ID:

dsi_17219

 Coordinate:

3l:15678936-15679085 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.3 -7.3 -7.2 -7.2

Flybase annnotation

exon [3l_15678719_15678935_+]; CDS [3l_15678719_15678935_+]; intron [3l_15678936_15680198_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATAACAACAATATCAGCACCACCACCACAAACACGATCAGCAACAGCGGCGTAAGTAGCCCAGTGTCCAAATGGACACTCTAACCAGATCACTCACCCCAGGCTATCACAACAAAAACCAAACCGAAACATTCACACTCGAGGAAGCTCTCTTCATAGACTCATTGTTAGATCTCATACCTGTAGTCCTAGCCGGGATTACAGGCCCCATCCACACACGATGTCCACATGCAGTTCACAACCACTCAAAC
*******************************************************************....((............(((((...((....((.((((...........((....(((...........))).))...........)))).))...))...)))))........))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
.....................................................................................................................................................................GTTAGATCTCATACCTGTA.................................................................. 19 0 1 4.00 4 4 0 0 0 0 0 0 0
...................................................................CAAATGGACACTCTAACCAG................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0
............................AAACACGATCAGCAACAGCGGC........................................................................................................................................................................................................ 22 0 1 2.00 2 0 0 2 0 0 0 0 0
...........................CAAACACGATCAGCAACAGCGGC........................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................CATTGTTAGATCTCATACCTGTA.................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
................................ACGATCAGCAACAGCGGC........................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CATGTCCACATGGAGTACACA........... 21 3 4 0.25 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................TTTACTCCTAGCCGGG...................................................... 16 2 20 0.15 3 0 0 0 3 0 0 0 0
..............................................................................................................................................................GCGCATTGTTAGATTTCATA........................................................................ 20 3 7 0.14 1 0 0 0 0 1 0 0 0
......................................................................................................................................................CGTCATAGACTCTTTGT................................................................................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0
..............................................................................TCTAAACAGATCTCTCACCT........................................................................................................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 1 0
...............................................................................................................................................................................ATTCCGGTAGTCCTA............................................................ 15 2 20 0.10 2 0 0 0 0 0 2 0 0
....................................GCAGCAACAGCGGCGTA..................................................................................................................................................................................................... 17 1 10 0.10 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................CCCGGTAGTCCTAGCC......................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
............................................................................GCTCTAAACAGATCTCTCACC......................................................................................................................................................... 21 3 20 0.05 1 0 0 0 1 0 0 0 0
............................................................................................................................................................AGACTAAGTGTTAGATCTT........................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TATTGTTGTTATAGTCGTGGTGGTGGTGTTTGTGCTAGTCGTTGTCGCCGCATTCATCGGGTCACAGGTTTACCTGTGAGATTGGTCTAGTGAGTGGGGTCCGATAGTGTTGTTTTTGGTTTGGCTTTGTAAGTGTGAGCTCCTTCGAGAGAAGTATCTGAGTAACAATCTAGAGTATGGACATCAGGATCGGCCCTAATGTCCGGGGTAGGTGTGTGCTACAGGTGTACGTCAAGTGTTGGTGAGTTTG
******************************************************************....((............(((((...((....((.((((...........((....(((...........))).))...........)))).))...))...)))))........))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..................GGTGTTGGTGTTTGTTCTAGT................................................................................................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0
..................GGTGGCGGTGTCTGTGCT...................................................................................................................................................................................................................... 18 2 11 0.36 4 3 0 0 0 1
...............................................................................................................................................................................................................................GGTGTTCGTCAGGTGTTCGTG...... 21 3 4 0.25 1 0 0 1 0 0
..............................................................................................................................................................CGCGTAACAATCTAAAGTAT........................................................................ 20 3 7 0.14 1 0 1 0 0 0
...........................................................................................................................................................................................................................TACAGGTTCACGACAAGTGT........... 20 3 12 0.08 1 1 0 0 0 0
...........................................................................................................................................................ATCCGAGTACCAATCT............................................................................... 16 2 14 0.07 1 0 1 0 0 0
.............................................................................................................................TTCGTAAGTCAGAGCTCCT.......................................................................................................... 19 3 15 0.07 1 0 1 0 0 0
........................................................................................................................................GAGCTCCTTAGAGACAA................................................................................................. 17 2 17 0.06 1 0 0 0 1 0
...................................................................GTTTGGCTATGAGATTGGT.................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0

Generated: 04/23/2015 at 05:18 PM