ID:

dsi_17214

Coordinate:

3r:4328022-4328171 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

CGTGAGTTAGGTTGCGAACTTTGCTTGGTGAAAACGCAGCGGATTACGAGGTTTGGAAAAACTTTTAATTCGCGTTGAAAAACGGCAGTGCAGTGAAAAACAAAGCAAATTAAATGTACATAAATTCGTACTATTTTATAATAAATAATTTAATTGAGAGCAAGTTCCGGCATGGTGTCAGGATAGCGTGTCCGCGCCAGTGGGCGGCTCAGCCATTAAATTCTTCTGTGATAAGCTGCGTGAACAGCTT ************************************************..((((((...(((((((((..((((....))))....(((..((.....))..)))....((((((((........)))).))))...............)))))))))....))))))..((((((..(((((...))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	M025 embryo	M024 male body	SRR618934 dsim w501 ovaries	O002 Head	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis
...GAGTTAGGTTGCGAACTTTGCT.................................................................................................................................................................................................................................	22	0	1	4.00	4	3	0	0	1	0	0	0	0	0
........................TTGGTGAAAACGCAGCGGAT..............................................................................................................................................................................................................	20	0	1	3.00	3	0	0	3	0	0	0	0	0	0
..........................GGTGAAAACGCAGCGGAT..............................................................................................................................................................................................................	18	0	1	3.00	3	2	1	0	0	0	0	0	0	0
...........................................TTACGAGGTTTGGAAAAACT...........................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................GTACATATATTCGTTCTATTT..................................................................................................................	21	2	1	1.00	1	0	1	0	0	0	0	0	0	0
....AGTTAGGTTGCGAACTTTGCTTGG..............................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.....................................AGCGGATTACGAGGTTTGGAAAAACT...........................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...GAGTTAGGTTGCGAACTTTGCTTG...............................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.......................................CGGATTACGAGGTTTGGA.................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................TTTGCTTGGTGAAAACGCAGCGGATT.............................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
........................TTGGTGAAAACGCAGCGGATTACGAG........................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0
....AGTTAGGTTGCGAACTTTGCTT................................................................................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................TTCTTCTGTGATAAGCTGC...........	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............CGAACTTTGCTTGGTGAAAACG......................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..........................GGTGAAAACGCAGCGGATTA............................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	0	0	1	0	0	0
.............................GAAAACGCAGCGGAT..............................................................................................................................................................................................................	15	0	2	0.50	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................TTCTCTGATACGCTTCGTGA.......	20	3	3	0.33	1	0	0	0	0	0	0	1	0	0
...........................................TTACGAGGATTGGAAGAACC...........................................................................................................................................................................................	20	3	5	0.20	1	0	0	0	1	0	0	0	0	0
..................CTTTGCTTGATGAAAA........................................................................................................................................................................................................................	16	1	7	0.14	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................TCATAAGCTGCGAGAACAGG..	20	3	9	0.11	1	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................TCCGGCATGGTGTAATG....................................................................	17	2	9	0.11	1	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

GCACTCAATCCAACGCTTGAAACGAACCACTTTTGCGTCGCCTAATGCTCCAAACCTTTTTGAAAATTAAGCGCAACTTTTTGCCGTCACGTCACTTTTTGTTTCGTTTAATTTACATGTATTTAAGCATGATAAAATATTATTTATTAAATTAACTCTCGTTCAAGGCCGTACCACAGTCCTATCGCACAGGCGCGGTCACCCGCCGAGTCGGTAATTTAAGAAGACACTATTCGACGCACTTGTCGAA ************************************************..((((((...(((((((((..((((....))))....(((..((.....))..)))....((((((((........)))).))))...............)))))))))....))))))..((((((..(((((...))))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
..........................................................................................................................................................ACTCTCGTTCAAGGCCGTACC...........................................................................	21	0	1	1.00	1	1	0	0	0
......................................CGACTAATGCTGCAAACCTA................................................................................................................................................................................................	20	3	6	0.33	2	0	2	0	0
..........................................................................................................................................................................................GCACAGGGGTGGTAACCCG.............................................	19	3	15	0.07	1	0	0	1	0
.............................................................................................ACCTTTGGTTTCGTTTAAT..........................................................................................................................................	19	2	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 01:35 AM