC................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACGATGAACCGCGGCACGATAAGCACCGTTCGCGTTTACCTCGACGGTAGCATTCAAAGGCTTAGCAATTACTTAGAGTGGCTCTTAACAACGAAGACACGAAAACTTACCTTGATCTCATCACATTACATTTACTTGAGCCAAGCTTTTCATCCGCTATTCTGTATTAAACTGGTTCCAGTCAAGAATGTTCGTCGTAGATTAGCCCGTGTGAACGACTCTGGGAAAGCTTACTTATATCTAATCTGACTGTAATCGTAACTTAAATTTAGCTACATAATTGAAAGTCCTTTTACTCCGATGATCAGACTTGCTGAACGTCGCCCTCTTCTCTTCGCC
**************************************************.............(((((..(((((((((((((....((((((((...(((((.......(((((.((((.((.........))..))))))))).......))))).(((((......(((((....))))).))))).)))))))).....))))(((....))))))))....)))))))))............((((..((((((((((.......)))))))..)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
.............................................................................................................................................................................................................................................................................................................................ACCTCGCCCGCTTCTCT..... 17 2 20 1.10 22 22 0 0 0 0 0 0 0
.................................................CCAGTCAAACGCTTAGCAATTA............................................................................................................................................................................................................................................................................ 22 3 2 1.00 2 0 0 0 1 1 0 0 0
...................................................................................................CGAAAACTTACCTTGATCTCATCACAT..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................CTGGGCAAGCTTACT........................................................................................................ 15 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................CGCGTTGACCTCGACGGT................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................ATTGAAAGTCCTTTT............................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................AATGGTCCTCGTAGATTAG...................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................ACCTCGCCCTCTGCTCTTAGC. 21 3 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................................................................................TCCGCAAGTCTGTATTA.......................................................................................................................................................................... 17 2 8 0.25 2 0 0 0 0 0 2 0 0
..................................................................................................................................TCTACTTGAGCCTAGCTT............................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................................................................ACCTCGCCCTCTGCTCTT.... 18 2 6 0.17 1 1 0 0 0 0 0 0 0
.......................................................................CTGAGAGTGACTCTGAACA......................................................................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 1 0 0
....TGAGCCGCGGCCCGATA.............................................................................................................................................................................................................................................................................................................................. 17 2 8 0.13 1 0 1 0 0 0 0 0 0
........................................................AAGGCTTAGTAATTA............................................................................................................................................................................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................AGCTGAACCTCGCCCGCTTC........ 20 3 13 0.08 1 1 0 0 0 0 0 0 0
....TGAACCGCTGCAGGAT............................................................................................................................................................................................................................................................................................................................... 16 2 18 0.06 1 0 0 1 0 0 0 0 0
....CGAACCGCTGCACGAT............................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................CCGCAAGTCTGTATTAGA........................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................................................................................................ACCTTGCCCTCTTCTCT..... 17 2 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GTGACTTACATTCAGCTAC............................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 10:34 AM