ID:

dsi_17177

 Coordinate:

2r:18257057-18257206 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.3 -15.8 -15.7

Flybase annnotation

CDS [2r_18257207_18257264_-]; exon [2r_18257207_18257264_-]; intron [2r_18255925_18257206_-]

No Repeatable elements found

mature
  1. 2l:8568158-8568173 +
  2. dsi_17177  2r:18257151-18257166 -
  3. node_89281:584-599 -
  4. node_118028:47-62 +
  5. node_110086:45-60 +
  6. node_134239:169-184 -
  7. node_30937:42-57 +
  8. node_83888:47-62 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACGGCGGCAGGAGTAGCTTTGCTACTTCTAGTGCTAAATCACTCAAGTGGTAGGTTCGATTCTAAATCAAGGATTAAGATCAATGTAAAGTGAAAGTGATCGTGATGGTTAAAGTGTAAAAAAAATAGTTGAAACTACCGAAAACTAAACCACTAAAAAGAAATATGTTTATACATAACACTAAATAAACGCAGATACGTTTGGTGTTTTACGTAATGACTTTCTTTAAACGAAATCTATGAAAAATAG
**************************************************.((.(((.(((.((.((((...)))).)))))))).)).((((..(((..(((...(((((.((.(((.......))).))..))))).)))..)))....)))).........(((((....)))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
.............................................AGGTTGTAGGTTCGACTC........................................................................................................................................................................................... 18 3 20 3.25 65 1 52 0 0 0 12 0 0 0
.........................CTTCTAGTGCTAAATCACTCA............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............AGCTTTGCTACTTCTAGTGCTAAATCA................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............AGCTTTGCTACTTCTAGTG........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................TTGTAGGTTCGATTC........................................................................................................................................................................................... 15 1 9 1.00 9 0 0 8 0 0 0 1 0 0
................GCTTTGCTACTTCTAGTGCTAAATCAC............................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............AGCTTTGCTACTTCTAGTGCTAA.................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................GTGCTAAATCACTCAAGTGAT...................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................GTGAAAGTGATCGTGA................................................................................................................................................ 16 0 8 0.75 6 0 0 0 5 0 0 1 0 0
................................................TCGTAGGTTCGATTC........................................................................................................................................................................................... 15 1 5 0.60 3 0 0 1 0 2 0 0 0 0
..........................................................................................GTGAAAGTGATCGTG................................................................................................................................................. 15 0 10 0.60 6 0 0 0 6 0 0 0 0 0
..................................................GTAGGTTCGATTCTTA........................................................................................................................................................................................ 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0
................................................TCGTAGGTTCGATTCC.......................................................................................................................................................................................... 16 2 20 0.45 9 0 0 8 0 0 0 1 0 0
..........................................................................................GTGAAAGTGATCGTGAT............................................................................................................................................... 17 0 5 0.40 2 0 0 0 1 1 0 0 0 0
................................................TTGTAGGTTCGATTCT.......................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 1 0 0 0 0
.........................................................................................AGTGAAAGTGATCGTGA................................................................................................................................................ 17 0 4 0.25 1 0 0 0 0 0 0 0 1 0
.............................................AAGTTGTAGGTTCGATT............................................................................................................................................................................................ 17 1 4 0.25 1 0 0 1 0 0 0 0 0 0
...............................................GTCGTAGGTTCGATT............................................................................................................................................................................................ 15 1 9 0.22 2 0 0 1 1 0 0 0 0 0
...........................................................................................TGAAAGTGATCGTGA................................................................................................................................................ 15 0 8 0.13 1 0 0 0 1 0 0 0 0 0
.................................................................................................................TGTGTCAAAAAAGTAGTTGAA.................................................................................................................... 21 3 9 0.11 1 0 0 0 0 1 0 0 0 0
..........................................CTGAGGTCGTAGGTTCGAT............................................................................................................................................................................................. 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0
................................................TCGTTGGTTCGATTCTAA........................................................................................................................................................................................ 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0
..................TTTGGTACTTCTAGAGCT...................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1
.............................................................................................................TTAAAGTGTAAAAAAAAA........................................................................................................................... 18 1 15 0.07 1 0 0 0 0 1 0 0 0 0
...............................................GTTGTAGGTTCGATTCC.......................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................CGAAATCTCTGAAAAAAA. 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..............................................GGTTGTAGGTTCGATT............................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................AGGTTGTAGGTTCGATTCC.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTGCCGCCGTCCTCATCGAAACGATGAAGATCACGATTTAGTGAGTTCACCATCCAAGCTAAGATTTAGTTCCTAATTCTAGTTACATTTCACTTTCACTAGCACTACCAATTTCACATTTTTTTTATCAACTTTGATGGCTTTTGATTTGGTGATTTTTCTTTATACAAATATGTATTGTGATTTATTTGCGTCTATGCAAACCACAAAATGCATTACTGAAAGAAATTTGCTTTAGATACTTTTTATC
**************************************************.((.(((.(((.((.((((...)))).)))))))).)).((((..(((..(((...(((((.((.(((.......))).))..))))).)))..)))....)))).........(((((....)))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................TCACTTTCACTAGCACTA............................................................................................................................................... 18 0 2 0.50 1 1 0
.........................................................................................TCACTTTCACTAGCAC................................................................................................................................................. 16 0 5 0.40 2 2 0
...........................................................................................ACTTTCACTAGCACTA............................................................................................................................................... 16 0 5 0.20 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:18257007-18257256 - dsi_17177 AACGGCGGCAGGAGTAGCTTTGCTACTTCTAGTGCTAAA------TCACTCAAG------TGGTAGGTTCGAT-TC-----TAAAT-CAAGGATTA-------AGATC------AATGTA-----AAGTGAAAGTGATCGTGA--------TG---------------------GTTAA-AGTGTAAAAAAAATAGT-TGAAACTACCGAAAACTAAACCACTAAA----AAGA--------------------------------AATATGTTTATACA------------------------------------------------------------------------------TAACACTAAA---------------------------------------TAAACGCAG--------------------------------------------------------------------------------------------------------------------------ATACGTTTGGTG--TTTTACGTAA--TG-AC---TTTCTTT---AAAC---------GAAATC-------TATGAAAAAT----AG
droSec2 scaffold_9:1033668-1033910 - TACGGCGGCAGGAGTAGCTTTGCTACTTCTAGTGCTAAA------TCACTCAAG------TGGTAGGTTCGAT-TC-----TAAAT-CAAGGATTA-------ATATC------AATGTA-----AAGTGAAAGTGATCGTGA--------TG---------------------GTTAA-AGTGA--AAAA-ATAGC-TGAAGCTACCGAAAACTAAACCACTAAA----AAGG--------------------------------AA------TATGTAT----------------------------------------------------------------------------AAAACACTGAA---------------------------------------TAAACGCAG--------------------------------------------------------------------------------------------------------------------------ATACGTTTGGTG--TTTTACGTAA--TG-AC---TTTCCTT---AAAC---------GAAACC-------TATGAAAAAT----AG
dm3 chr2R:17718590-17718845 - TACGTCGGCAGGAGTAGCTTTGCTACTTCTAGTGCTAAA------TCACTCAAG------TGGTAGGTTCGAT-TC-----TAAAT-CAAGGATTAA------AGATC------AACGTA-----AAGTAAAAGTGATTGTGA--------TG---------------------GTTAAGAGTGA--AAAA-ACT---AAAAACTACCGAAAACTAAACCAATAAAAAAAAAGG--------------------------------AA------TATATAT--------------------------------------------------------------------------ATAAAACAGCGAATAA----------------------------------TATAAACGCAG--------------------------------------------------------------------------------------------------------------------------ATACATTTGGTGTTTTCTATGCAA--CG-GC---TTTCTTT---AAAA---------GAAATA-------TATGAAAAAT----AG
droEre2 scaffold_4845:11849900-11850133 - AACGGCGGCAGGAGTAGCTCTGCTACTTCTTGTGCTAAA------TCACTCAAG------TGGTAGGTTCAAG-TG-----TAAAT-CAAGGATTA-------AGATT------ATTGTA-----AAGCGAAAGTGATCTTGA--------TA---------------------GTGAAGAGTGT--GAAA-ACTGCAAGAAATAACCGAAAACTAACT--CAAAA----AAGG--------------------------------AT------TATACAT----------------------------------------------------------------------------AAT----------------------------------------------ACAAAAACAGCTATGC----------------------------------------AA---------------------------------------------------------------------------------TATTA--TTTTACGTAA--TG-AA---TTTCTTT---AAAA---------GAAATT-------TAAAGAA-------AA
droYak3 2R:11469033-11469271 + AACGACGGCAGGAGTAGCTCTGCTACTCCTTGTGCTAAA------TCACTCAAG------TGGTAGGTTCCAG-TC-----GAAAT-CCAGGATTA-------AGATT------AGTGTA-----AAGTGAAAGTGATCGTGA--------TA---------------------AAAAA-ACAGT--GAAA-ATAGCAAGAAGCTATTAAAAACTA--CCACAAAA---AATGG--------------------------------AT------TAAATAT----------------------------------------------------------------------------AAAAGACTAGA---------------------------------------TAGTAGAAA--------------------------------------------------------------------------------------------------------------------------AAATAT----TG--TTTTACGTAA--TG-AA---TTTCTTC---AAAA---------GAAATC-------TTAAAAAAAA----AC
droEug1 scf7180000409672:7545890-7546144 - AACGGCAGCAGGAGTAGCCTTGCTACTTCTAGTTTTAAA------TCACTCAAG------TGGTAGGTGTTTG-TG-----GAGAT-CCAGGATAA-------AGGAT------AATGAAAAGTGAA------GTGAAAGTAAACA---------A-G-------------ACAATGAA-AGTGC--CA----------GAAATTACAA----------------------AAG-GAAATGCCTAAAAATTATGAACTGAAAA---AT-----------------------------------------------------------CAAACCAAAAATAATG--ATTG--------------------------------------------------------------------------------------------------------TTTTAACTTAA---------------------------------------------------------------------------------CAAGC--TGTAAAGGAACTATTCAGGAT---TATAGTGACA----T---TGAATTA-------AGTGAAAAAA----AG
droBia1 scf7180000301754:4818094-4818365 - AACGGCAGCAGGAGTAGCCCTGCTACTTCTAGTGCTGAA------TCAGTCAAG------TGGTAGGTTTTCGAGC-----CAAGT-CAAGGATAA-------AGGAT------AATGAA-----AACTAATAGTGAAAGTTAACTAAAAATCGA----CCCAAATATGAACTC------------------------------------------------AA----AAAAGGT--------------------------------T------CAAATCTGAACAGT-AAA-CGTAAAAGATACTGAGAAACCTAATGAAAACTGCCGAAGTT----------------------------------------------------------------------ATATAAGTTCTTGTATGCGGCTAAAAAAA--------------------------------------------------------------------------------------------------------------------A--TATAAGGAAG--TA-AC---ATTCTC----AACC---------AAAAAT-------TAAGGACA------AT
droTak1 scf7180000415681:290752-291048 - AACGGTAGCAGGAGTAGCCCTGCTACTTCTAGTGCTAAA------CCAGTCAAG------TGGTAGGTTGAAC-A---AGCACCAT-CAAGGATAA-------AGGAT------AATCCA-----AAGTGAAAGTGAAAGTGGACT---------ACC-------------ACC-------------------------------------------------AA---AAAAGTG--------------------------------C------CAAATATGAACAAA-AAACAG---AAGAAGCTAAGAAATTTTAAAGAAACTAACCAAGTT----------------------------------------------------------------------ATATAAAACATCGTGTGCGATCAAAAAAGATAAATTGCACAAAACACAATT-----------------------------------------------GAAACCGAAAT---TGGAAATAAAATAATTAAGTT----------------------------C-AT---TATTTTT---TAAC--------AAACTAT---------TAAATAAT----AT
droEle1 scf7180000491211:62588-62827 - AACGGCTGCAGGAGTAGCCCTGCTACTTCTTGTGATAAA------TCAGTCAAG------TGGTAGGTGTTTG-TC-----TAAAC-CAAGGACGA-------AGGAT------AATCCA-----AAGTTAAAGTGATCGTGA--------TA---------------------GTTCA-AGTGC--GAAA-AATAAAAAAA---------------------------------AAAATGAGTTA-----ACCAACTG-----------------------------------------------------------------CAACAAAGTTACATAAACGAAACTA--------------------------------------------------------------------------------------------------------TTTAAAGTCAA---------------------------------------------------------------------------------TATCA--TATGAAGGAA---T-CCGAAT---TCT---AAGTTACTTAACTGAAAAT-------TAACAAA-------AA
droRho1 scf7180000768041:18767-19039 - AACGGCAGCGGGAGTAGCCTTGCTACTTCTTGTGCTAAA------TCACTCAAG------TGGTAGGTGTTTG-TT-----TAAGCCAAAGGATAA-------AGGAC------AATGCA-----AAGTGAAAGTGATCGTGA--------TA---------------------ATTCA-AGTGC--CA------------------------------------------------------------------ACTAAAACCGGAT------TAA---------------------------------------AAAAAACTTAACAAAGTTACAAAAATAAAACTATAT---AAAATAAAGCAAAAAATCTTACCAAACCAAAAAATTTAAGCAAAATTTTATATAAATTCAACA----------------------------------------------------------------------------------------------------------------------------------------ATACAAAA--TA-AT---ATTTTTT---AAA-------------TCT-------TAAAGAAGGA----AA
droFic1 scf7180000453858:126598-126928 - AACGGCGGCAGGAGTAGCACTGCTACTTCTCGTGTTAAA------TCATTCAAG------TGGTAGGTGTTTTGCC-----TAAAA-AAAGGATAA-------AGGGT------AATCCA-----AAGTGAAAGTGACTAACA--------TTGAA--AAACGAATAAGCAAAA------------------------------------------------AG----AAAAGTA--------------------------------T------AATACGTGAGCAAATAAAAAGTAAAAGA----AAGAAACCT-ATGAAAACTAAAAACGTT----------------------------------------------------------------------ACATAA------------------------------------------------------ATGAAAAAGTGTAAAAAATCATGAGAAAAAAATAAAGAGCGAATGAAAATGACAAAAATCAATTAATTGAACTGATTAATTA-GTT--GTCAAAGTAT--AT-CC---TTTTTCT---AACA---------TAAATC-------TCTGGAAAAATGAAAC
droKik1 scf7180000302366:237486-237765 + CATTGCAGCAGGAGTAGCCTTGCTACTTCTTGTGCTAAG------CCCAGCGAG------TGGTAGGTGTTG---------CCGAT-CAAGGATAA-------AGGAT------AATACC-----AAGTGAAAGTGAAAT--------------------------ATAAACAC------------------------------------------------AA------AACGG--------------------------------T------CATTCTTAAACTGA-AAT-CTTCAAGGATAATCAGAAAAT----------------------AAAAGTGAAAATATAAACTATAAAACAGTAAA---AATTGCT----------------TCAAAAAATTATATAAATCCATTTGTGCAGTTA------------------------------------------------------------------------------------------------------------------------TGG--ATAAACTTCA--AG-CA-----TTTTT---AAAA---------GAACTTACAAATTTCTAAT-ATTTAAAAG
droAna3 scaffold_13266:11095495-11095584 - GACGGCAGCAGGAGTAGCCCTTCTACTTCTAGTGCTAAATACAAATTCCATAAG------TGGTAGGTGCTC---CC----GAGAA-AGAGGATCAAGGATTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396547:1372940-1373001 + GACGGTAACAGGAGTAGCCCTGCTACTTCTAGTGCTTAACACAAATTCCATAAG------TGGTAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:15273203-15273352 - AATCGCTGCAGGAGCAGCCCTGCTGCTTCTTGCACTAAGTGCAAATCAAACCAGTGCCAATGGTAGGTGGGC---CCAAGCCCCTC-AAAGGATAA-------GGGCTAGCCCTAGCCCC-----AAGTGAAAGTGA------AAT---------CACAG-----------ACAGT-----GTGTG--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAAGAGT------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:3778173-3778322 + AATCGCTGCAGGCGCAGCCCTGCTGCTTCTTGCACTAAGTGCAAATCAATCCAGTGCCAATGGTAGGTGGGC---CCAAGCCCCTC-AAAGGATAA-------GGGCTAGCCCTAGCCCC-----AAGTGAAAGTGA------AAT---------CACAG-----------ACAGT-----GTGTG--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAAGAGT------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004514:3004362-3004427 - ATCAACTGTAGGAGTAGCTTGTCTACTTCTGGTCCTCAGTGCCTTCAATCCAAC------TGGTAGGTGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACGGCGGCAGGAGTAGCTTTGCTACTTCTAGTGCTAAA------TCACTCAAG------TGGTAGGTTCGAT-TC-----TAAAT-CAAGGATTA-------AGATC------AATGTA-----AAGTGAAAGTGATCGTGA--------TG---------------------GTTAA-AGTGTAAAAAAAATAGT-TGAAACTACCGAAAACTAAACCACTAAA----AAGA--------------------------------AATATGTTTATACA------------------------------------------------------------------------------TAACACTAAA---------------------------------------TAAACGCAG--------------------------------------------------------------------------------------------------------------------------ATACGTTTGGTG--TTTTACGTAA--TG-AC---TTTCTTT---AAAC---------GAAATC-------TATGAAAAAT----AGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................CTTCTAGTGCTAAA------TCACTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...............AGCTTTGCTACTTCTAGTGCTAAA------TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...............AGCTTTGCTACTTCTAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
................GCTTTGCTACTTCTAGTGCTAAA------TCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...............AGCTTTGCTACTTCTAGTGCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...............................................................................................................................GTGAAAGTGATCGTGA--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1680.75600000010005000000
...............................................................................................................................GTGAAAGTGATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15100.60600000000006000000
...............................................................................................................................GTGAAAGTGATCGTGA--------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1750.40200000001001000000
..............................................................................................................................AGTGAAAGTGATCGTGA--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1740.25100000000100000000
................................................................................................................................TGAAAGTGATCGTGA--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.13100000000001000000
...............................................................................................................................................................................TTAA-AGTGTAAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................18150.07100000001000000000
droSec2
TACGGCGGCAGGAGTAGCTTTGCTACTTCTAGTGCTAAA------TCACTCAAG------TGGTAGGTTCGAT-TC-----TAAAT-CAAGGATTA-------ATATC------AATGTA-----AAGTGAAAGTGATCGTGA--------TG---------------------GTTAA-AGTGA--AAAA-ATAGC-TGAAGCTACCGAAAACTAAACCACTAAA----AAGG--------------------------------AA------TATGTAT----------------------------------------------------------------------------AAAACACTGAA---------------------------------------TAAACGCAG--------------------------------------------------------------------------------------------------------------------------ATACGTTTGGTG--TTTTACGTAA--TG-AC---TTTCCTT---AAAC---------GAAACC-------TATGAAAAAT----AGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............AGCTTTGCTACTTCTAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0022000
........................................................................................................................................ATCGTGA--------TG---------------------GTTAA-AGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..CGGCGGCAGGAGTAGCTTTGCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
dm3
TACGTCGGCAGGAGTAGCTTTGCTACTTCTAGTGCTAAA------TCACTCAAG------TGGTAGGTTCGAT-TC-----TAAAT-CAAGGATTAA------AGATC------AACGTA-----AAGTAAAAGTGATTGTGA--------TG---------------------GTTAAGAGTGA--AAAA-ACT---AAAAACTACCGAAAACTAAACCAATAAAAAAAAAGG--------------------------------AA------TATATAT--------------------------------------------------------------------------ATAAAACAGCGAATAA----------------------------------TATAAACGCAG--------------------------------------------------------------------------------------------------------------------------ATACATTTGGTGTTTTCTATGCAA--CG-GC---TTTCTTT---AAAA---------GAAATA-------TATGAAAAAT----AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............AGCTTTGCTACTTCTAGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGCTTTGCTACTTCTAGTGCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTAGTGCTAAA------TCACTCAAG------TGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCTACTTCTAGTGCTAAA------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGCTTTGCTACTTCTAGTGCTAAA------TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................GTAGGTTCGAT-TC-----TAAAT-CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTTGCTACTTCTAGTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCTTTGCTACTTCTAGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCTTTGCTACTTCTAGTGCTAAA------TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGCTTTGCTACTTCTAGTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCTACTTCTAGTGCTAAA------TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGCTACTTCTAGTGCTAAA------TCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CTTTGCTACTTCTAGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACGGCGGCAGGAGTAGCTCTGCTACTTCTTGTGCTAAA------TCACTCAAG------TGGTAGGTTCAAG-TG-----TAAAT-CAAGGATTA-------AGATT------ATTGTA-----AAGCGAAAGTGATCTTGA--------TA---------------------GTGAAGAGTGT--GAAA-ACTGCAAGAAATAACCGAAAACTAACT--CAAAA----AAGG--------------------------------AT------TATACAT----------------------------------------------------------------------------AAT----------------------------------------------ACAAAAACAGCTATGC----------------------------------------AA---------------------------------------------------------------------------------TATTA--TTTTACGTAA--TG-AA---TTTCTTT---AAAA---------GAAATT-------TAAAGAA-------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............AGCTCTGCTACTTCTTGTGCTAAA------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0033000000
...............AGCTCTGCTACTTCTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0033000000
...............AGCTCTGCTACTTCTTGTGCTAAA------TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0022000000
.................................................................................................................................GAAAGTGATCTTGA--------TA---------------------GTGAAGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................................................................................................................AT----------------------------------------------ACAAAAACAGCTATGC----------------------------------------AA---------------------------------------------------------------------------------TATT...........................................................................2411.0010100000
.............GTAGCTCTGCTACTTCTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.............................................................................................................................................GA--------TA---------------------GTGAAGAGTGT--GAAA-AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
...............AGCTCTGCTACTTCTTGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
....................................................................TCAAG-TG-----TAAAT-CAAGGATTA-------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
................GCTCTGCTACTTCTTGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
.....................................................................................................................................GTGATCTTGA--------TA---------------------GTGAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.........................CTTCTTGTGCTAAA------TCACTCAAG------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.......................................................................................................................A-----AAGCGAAAGTGATCTTGA--------TA---------------------GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
droYak3
AACGACGGCAGGAGTAGCTCTGCTACTCCTTGTGCTAAA------TCACTCAAG------TGGTAGGTTCCAG-TC-----GAAAT-CCAGGATTA-------AGATT------AGTGTA-----AAGTGAAAGTGATCGTGA--------TA---------------------AAAAA-ACAGT--GAAA-ATAGCAAGAAGCTATTAAAAACTA--CCACAAAA---AATGG--------------------------------AT------TAAATAT----------------------------------------------------------------------------AAAAGACTAGA---------------------------------------TAGTAGAAA--------------------------------------------------------------------------------------------------------------------------AAATAT----TG--TTTTACGTAA--TG-AA---TTTCTTC---AAAA---------GAAATC-------TTAAAAAAAA----ACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............AGCTCTGCTACTCCTTGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21112.0012010200000000
...............AGCTCTGCTACTCCTTGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20111.001104700000000
...............AGCTCTGCTACTCCTTGTGCTAAA------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.00804400000000
...............AGCTCTGCTACTCCTTGTGCTAAA------TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2718.00807100000000
...............AGCTCTGCTACTCCTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.00808000000000
...............AGCTCTGCTACTCCTTGTGCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2318.00807100000000
...............AGCTCTGCTACTCCTTGTGCTAAA------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.00606000000000
...............AGCTCTGCTACTCCTTGTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.00505000000000
................GCTCTGCTACTCCTTGTGCTAAA------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.00303000000000
...............AGCTCTGCTACTCCTTGTGCTAAA------TCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2913.00302100000000
................GCTCTGCTACTCCTTGTGCTAAA------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00302100000000
.......................TACTCCTTGTGCTAAA------TCACTCAAG------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.................CTCTGCTACTCCTTGTGCTAAA------T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...............................GTGCTAAA------TCACTCAAG------TGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............TAGCTCTGCTACTCCTTGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................TA-------AGATT------AGTGTA-----AAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................GCTCTGCTACTCCTTGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
..............TAGCTCTGCTACTCCTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.............GTAGCTCTGCTACTCCTTGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..................................................................................................................AGTGTA-----AAGTGAAAGTGATCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................GTA-----AAGTGAAAGTGATCGTGA--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............GTAGCTCTGCTACTCCTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............................TGTGCTAAA------TCACTCAAG------TGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............GTAGCTCTGCTACTCCTTGTGCTAAA------TC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.........................................................................................................ATT------AGTGTA-----AAGTGAAAGTGATCGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.................CTCTGCTACTCCTTGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
................GCTCTGCTACTCCTTGTGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.............GTAGCTCTGCTACTCCTTGTGCTAAA------TCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
droEug1
AACGGCAGCAGGAGTAGCCTTGCTACTTCTAGTTTTAAA------TCACTCAAG------TGGTAGGTGTTTG-TG-----GAGAT-CCAGGATAA-------AGGAT------AATGAAAAGTGAA------GTGAAAGTAAACA---------A-G-------------ACAATGAA-AGTGC--CA----------GAAATTACAA----------------------AAG-GAAATGCCTAAAAATTATGAACTGAAAA---AT-----------------------------------------------------------CAAACCAAAAATAATG--ATTG--------------------------------------------------------------------------------------------------------TTTTAACTTAA---------------------------------------------------------------------------------CAAGC--TGTAAAGGAACTATTCAGGAT---TATAGTGACA----T---TGAATTA-------AGTGAAAAAA----AGSizeHit CountTotal NormTotal
No Reads
droBia1
AACGGCAGCAGGAGTAGCCCTGCTACTTCTAGTGCTGAA------TCAGTCAAG------TGGTAGGTTTTCGAGC-----CAAGT-CAAGGATAA-------AGGAT------AATGAA-----AACTAATAGTGAAAGTTAACTAAAAATCGA----CCCAAATATGAACTC------------------------------------------------AA----AAAAGGT--------------------------------T------CAAATCTGAACAGT-AAA-CGTAAAAGATACTGAGAAACCTAATGAAAACTGCCGAAGTT----------------------------------------------------------------------ATATAAGTTCTTGTATGCGGCTAAAAAAA--------------------------------------------------------------------------------------------------------------------A--TATAAGGAAG--TA-AC---ATTCTC----AACC---------AAAAAT-------TAAGGACA------ATSizeHit CountTotal NormTotal
No Reads
droTak1
AACGGTAGCAGGAGTAGCCCTGCTACTTCTAGTGCTAAA------CCAGTCAAG------TGGTAGGTTGAAC-A---AGCACCAT-CAAGGATAA-------AGGAT------AATCCA-----AAGTGAAAGTGAAAGTGGACT---------ACC-------------ACC-------------------------------------------------AA---AAAAGTG--------------------------------C------CAAATATGAACAAA-AAACAG---AAGAAGCTAAGAAATTTTAAAGAAACTAACCAAGTT----------------------------------------------------------------------ATATAAAACATCGTGTGCGATCAAAAAAGATAAATTGCACAAAACACAATT-----------------------------------------------GAAACCGAAAT---TGGAAATAAAATAATTAAGTT----------------------------C-AT---TATTTTT---TAAC--------AAACTAT---------TAAATAAT----ATSizeHit CountTotal NormTotal
No Reads
droEle1
AACGGCTGCAGGAGTAGCCCTGCTACTTCTTGTGATAAA------TCAGTCAAG------TGGTAGGTGTTTG-TC-----TAAAC-CAAGGACGA-------AGGAT------AATCCA-----AAGTTAAAGTGATCGTGA--------TA---------------------GTTCA-AGTGC--GAAA-AATAAAAAAA---------------------------------AAAATGAGTTA-----ACCAACTG-----------------------------------------------------------------CAACAAAGTTACATAAACGAAACTA--------------------------------------------------------------------------------------------------------TTTAAAGTCAA---------------------------------------------------------------------------------TATCA--TATGAAGGAA---T-CCGAAT---TCT---AAGTTACTTAACTGAAAAT-------TAACAAA-------AASizeHit CountTotal NormTotal
No Reads
droRho1
AACGGCAGCGGGAGTAGCCTTGCTACTTCTTGTGCTAAA------TCACTCAAG------TGGTAGGTGTTTG-TT-----TAAGCCAAAGGATAA-------AGGAC------AATGCA-----AAGTGAAAGTGATCGTGA--------TA---------------------ATTCA-AGTGC--CA------------------------------------------------------------------ACTAAAACCGGAT------TAA---------------------------------------AAAAAACTTAACAAAGTTACAAAAATAAAACTATAT---AAAATAAAGCAAAAAATCTTACCAAACCAAAAAATTTAAGCAAAATTTTATATAAATTCAACA----------------------------------------------------------------------------------------------------------------------------------------ATACAAAA--TA-AT---ATTTTTT---AAA-------------TCT-------TAAAGAAGGA----AASizeHit CountTotal NormTotal
No Reads
droFic1
AACGGCGGCAGGAGTAGCACTGCTACTTCTCGTGTTAAA------TCATTCAAG------TGGTAGGTGTTTTGCC-----TAAAA-AAAGGATAA-------AGGGT------AATCCA-----AAGTGAAAGTGACTAACA--------TTGAA--AAACGAATAAGCAAAA------------------------------------------------AG----AAAAGTA--------------------------------T------AATACGTGAGCAAATAAAAAGTAAAAGA----AAGAAACCT-ATGAAAACTAAAAACGTT----------------------------------------------------------------------ACATAA------------------------------------------------------ATGAAAAAGTGTAAAAAATCATGAGAAAAAAATAAAGAGCGAATGAAAATGACAAAAATCAATTAATTGAACTGATTAATTA-GTT--GTCAAAGTAT--AT-CC---TTTTTCT---AACA---------TAAATC-------TCTGGAAAAATGAAACSizeHit CountTotal NormTotal
No Reads
droKik1
CATTGCAGCAGGAGTAGCCTTGCTACTTCTTGTGCTAAG------CCCAGCGAG------TGGTAGGTGTTG---------CCGAT-CAAGGATAA-------AGGAT------AATACC-----AAGTGAAAGTGAAAT--------------------------ATAAACAC------------------------------------------------AA------AACGG--------------------------------T------CATTCTTAAACTGA-AAT-CTTCAAGGATAATCAGAAAAT----------------------AAAAGTGAAAATATAAACTATAAAACAGTAAA---AATTGCT----------------TCAAAAAATTATATAAATCCATTTGTGCAGTTA------------------------------------------------------------------------------------------------------------------------TGG--ATAAACTTCA--AG-CA-----TTTTT---AAAA---------GAACTTACAAATTTCTAAT-ATTTAAAAGSizeHit CountTotal NormTotal
No Reads
droAna3
GACGGCAGCAGGAGTAGCCCTTCTACTTCTAGTGCTAAATACAAATTCCATAAG------TGGTAGGTGCTC---CC----GAGAA-AGAGGATCAAGGATTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............GTAGCCCTTCTACTTCTAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
..........................TTCTAGTGCTAAATACAAATTCCATAAG------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.............GTAGCCCTTCTACTTCTAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................CTC---CC----GAGAA-AGAGGATCAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
.............GTAGCCCTTCTACTTCTAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......................................ATACAAATTCCATAAG------TGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201010000
droBip1
GACGGTAACAGGAGTAGCCCTGCTACTTCTAGTGCTTAACACAAATTCCATAAG------TGGTAGGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AATCGCTGCAGGAGCAGCCCTGCTGCTTCTTGCACTAAGTGCAAATCAAACCAGTGCCAATGGTAGGTGGGC---CCAAGCCCCTC-AAAGGATAA-------GGGCTAGCCCTAGCCCC-----AAGTGAAAGTGA------AAT---------CACAG-----------ACAGT-----GTGTG--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAAGAGT------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................AAATCAAACCAGTGCCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020110000000
................................CACTAAGTGCAAATCAAACCAGTGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.............GCAGCCCTGCTGCTTCTTGCACTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
AATCGCTGCAGGAGCAGCCCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...............AGCCCTGCTGCTTCTTGCACTAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.................................ACTAAGTGCAAATCAAACCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................TAAGTGCAAATCAAACCAGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................CTGCTGCTTCTTGCACTAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................................CCTAGCCCC-----AAGTGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
...............AGCCCTGCTGCTTCTTGCACTAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...............AGCCCTGCTGCTTCTTGCACTAAGTGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
droPer2
AATCGCTGCAGGCGCAGCCCTGCTGCTTCTTGCACTAAGTGCAAATCAATCCAGTGCCAATGGTAGGTGGGC---CCAAGCCCCTC-AAAGGATAA-------GGGCTAGCCCTAGCCCC-----AAGTGAAAGTGA------AAT---------CACAG-----------ACAGT-----GTGTG--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAAGAGT------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATCAACTGTAGGAGTAGCTTGTCTACTTCTGGTCCTCAGTGCCTTCAATCCAAC------TGGTAGGTGTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............AGCTTGTCTACTTCTGGTCCTCAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27113.001307060
...............AGCTTGTCTACTTCTGGTCCTCAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00402110
...............AGCTTGTCTACTTCTGGTCCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00202000
...............AGCTTGTCTACTTCTGGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201010
...AACTGTAGGAGTAGCTTGTCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200110
......................CTACTTCTGGTCCTCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................ACTTCTGGTCCTCAGTGCCTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.................CTTGTCTACTTCTGGTCCTCAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
................GCTTGTCTACTTCTGGTCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................GCTTGTCTACTTCTGGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.................CTTGTCTACTTCTGGTCCTCAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.................CTTGTCTACTTCTGGTCCTCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...............AGCTTGTCTACTTCTGGTCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
....................GTCTACTTCTGGTCCTCAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............AGCTTGTCTACTTCTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...............AGCTTGTCTACTTCTGGTCCTCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
....................................CAGTGCCTTCAATCCAAC------T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010

Generated: 05/19/2015 at 02:22 AM