ID:

dsi_17229

 Coordinate:

3r:19134514-19134821 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.2 -1.2 -0.9

Flybase annnotation

five_prime_UTR [3r_19134145_19134676_-]; exon [3r_19133703_19134676_-]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#####################################################################################################################################################################################################################
ACAGGCGGAAAATCCAGGGGCGTAGCTAGAAGCACCGGGAATTTTTCGGGGTAAGACATTCTAGACGCTTACTATCGCAGTTGCCCGGGAAATAATTATTGAGCATAACTTTCACATTTTGGTGCATATATGTTTTAAAGAATTGTACAAATATTTTTAAAATTTTATGTTTTACCGTCAGGCTTAAGCAAATTGTAATATTGTTATATGTGGCTTGTAATATAAAAAAAGTTGTAATTATGTTTTGAAATCGTCGTCACTAAATATTTATAAGCCTTCCTCGATTATATGACTACTAAGAATATGTTTTCTAAGTGGTAAATCCGCTCCTCTTTAATTCGCGAAAATATTATTGGAGACGCCCCTGGAAACGACTGTTTTAGACGCGGTGCTTTGCAGCACTGGCAC
************************************************************************************************************************************************************************************************************..(((((........)))))..................................****************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTG................. 21 0 1 16.00 16 16 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TTATGTTTTGAAATCGTCGTC...................................................................................................................................................... 21 0 1 10.00 10 10 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TAATTATGTTTTGAAATCGTC......................................................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TATGTTTTGAAATCGTCGTC...................................................................................................................................................... 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TATATGTGGCTTGTAATATAAAA..................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................GGTAAGACATTCTAGACGCTTA................................................................................................................................................................................................................................................................................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTGT................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................CGACTGTTTTAGACGCGGTG................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................CGACTGTTTTAGACGCGGTGT................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTTT................ 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................ATGTTTTGAAATCGTCGTCTT.................................................................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TATGTTTTGAAATCGTCGTCA..................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................TGTTTTGAAATCGTCGTCAC.................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTGA................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................GAATTTTTCGGGGTAAGACAT............................................................................................................................................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TTTTGAAATCGTCGTCACTAA................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................................GAAACGACTGTTTTAGACGCG.................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGTT.................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTGTTATATGTGGCTTGTAATA.......................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................ATTGGAGACGCCCCTGGAAAC.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ATTATGTTTTGAAATCGTCG........................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTGTTATATGTGGCTTGTAAT........................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................AAACGACTGTTTTAGACGCG.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................................CGACTGTTTTAGACGCGGTGC................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................TAAGACATTCTAGACGCTTAC................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................CTGTTTTAGACGCGGTGTTTT............. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................AACGACTGTTTTAGACGCGTT.................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................CGCGAAAATATTATTGGAGACGT.............................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ATTATGTTTTGAAATCGTCGT....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................CTAGAAGCACCGGGAATTTTA.......................................................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTATGTTTTACCGTCAGGC................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................AAGACATTCTAGACGCTTAC................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................ATTATGTTTTGAAATCGTCGTC...................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................AAACGACTGTTTTAGACGCGTA.................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................AGGATTGTACAAATATTTT........................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................GACTGTTTTAGACGCGGTGTT............... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ATATGTGGCTTGTAAAAAAAAAAAA.................................................................................................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TAGCTAGAAGCACCGGGAATT............................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................GACTGTTTTAGACGCGGTG................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................TCCTCTTTAATTCGCGAAAAT............................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TATTATTGGAGACGCCCCTGG........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGT.................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TATGTTTTGAAATCGTCGTT...................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................TTTGAAATCGTCGTCACTAAA................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TTATTGGAGACGCCCCTGGAA...................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GTTTTGAAATCGTCGTCTTT................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
....GCGGAAAATCCAGGGGCGT................................................................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GTTTTGAAATCGTCGTCACTA.................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................CGGGAAATAATTATTGAGCAC.............................................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGTTT................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TTTTGAAATCGTCGTCACTA.................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................ATTGTTATATGTGGCTTGTAA............................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..AGGCGGAAAATCCAGGGGCGTTTT.............................................................................................................................................................................................................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................GACTGTTTTAGACGCGGTGT................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ACCGTGAGGCTTAACC........................................................................................................................................................................................................................... 16 2 11 0.82 9 0 0 9 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................TGGAGAAGCCCCGGTAAACG................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................CTTTACCGTCAGGCTTGA............................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0
....................................................................................................................CTTTGGTGGCTATATGTTTTA............................................................................................................................................................................................................................................................................... 21 3 7 0.29 2 2 0 0 0 0 0 0 0 0
...........ATCCGGGGACGTAGCT............................................................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.25 5 0 0 5 0 0 0 0 0 0
.......AAAAATCCGGGGACGTAGCT............................................................................................................................................................................................................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0
..........................................GTTTCGGAGTTAGACATTCT.......................................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0
..........AATCCGGGGACGTAGCT............................................................................................................................................................................................................................................................................................................................................................................................. 17 2 6 0.17 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................GGAAACGACTGTTTA........................... 15 1 8 0.13 1 0 0 0 0 0 0 1 0 0
........TAAATCCGGGGACGTAGCT............................................................................................................................................................................................................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0
........AGAATCCGGGGACGTAGCT............................................................................................................................................................................................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GAAATCGGCGTCACT................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................TTCTACCGTCAGGGTTGA............................................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 1 1 0 0 0
....................................................................................................................................................................TTATACTCTACCGTCAGG.................................................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 2 0 0 0 0
...........................................................................CGCGGTTGCCCGGGAAACC.......................................................................................................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................CTATACTTTACCGTCAGG.................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................TAACCGTGAGGCTTAA............................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TTTGCTAAGTGGTAA....................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGTCCGCCTTTTAGGTCCCCGCATCGATCTTCGTGGCCCTTAAAAAGCCCCATTCTGTAAGATCTGCGAATGATAGCGTCAACGGGCCCTTTATTAATAACTCGTATTGAAAGTGTAAAACCACGTATATACAAAATTTCTTAACATGTTTATAAAAATTTTAAAATACAAAATGGCAGTCCGAATTCGTTTAACATTATAACAATATACACCGAACATTATATTTTTTTCAACATTAATACAAAACTTTAGCAGCAGTGATTTATAAATATTCGGAAGGAGCTAATATACTGATGATTCTTATACAAAAGATTCACCATTTAGGCGAGGAGAAATTAAGCGCTTTTATAATAACCTCTGCGGGGACCTTTGCTGACAAAATCTGCGCCACGAAACGTCGTGACCGTG
******************************************************************************************************************************************************..(((((........)))))..................................************************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................................................................................TTCGGAAGGAGCTAATATACT.................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0
..............................................................................................................................................................................GGCAGTCCGAATTCGTTTAAC..................................................................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................AATAACCTCTGCGGGGAC......................................... 18 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.............................................................................................................................................................................TGGCAGTCCGAATTCGTTTAA...................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TTCGGAAGGAGCTAATATACTG................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TTTCGGAAGGAGCTAATATACTG................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCGTTTAACATTATAACAATA......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTTAAAATACAAAATGGCAGT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TATACACCGAACATTATATTT...................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................CACCATTTAGGCGAGGAAAAA......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................ATTCGGAAGGAGCTAATATAC..................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAGTCCGAATTCGTTTAACAT................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGTCCGAATTCGTTTAACATT.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................ATAAATATTCGGAAGGAGCTAATAT....................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATGGCAGTCCGAATTCGTTT........................................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................TCTTCGTGGCCCTTAAAAAGC........................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCACGAAACGTCC........ 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCACGAAACGTC......... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................AAGTCCGAATTCGTTTAACA.................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TTTAGGCGAGGAAAAATTAAGC................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................ATTCGGACGGAGCTAATATAC..................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................AATCGGAAGGAGCTAATATAC..................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TATTCGGAAGGAGCTAATATA...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TAGGCGAGGAAAAATTAAGCG.................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTCAACATTAATACAAAACTT............................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................ACTGACGATTCTTATACAAAA.................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AATGGCAGTCCGAATTCGTT......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................GGCAGTCCGAATTCGTTTAA...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................ATGGCAGTCCGAATTCGTTTA....................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................ATTAACATGTTTATAAAAAT......................................................................................................................................................................................................................................................... 20 1 2 1.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TTAGGCGAGGAAAAATTAAGC................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................ATTTAGGCGAGGAAAAATTAA..................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................TCTGCGCCACGAAAC............ 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................CAGTCCGAATTCGTTTAA...................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................TTCAACGGGCCCTTTATTAA....................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCACGAAAC............ 15 1 6 0.50 3 0 0 1 0 0 1 1 0 0
..............................TCGTGGCTCTTAAAATGC........................................................................................................................................................................................................................................................................................................................................................................ 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................TCGGCGCCACGAAACGC.......... 17 2 6 0.17 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................TTTAGGCGAGGAGATGTTAC..................................................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TTAGGAGAGGAGAAA......................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................................CTTATACAAACGATTCAG........................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................AAAAAAATACAAAATGGCAGT.................................................................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................GGAAGGAGGTCATATA...................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:19134464-19134871 - dsi_17229 ACAGGCGGAAAATCCAGGGGCGTAGCTAG-A-AGCAC----CGGGAA--------------TTTTTCGGGGTA----------------AGAC-------ATTCT-AGACGCTTACT-ATCGCAGTTGCCCGGGAAATAATTATTGAGCATAACTTT-CACATTTTGGTGC------A--------TATATGTT-----------TTAAAG-----------------------AATTGTACAAAT------A-T---------------------------TTT--TAAAATTTTATGTTTTACCGTCAGGC---------------------------------------------------------TTAAGCAAATTGTA--------------------------------ATAT---TGT--TATATGTGGCTTGTAATA-TAAA-A------------------AAAGTTGTA-ATTATGTTTTG-AAATCGT----------------------CGTCACTAAATATT-----------TATAAGCCTTCCTCGATT-------------------------------------------------------ATATGACTAC--------------TAAGA------ATATGTTTTCTAAGTGGTAAATCCGCTCCTCTTTAATTCG--CGAAA-ATATTATTGGAGACGCCCCTGGAAACGACTGTTTTAGACGCGGTGCTTTGCAGCACTGGCAC-----------------------------
droSec2 scaffold_0:19941952-19942358 - ACAGGCGGAAAATCCAGGGGCGTAGCTAGCA-AGCAC----CGGGAA--------------TTTTTCGGGGTA----------------AGAC-------ATTCT-AGACGCTTACT-ATCGCAGTTGCCCGGGAAATAATTGTTGAGCATAACTTT-CACATTTTGGTGC------A--------TATATGTT-----------TTAAAG-----------------------AATTGTACAAAT------A-T---------------------------TTT--TAAAATTTTATGTTTTACCTTCAGGC---------------------------------------------------------TTAGGCAAATTGTA--------------------------------ATAT---TAT--TATATGTGGCTTGTAATAATAAAAAAGTTGTACATAAATAAATAAAG------------------------T----------------------TGTAACTAAATATT-----------TATAAGCCTTCCTCGATT-------------------------------------------------------ATATGACTAC--------------TAAGA------ATATGTTTTCTAAGTGGTAAATCCGCTCCTCTTTAATTTG--CGAAA-ATATTTTTGGAGACGCCCCTGGAAACGACTGTTTTAGACGCGGTGCTTTGCAGCACTGGCAC-----------------------------
dm3 chr3R:19583680-19584056 - ACAGCCGGAAAATCCAGGGGCGTAGCTAGCA-AGCCC----TGGGAA--------------TTTTTCGGGGTA----------------AGAC-------ATTCT-AGACGTTAACT-ATCGCAGTTGCCCGGGAAATAATTGTTGAGCATAATTTC-CACATTTTGGTGC------A--------TATACGTT-----------TTAAAG-----------------------AAATGTACAAAT------A-T---------------------------TTT--TAAAATTTTATGTTTTACCGTCAGGC---------------------------------------------------------TTAGGCAAATTGTA--------------------------------ATAT---TAT--TAAATGTAGCTTGTAATAATAAAAA------------------AAAGTTGTA-ATTAAGTTTTG-ATATCGT----------------------CCTGACTAAATATT-----------TATAAGCCTGTCTCGATT-------------------------------------------------------TTATTAC------------------------------------------------------TCCTTTTTAATTCG--CGAAA-ATATTTTTGGAGACGCCCCTGGAAAAGACTGTTTTAGACGCGGTGCTTTGCAGCACTGGCAC-----------------------------
droEre2 scaffold_4820:8460473-8460913 + ACAGGCGGAAAATTCAGGGGCGTAGCTAGGA-AACCC----CGGGAA--------------TTTGTCAGGGTACTCCTTAAAAAAT------TTAGATAGATCCT-AGGCATTTAATAACCGCAGATACCCGGGAAATAGTTGTTTAGCATAATTTCATACATTTTGGTGC------T--------AAAATATG-----------TGAAAG-----------------------TGTTGTACAAAG------C-TTTAGAAAATTTTG--------------TTT--TAAAATTTAATGTTTTACCGTTGGAC---------------------------------------------------------TTGAATAAATTGCA--------------------------------ATAC---TC-------TGTGATTTGTAATAATAAAGA------------------ATAGTAGTG-ATTGTATTTTG-ATATCAT----------------------TCTAACTAAATATC-----------GATAAGTCTTCTTCAATTGC---TTTCA------------------------------------------------GTAGGAT--------------AGAGA------ATATGTTTTC-TACTGATAAATCCGCTGCACTTGGACCCC--CGTTA-ATATATTTGGAGACGCCCTTGGAAACGACTGTTTTTGACGCGGTGCTTTGCAGCACTGGCAG-----------------------------
droYak3 3R:20490120-20490555 - ACAGGCGGAAAAGCCAGGGGCGTAGCTAGGA-AGCCC----CGGGAA--------------TTTTTCGGGATACCACTTTAAATATGGGGGGT-----ACATGTTAGGGTGTTCACTAATCGCAGATGCCCGGGAAATAATAGCTTAGCATAATTTC-CACATTTTGGTGC----TAA--------AATATGTT-----------ACAAAG--------------------TAGAAAT--------------G-TTTTAAAAATATAT----------------TTGAAAAATTTAATGTTTTACTGTTGGTA---------------------------------------------------------TTAAGCAAATTGTA--------------------------------ATAT---TGT--A--ATTTGATTTGTAATAATAAA-A------------------AAAGTTGCG-CTTGCATTATG-ATATCAT----------------------CCTGACTAAATATC-----------AATACGCCTTCTTCGAGT-------------------------------------------------------TTTGTACTAC--------------AAAGT------ATATGCTTTCCCAGTGATAAAACCGCTGCAATTGTATCCC--C--AA-ATATTTTTGGAGACGCCCCTGGAAACGACTGTTTTGGACGCGGTGCTTTGCAACACTGGCAC-----------------------------
droEug1 scf7180000409798:803894-804371 + ACAGGCGAGA-GTGCAGAGGCGTAACTGGAC-AGCTA----TGTATA------TCTCAATA------------CCCCCAAAA------GGGGC-------TCATT-AGATTCCTAATAATCAAAGGAGGCAGGAGAAATATTGCTTTGTTTTAATTATAATATTTTAGTAA----AAT--------AATTT--G---------TATG----ATATA----TACAAT-GAAATAAAATT---------------ATTCAAAAACTATATAATA------------------AATTTAATGTATGATTTAGCGGCTTTGATTTCTTTAAATAAATCA----------ACTTAA--ATGCGCAAC--------TTAATCAAACTATTAGTTTTTTC-----------------------------------------------------------A------------------AAAATTGTA-ATTACATTTA----ATCGTGAAGTGTAATTTCGATTTTTGTTATATTAAAGCACAAATAAATTCATTATTAACTTGCCTTAAAA-------------------------------------------------------T---------AATCTC--------GCAAA------AAGTAATATT-TAGTGCTCAAGCTGGCCGGGTTGATCCCC--CTTAT-ATATTTTTGAAACTGCCCATGACCACGACTGTTTTCATTGCGGTGCTTTACAACACTGGCGC-----------------------------
droBia1 scf7180000302075:5139511-5139946 - ACAGGCTGATAAGGCATGGGCGCAGGCAAGG-GGTAC----CGGAAG-CTGTCGCCCAAAACCC-----------CCCAAAA-----AGGGGT-------ATTTG-GGGCACAAGCTAATCGCAGTTAGCAGGGAATTAATT----TGCATAGTTTG-TATTTCTGTTTAC-AGAAACATTTTATAAAAT-----------CTCGAA----AAATAAATAAAAA-----------------------------AAACAAAAACAATTATTATAATTA-------------AATTTTAAGTGCATTG-------------------------------TCTTAAAAATT--------------CCACAATATCTTTAAATTTAAA--------------------------------AAACAGTAACCTA--AGTTGGAT----------------------------------------------------------TAT----------------------TC-AACTTAATG------TCAACTG-------------TAATTGC---ACCTA-AAAAACAAAAATGTGCCTGCTATTAAACGTTAATTTTTTACAGTGTT---------------------------------TTTTCTTCTTTGGCG-----------------AAC-CCC--CGGTTGTGATTTTTACCACCGCCCTTGACCACGACTGTTTTCAATGCAGCGCTTTGCAACACTGGCCC-----------------------------
droTak1 scf7180000415765:1341550-1341955 + ACAGGCGGAAATTGCAGGGGCGCAGTCAGGGAAAC-T-------------GTTGCCCAGAACCC-----------CCCAAAA-----AGGGGT-------CTTCC-GGGAGCAAACCAATCGCAGCTGGCAGGGCAATAAGGGATATATTCATTTTTAAACTTTTTGGTAA----AAA--------ATAAT--A-T-----AT--TGAAAG----G--------GA-CAAAAAA----------ATTAG----GCCCGAAAACTAATTTTGAAATTG-------------ATTTTT---------------------------TTTATTTAAA-A----------ATTTAAAAATCCGT-TCTCATAATTGTTAGAAATTCATA--------------------------------ATAT---AGCCTA--AAGTGTAATGTAATG----------------------------------------------------------------------------------------------ATAACAT-------------TATTTGTGTATCCT-CAAATATACAATT--------TAGAAAAC----ATTTCTTG--------------------------------------------------CAGTGCCTAACCTTCT------CACCCCC--TGTGAATATTTATATGCGCCGCCCTTGGACTCTACTGTTTTCAATGCGGCGCTTCCCAACACT----------------------------------
droEle1 scf7180000486474:635677-635922 - ACAGGCGGAAAGTGCATGGACGTAGTTGGGG-GCCTC----TCAAAAC--------CAATG------------CTCCCAAAA-----AGGGG-----------------ATCATTTTAAACGCAGGTGGCTGGGAAACAAGTGCTTAGGCTTATGTT-TTCGTT-----GTAAGCGA-ATTGTATACATA-----------TGTAAG----ACATAATTAAAAAAT-CAAATAA----------AC-----CTTTTCGAAAATAAATTCATA------------------AATCTTAGGTATACTT-------------------------------TTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATTTTGGTT---------------------TCA--AATT---ATTTTCGGTAAATATTT-----------------------------
droRho1 scf7180000777205:35114-35233 - TAATAAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTCCAGTGTTG---------------------------------------------TAATACATATTTCCCTTTTGAC-CCCTGCATAG-GTTTTTCTCGCCCCGTCCTTGGACACTTCTGTTTTCGGGACTACGCTTCGCAACACTGGCCT-----------------------------
droFic1 scf7180000453800:1754669-1754719 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCCCTTACATACGTCTGTTTTCGATGCGGTGACTTGCAACACTGGCCA-----------------------------
droKik1 scf7180000302639:2992988-2993274 + ACAGGCGGAA-GTCCAGGGGCGTAGCTCAGG-GGTGATAAACAGG--------GCCTAAAATC------------CAAGATA------AGGGT-------TGT---GGCTGTTCA---T---------TTGGGTAAATTCTTGCT------------------------GTAAA--T-ATTGCACTTTAT-----------TTTATT----TTATTTT---------------------------------------------------------------------------------------------------------------------------------TTAATAATCTAA-TCTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT-CAAATAAATATAT--------TATA----------TTTTTA--------------------------------------------------CATTAGTAAATCTTA--------AC-CCCT-CCTATGAGCATTCCAGCTACGTCCGTGAATCCGTCTGTTTTCGCCGCGTCCCTTTGCAACACTGGCCAGTTACTTGCGCCTATTCACAACACTGGAC
droAna3 scaffold_13340:19949552-19949892 + ACAGGCGGAATACCCAGGGTCGCCGGAACAGGGGG-T---CAAGAA-CCATTCACCTAGAACTG-----------------------------------------------------------------------------------------TTAT-TTTA-----CTG------A-ACTGA-----------ATATATAAATAA-------------------A-TAAGTA---------------GGCTAT-CTTAGAACTAAATTCGAAACAAAATA---------------ATGTA--------------------------TTTATA-ATTTTTTA--------------------------------------------------CAAGTGTCGAAAGCAAGAATTTTCAAGA---TAG--GAAT-TATTCCTATAATA-------------------------TAAGTTGAGTGAAAAATATTTTACAAT------------------------------------------------------------------------------------------------------------------------------------CAGCTTATTATCGCAAATTTATAAAG-----TATAAATATGTTAAATCCACA------GAC-CCCCCCATTAATTGTTTTGAGCGACGCCCGTGTAAACGTCTGATTAAACACCTTCGCTTTCCAGCACTAC--------------------------------
droBip1 scf7180000396413:2445141-2445469 - ACAGGCGGAATTTCCAGGGACGCCCTAACGGGGGC-T---ACAGAA-CCATTCACCTAGAATTG-------------------------CTC----------------------TCCAA------------------------------------------------CCG------A-AATAA-----------ATACTTTACTAA-------------------AAATAGTA---------------GGCTAT-TTTGCATTTAAAATTAAAACCTATTGATTT--TTATTTTTTAT------GCGTCAAAA-------------------------------------------------------------AC------------------------------AAGATTTTT-TTGT---TAT--TTATCTTTTCTTTTAATT-------------------------AAGGATAAG-CTAGATTAATGGACATT------------------------------------------------------------------------------------------------------------------------------------AACCTTTTTATCACTAATTTATAGCA-----TTTAATTATGATAAATTTACA-------AC-CCC--CATTTATTATTTTAAACGACGCCCATTTCACCGTCTGATTAAATTTCATCGCTATACAGCACT----------------------------------
dp5 2:12828457-12828495 - AAACGTATGTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-GGACTGTTCAACACTGGCA------------------------------
droPer2 scaffold_0:7629324-7629362 + AAACGTATGTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-GGACTGTTCAACACTGGCA------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAGGCGGAAAATCCAGGGGCGTAGCTAG-A-AGCAC----CGGGAA--------------TTTTTCGGGGTA----------------AGAC-------ATTCT-AGACGCTTACT-ATCGCAGTTGCCCGGGAAATAATTATTGAGCATAACTTT-CACATTTTGGTGC------A--------TATATGTT-----------TTAAAG-----------------------AATTGTACAAAT------A-T---------------------------TTT--TAAAATTTTATGTTTTACCGTCAGGC---------------------------------------------------------TTAAGCAAATTGTA--------------------------------ATAT---TGT--TATATGTGGCTTGTAATA-TAAA-A------------------AAAGTTGTA-ATTATGTTTTG-AAATCGT----------------------CGTCACTAAATATT-----------TATAAGCCTTCCTCGATT-------------------------------------------------------ATATGACTAC--------------TAAGA------ATATGTTTTCTAAGTGGTAAATCCGCTCCTCTTTAATTCG--CGAAA-ATATTATTGGAGACGCCCCTGGAAACGACTGTTTTAGACGCGGTGCTTTGCAGCACTGGCAC-----------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTG..............................................21116.0016000000000000016000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTTTG-AAATCGT----------------------CGTC............................................................................................................................................................................................................................................................................21110.0010000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-ATTATGTTTTG-AAATCGT----------------------C...............................................................................................................................................................................................................................................................................2115.00500000000000005000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTTTG-AAATCGT----------------------CGTC............................................................................................................................................................................................................................................................................2015.00500000000000005000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TATATGTGGCTTGTAATA-TAAA-A------------------...................................................................................................................................................................................................................................................................................................................................2313.00300000000000003000
.....................................................................GGTA----------------AGAC-------ATTCT-AGACGCTTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300000000000003000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTGT.............................................2213.00300000000000003000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGTTTTAGACGCGGTG..............................................2013.00300000000000003000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGTTTTAGACGCGGTGT.............................................2112.00200000000000002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTTT.............................................2212.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTTG-AAATCGT----------------------CGTCTT..........................................................................................................................................................................................................................................................................2112.00200000000000002000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTTTG-AAATCGT----------------------CGTCA...........................................................................................................................................................................................................................................................................2112.00200000000000002000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTG-AAATCGT----------------------CGTCAC..........................................................................................................................................................................................................................................................................2012.00200000000000002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGTGA.............................................2212.00200000000000002000
............................................GAA--------------TTTTTCGGGGTA----------------AGAC-------AT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTG-AAATCGT----------------------CGTCACTAA.......................................................................................................................................................................................................................................................................2112.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGACTGTTTTAGACGCG.................................................2112.00200000000000002000
...................................................................................................................................................................................................................................................................................................................................................................................................................................T---TGT--TATATGTGGCTTGTAATA-...........................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGACGCCCCTGGAAAC.................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGTTTTG-AAATCGT----------------------CG..............................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................T---TGT--TATATGTGGCTTGTAAT.............................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGACTGTTTTAGACGCG.................................................2011.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGTTTTAGACGCGGTGC.............................................2111.00100001000000000000
.......................................................................TA----------------AGAC-------ATTCT-AGACGCTTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--CGAAA-ATATTATTGGAGACGT...........................................................................2311.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGTTTTG-AAATCGT----------------------CGT.............................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................CTAG-A-AGCAC----CGGGAA--------------TTTTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................TTATGTTTTACCGTCAGGC---------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
........................................................................A----------------AGAC-------ATTCT-AGACGCTTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGTTTTG-AAATCGT----------------------CGTC............................................................................................................................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGACTGTTTTAGACGCGTA...............................................2211.00100000000000001000
......................TAGCTAG-A-AGCAC----CGGGAA--------------TT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTTTTAGACGCGGTG..............................................1911.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCTTTAATTCG--CGAAA-AT.........................................................................................2111.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTGGAGACGCCCCTGG.....................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTGTTTTAGACGCGGT...............................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTTTG-AAATCGT----------------------CGTT............................................................................................................................................................................................................................................................................2011.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-AAATCGT----------------------CGTCACTAAA......................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGGAGACGCCCCTGGAA...................................................................2111.00100000000000001000
....GCGGAAAATCCAGGGGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTG-AAATCGT----------------------CGTCACTA........................................................................................................................................................................................................................................................................2111.00100000000000001000
..................................................................................................................................CGGGAAATAATTATTGAGCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTG-AAATCGT----------------------CGTCACTA........................................................................................................................................................................................................................................................................2011.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TGT--TATATGTGGCTTGTAA..............................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
..AGGCGGAAAATCCAGGGGCGTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGTTTTAGACGCGGTGT.............................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACGACTGTTTA........................................................1580.13100000000100000000
droSec2
ACAGGCGGAAAATCCAGGGGCGTAGCTAGCA-AGCAC----CGGGAA--------------TTTTTCGGGGTA----------------AGAC-------ATTCT-AGACGCTTACT-ATCGCAGTTGCCCGGGAAATAATTGTTGAGCATAACTTT-CACATTTTGGTGC------A--------TATATGTT-----------TTAAAG-----------------------AATTGTACAAAT------A-T---------------------------TTT--TAAAATTTTATGTTTTACCTTCAGGC---------------------------------------------------------TTAGGCAAATTGTA--------------------------------ATAT---TAT--TATATGTGGCTTGTAATAATAAAAAAGTTGTACATAAATAAATAAAG------------------------T----------------------TGTAACTAAATATT-----------TATAAGCCTTCCTCGATT-------------------------------------------------------ATATGACTAC--------------TAAGA------ATATGTTTTCTAAGTGGTAAATCCGCTCCTCTTTAATTTG--CGAAA-ATATTTTTGGAGACGCCCCTGGAAACGACTGTTTTAGACGCGGTGCTTTGCAGCACTGGCAC-----------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................TTATGTTTTACCTTCAGGC---------------------------------------------------------TT......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
ACAGGCGGAAAATCCAGGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
....................................................................................................................T-ATCGCAGTTGCCCGGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGACGCCCCTGGAAACGA...............................................................2211.0010100
dm3
ACAGCCGGAAAATCCAGGGGCGTAGCTAGCA-AGCCC----TGGGAA--------------TTTTTCGGGGTA----------------AGAC-------ATTCT-AGACGTTAACT-ATCGCAGTTGCCCGGGAAATAATTGTTGAGCATAATTTC-CACATTTTGGTGC------A--------TATACGTT-----------TTAAAG-----------------------AAATGTACAAAT------A-T---------------------------TTT--TAAAATTTTATGTTTTACCGTCAGGC---------------------------------------------------------TTAGGCAAATTGTA--------------------------------ATAT---TAT--TAAATGTAGCTTGTAATAATAAAAA------------------AAAGTTGTA-ATTAAGTTTTG-ATATCGT----------------------CCTGACTAAATATT-----------TATAAGCCTGTCTCGATT-------------------------------------------------------TTATTAC------------------------------------------------------TCCTTTTTAATTCG--CGAAA-ATATTTTTGGAGACGCCCCTGGAAAAGACTGTTTTAGACGCGGTGCTTTGCAGCACTGGCAC-----------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................GCATAATTTC-CACATTTTGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CT-ATCGCAGTTGCCCGGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAA-ATATTTTTGGAGACGC...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGAGACGCCCCTGGAAAAGAC..............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCTGGAAAAGACTGTTCC........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTAAATATT-----------TATAAGC................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ACGTT-----------TTAAAG-----------------------AAATGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............TCCAGGGGCGTAGCTAGCA-AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................TTAAAG-----------------------AAATGTACAAAT------A-T---------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAAAAGACTGTTTTAGA.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAAGACTGTTTTAGACG...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACAGGCGGAAAATTCAGGGGCGTAGCTAGGA-AACCC----CGGGAA--------------TTTGTCAGGGTACTCCTTAAAAAAT------TTAGATAGATCCT-AGGCATTTAATAACCGCAGATACCCGGGAAATAGTTGTTTAGCATAATTTCATACATTTTGGTGC------T--------AAAATATG-----------TGAAAG-----------------------TGTTGTACAAAG------C-TTTAGAAAATTTTG--------------TTT--TAAAATTTAATGTTTTACCGTTGGAC---------------------------------------------------------TTGAATAAATTGCA--------------------------------ATAC---TC-------TGTGATTTGTAATAATAAAGA------------------ATAGTAGTG-ATTGTATTTTG-ATATCAT----------------------TCTAACTAAATATC-----------GATAAGTCTTCTTCAATTGC---TTTCA------------------------------------------------GTAGGAT--------------AGAGA------ATATGTTTTC-TACTGATAAATCCGCTGCACTTGGACCCC--CGTTA-ATATATTTGGAGACGCCCTTGGAAACGACTGTTTTTGACGCGGTGCTTTGCAGCACTGGCAG-----------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
ACAGGCGGAAAAGCCAGGGGCGTAGCTAGGA-AGCCC----CGGGAA--------------TTTTTCGGGATACCACTTTAAATATGGGGGGT-----ACATGTTAGGGTGTTCACTAATCGCAGATGCCCGGGAAATAATAGCTTAGCATAATTTC-CACATTTTGGTGC----TAA--------AATATGTT-----------ACAAAG--------------------TAGAAAT--------------G-TTTTAAAAATATAT----------------TTGAAAAATTTAATGTTTTACTGTTGGTA---------------------------------------------------------TTAAGCAAATTGTA--------------------------------ATAT---TGT--A--ATTTGATTTGTAATAATAAA-A------------------AAAGTTGCG-CTTGCATTATG-ATATCAT----------------------CCTGACTAAATATC-----------AATACGCCTTCTTCGAGT-------------------------------------------------------TTTGTACTAC--------------AAAGT------ATATGCTTTCCCAGTGATAAAACCGCTGCAATTGTATCCC--C--AA-ATATTTTTGGAGACGCCCCTGGAAACGACTGTTTTGGACGCGGTGCTTTGCAACACTGGCAC-----------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ACAGGCGAGA-GTGCAGAGGCGTAACTGGAC-AGCTA----TGTATA------TCTCAATA------------CCCCCAAAA------GGGGC-------TCATT-AGATTCCTAATAATCAAAGGAGGCAGGAGAAATATTGCTTTGTTTTAATTATAATATTTTAGTAA----AAT--------AATTT--G---------TATG----ATATA----TACAAT-GAAATAAAATT---------------ATTCAAAAACTATATAATA------------------AATTTAATGTATGATTTAGCGGCTTTGATTTCTTTAAATAAATCA----------ACTTAA--ATGCGCAAC--------TTAATCAAACTATTAGTTTTTTC-----------------------------------------------------------A------------------AAAATTGTA-ATTACATTTA----ATCGTGAAGTGTAATTTCGATTTTTGTTATATTAAAGCACAAATAAATTCATTATTAACTTGCCTTAAAA-------------------------------------------------------T---------AATCTC--------GCAAA------AAGTAATATT-TAGTGCTCAAGCTGGCCGGGTTGATCCCC--CTTAT-ATATTTTTGAAACTGCCCATGACCACGACTGTTTTCATTGCGGTGCTTTACAACACTGGCGC-----------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACAGGCTGATAAGGCATGGGCGCAGGCAAGG-GGTAC----CGGAAG-CTGTCGCCCAAAACCC-----------CCCAAAA-----AGGGGT-------ATTTG-GGGCACAAGCTAATCGCAGTTAGCAGGGAATTAATT----TGCATAGTTTG-TATTTCTGTTTAC-AGAAACATTTTATAAAAT-----------CTCGAA----AAATAAATAAAAA-----------------------------AAACAAAAACAATTATTATAATTA-------------AATTTTAAGTGCATTG-------------------------------TCTTAAAAATT--------------CCACAATATCTTTAAATTTAAA--------------------------------AAACAGTAACCTA--AGTTGGAT----------------------------------------------------------TAT----------------------TC-AACTTAATG------TCAACTG-------------TAATTGC---ACCTA-AAAAACAAAAATGTGCCTGCTATTAAACGTTAATTTTTTACAGTGTT---------------------------------TTTTCTTCTTTGGCG-----------------AAC-CCC--CGGTTGTGATTTTTACCACCGCCCTTGACCACGACTGTTTTCAATGCAGCGCTTTGCAACACTGGCCC-----------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACAGGCGGAAATTGCAGGGGCGCAGTCAGGGAAAC-T-------------GTTGCCCAGAACCC-----------CCCAAAA-----AGGGGT-------CTTCC-GGGAGCAAACCAATCGCAGCTGGCAGGGCAATAAGGGATATATTCATTTTTAAACTTTTTGGTAA----AAA--------ATAAT--A-T-----AT--TGAAAG----G--------GA-CAAAAAA----------ATTAG----GCCCGAAAACTAATTTTGAAATTG-------------ATTTTT---------------------------TTTATTTAAA-A----------ATTTAAAAATCCGT-TCTCATAATTGTTAGAAATTCATA--------------------------------ATAT---AGCCTA--AAGTGTAATGTAATG----------------------------------------------------------------------------------------------ATAACAT-------------TATTTGTGTATCCT-CAAATATACAATT--------TAGAAAAC----ATTTCTTG--------------------------------------------------CAGTGCCTAACCTTCT------CACCCCC--TGTGAATATTTATATGCGCCGCCCTTGGACTCTACTGTTTTCAATGCGGCGCTTCCCAACACT----------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACAGGCGGAAAGTGCATGGACGTAGTTGGGG-GCCTC----TCAAAAC--------CAATG------------CTCCCAAAA-----AGGGG-----------------ATCATTTTAAACGCAGGTGGCTGGGAAACAAGTGCTTAGGCTTATGTT-TTCGTT-----GTAAGCGA-ATTGTATACATA-----------TGTAAG----ACATAATTAAAAAAT-CAAATAA----------AC-----CTTTTCGAAAATAAATTCATA------------------AATCTTAGGTATACTT-------------------------------TTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATTTTGGTT---------------------TCA--AATT---ATTTTCGGTAAATATTT-----------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TAATAAAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTTCCAGTGTTG---------------------------------------------TAATACATATTTCCCTTTTGAC-CCCTGCATAG-GTTTTTCTCGCCCCGTCCTTGGACACTTCTGTTTTCGGGACTACGCTTCGCAACACTGGCCT-----------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGCCCTTACATACGTCTGTTTTCGATGCGGTGACTTGCAACACTGGCCA-----------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACAGGCGGAA-GTCCAGGGGCGTAGCTCAGG-GGTGATAAACAGG--------GCCTAAAATC------------CAAGATA------AGGGT-------TGT---GGCTGTTCA---T---------TTGGGTAAATTCTTGCT------------------------GTAAA--T-ATTGCACTTTAT-----------TTTATT----TTATTTT---------------------------------------------------------------------------------------------------------------------------------TTAATAATCTAA-TCTAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT-CAAATAAATATAT--------TATA----------TTTTTA--------------------------------------------------CATTAGTAAATCTTA--------AC-CCCT-CCTATGAGCATTCCAGCTACGTCCGTGAATCCGTCTGTTTTCGCCGCGTCCCTTTGCAACACTGGCCAGTTACTTGCGCCTATTCACAACACTGGACSizeHit CountTotal NormTotal
No Reads
droAna3
ACAGGCGGAATACCCAGGGTCGCCGGAACAGGGGG-T---CAAGAA-CCATTCACCTAGAACTG-----------------------------------------------------------------------------------------TTAT-TTTA-----CTG------A-ACTGA-----------ATATATAAATAA-------------------A-TAAGTA---------------GGCTAT-CTTAGAACTAAATTCGAAACAAAATA---------------ATGTA--------------------------TTTATA-ATTTTTTA--------------------------------------------------CAAGTGTCGAAAGCAAGAATTTTCAAGA---TAG--GAAT-TATTCCTATAATA-------------------------TAAGTTGAGTGAAAAATATTTTACAAT------------------------------------------------------------------------------------------------------------------------------------CAGCTTATTATCGCAAATTTATAAAG-----TATAAATATGTTAAATCCACA------GAC-CCCCCCATTAATTGTTTTGAGCGACGCCCGTGTAAACGTCTGATTAAACACCTTCGCTTTCCAGCACTAC--------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACAGGCGGAATTTCCAGGGACGCCCTAACGGGGGC-T---ACAGAA-CCATTCACCTAGAATTG-------------------------CTC----------------------TCCAA------------------------------------------------CCG------A-AATAA-----------ATACTTTACTAA-------------------AAATAGTA---------------GGCTAT-TTTGCATTTAAAATTAAAACCTATTGATTT--TTATTTTTTAT------GCGTCAAAA-------------------------------------------------------------AC------------------------------AAGATTTTT-TTGT---TAT--TTATCTTTTCTTTTAATT-------------------------AAGGATAAG-CTAGATTAATGGACATT------------------------------------------------------------------------------------------------------------------------------------AACCTTTTTATCACTAATTTATAGCA-----TTTAATTATGATAAATTTACA-------AC-CCC--CATTTATTATTTTAAACGACGCCCATTTCACCGTCTGATTAAATTTCATCGCTATACAGCACT----------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAACGTATGTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-GGACTGTTCAACACTGGCA------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAACGTATGTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-GGACTGTTCAACACTGGCA------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-GGACTGTTCAACACT..................................2212.002200000
.............C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGT-GGACTGTTCAACACG..................................2211.001100000

Generated: 05/18/2015 at 01:11 PM