ID:

dsi_17203

 Coordinate:

3l:7911385-7911534 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7911535_7911619_+]; exon [3l_7911535_7911730_+]; intron [3l_7909841_7911534_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCCCACACTCAACATCCGCCGTCTCGACAACCAACATTCATTGTTATTTATTACCAAGCAAGCAACTAAAAAAAAAAGAAAGCTATCAAAGCAAATAGCGATACCAATAAACGTGTATATATAATTGCATAAATCGAAAGAGTCCTGTCAAACATTTTTTAATTTGTATCTTACCCATACCTCCTCCCACTCGAAACAGCAACGAAATGGAGGACGAGGAACTTTCGGGCATCATTCTGTCCAAGGCCA
**************************************************................................(((((........)))))(((((........(((((........)))))((((.((((((((........)).)))))).))))))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
......................................................................................................................................................................................................AACAACGAAATGGAGGACGAGGAACTTT........................ 28 1 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACGAAATGGAGGACGAGGAACT.......................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0
.......................................................................................................................................CGAAAGAGTCCTGTA.................................................................................................... 15 1 2 1.50 3 0 0 0 3 0 0 0 0
..............................................................................................................................................................................................................AATGGAGGACGAGGAATTTTCG...................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AAATGGAGGACGAGGAACTTTCGGGC................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
..........CAACATCCGCCGTCTCGACAAC.......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................AACAGCAACGAAATGGAGGACGAG............................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................AACTTTCGGGCATCATTCTGTCCAA..... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................ATTCCGTCCAAGGCTA 16 2 20 0.60 12 0 0 0 3 0 0 5 4
.......................................................................................................................................CGAAAGAGTCCTGTAA................................................................................................... 16 1 2 0.50 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................AACAACGAAATGGAGGACGA................................ 20 1 2 0.50 1 0 1 0 0 0 0 0 0
................CCGCCGTCTCGACGACCG........................................................................................................................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................ATTCTGTCCAAGGCTA 16 1 3 0.33 1 0 0 0 0 0 0 1 0
.......................................................................................................................................CGAAAGAGTCCTGTAAG.................................................................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

ACGGGTGTGAGTTGTAGGCGGCAGAGCTGTTGGTTGTAAGTAACAATAAATAATGGTTCGTTCGTTGATTTTTTTTTTCTTTCGATAGTTTCGTTTATCGCTATGGTTATTTGCACATATATATTAACGTATTTAGCTTTCTCAGGACAGTTTGTAAAAAATTAAACATAGAATGGGTATGGAGGAGGGTGAGCTTTGTCGTTGCTTTACCTCCTGCTCCTTGAAAGCCCGTAGTAAGACAGGTTCCGGT
**************************************************................................(((((........)))))(((((........(((((........)))))((((.((((((((........)).)))))).))))))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................AGCTTTCTCAGGACAT.................................................................................................... 16 1 1 78.00 78 61 17 0 0 0 0 0
.......................................................................................................................................GCTTTCTCAGGACAT.................................................................................................... 15 1 2 20.00 40 19 21 0 0 0 0 0
....................................................................................................................................................AGTTTGTAAAAAATTAAACTAAGAC............................................................................. 25 3 1 20.00 20 20 0 0 0 0 0 0
......................................................................................................................................AGCTTTCTCAGGACA..................................................................................................... 15 0 1 12.00 12 11 1 0 0 0 0 0
....................................................................................................................................................AGTTTGTAAAAAATTAAACTAAGA.............................................................................. 24 2 1 11.00 11 11 0 0 0 0 0 0
......................................................................................................................................AGCTTTCTCAGGACATA................................................................................................... 17 2 14 10.07 141 89 51 0 0 0 0 1
.......................................................................................................................................GCTTTCTCAGGACATA................................................................................................... 16 2 20 9.30 186 137 47 0 0 0 0 2
.................................................................................................................................................................................TATGGAGGACGGTGTGCTT...................................................... 19 2 1 5.00 5 0 0 5 0 0 0 0
...............................................................................................................................CGTATTTAGCTTTCTCAGGACAGTT.................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................................................AGCTTTCTCAGGACATT................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................CGTATTTAGCTTTCTCAGGACAGT................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................AGCTTTCTCAGGGCA..................................................................................................... 15 1 2 1.00 2 1 1 0 0 0 0 0
.........................................................................................................................................................................................AGGGTGAGCTTTGTCGTTGCTTTA......................................... 24 0 1 1.00 1 0 0 0 0 0 1 0
........................................................................................................................................................................................GAGGGTGAGCTTTGTCGTTGC............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................ATAATGGTTCGTTCGTTGAT..................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0
.........................GCTGTCGATTGTAAGTAGCA............................................................................................................................................................................................................. 20 3 3 0.67 2 2 0 0 0 0 0 0
.....................................................................................................................................................GTTTGTAAAAAATTAAACTAAGAC............................................................................. 24 3 2 0.50 1 1 0 0 0 0 0 0
................................................................................................................................................................................TTATGGAGGACGGTGTGCTT...................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0
......................................................................................................................................AGCTTTCTCAGGACATTA.................................................................................................. 18 2 6 0.17 1 1 0 0 0 0 0 0
....................................................................................................................................GGAGCTTTCTCAGGACA..................................................................................................... 17 2 17 0.06 1 0 0 0 1 0 0 0
......................................................................................................................................AGCTTTCTCAGGGCAT.................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0
.............................................................TCGTCGATGTTTTTTTTCTT......................................................................................................................................................................... 20 2 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................AGCTTTGTCGTCGCT............................................ 15 1 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 10:32 AM