ID:

dsi_1711

Coordinate:

3l:8194297-8194446 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-31.1	-30.9	-30.9	-30.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TACATTTGCTGCAATCAATGGGGATGTACATATGGCGGCGACTGATAAATGTGAGTGTGTGAACATGAGAGTGGCCCAAATCTGGGATGAATCCTTGCCCAGGCTGTTCGGAAAAGTTCGCCATTTGCGCGCGAGTGTGTGTATCCGTGTGCGTCCCTGTTTTGTATCTGTGTATCTGTAAGCTTTGTATCCGTATCTGTAGGCAGTGTGCTCGACGAAAAACGATTGCAATTTTACGCTGACGCTGCAG ************************************************............(((.((................(((((((..(((((....((....(((((.((..((((((.(((((((....)))))))...))).)))...)).))))).....))......)))))..)).)))))...)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
.................................................................................CTGGGATGAATCCTT..........................................................................................................................................................	15	0	1	1.00	1	1	0	0	0	0
..........................................TGGTAAATGTGAGTGTGAGAAT..........................................................................................................................................................................................	22	3	4	0.50	2	0	2	0	0	0
.................................................................................CTGGGATGAATCCTTT.........................................................................................................................................................	16	1	2	0.50	1	1	0	0	0	0
............................................................................................................................................................................................................AGTGTGCTCGACGAA...............................	15	0	2	0.50	1	0	0	1	0	0
...............................................................................CGCTGGGATGAATCCT...........................................................................................................................................................	16	2	20	0.35	7	3	4	0	0	0
...................................................................................................CAGGCGGTTCGGAAA........................................................................................................................................	15	1	18	0.22	4	0	0	0	3	1
...............................................................................CGCTGGGATGAATCCTT..........................................................................................................................................................	17	2	18	0.11	2	0	1	0	0	1
.............................................................................................CGTGCGCAGGCGGTTCGGA..........................................................................................................................................	19	3	18	0.06	1	0	1	0	0	0
...........................................................................................................................................................................................TAGCCGTATCGGTAGG...............................................	16	2	18	0.06	1	0	0	0	1	0
............................................................................................................................................................................TTCCTGTAAGCTTTGTATAC..........................................................	20	3	19	0.05	1	0	0	0	1	0
..............................................................................................GTGCGCAGGCGGTTCGGAA.........................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0

Anti-sense strand reads

ATGTAAACGACGTTAGTTACCCCTACATGTATACCGCCGCTGACTATTTACACTCACACACTTGTACTCTCACCGGGTTTAGACCCTACTTAGGAACGGGTCCGACAAGCCTTTTCAAGCGGTAAACGCGCGCTCACACACATAGGCACACGCAGGGACAAAACATAGACACATAGACATTCGAAACATAGGCATAGACATCCGTCACACGAGCTGCTTTTTGCTAACGTTAAAATGCGACTGCGACGTC ************************************************............(((.((................(((((((..(((((....((....(((((.((..((((((.(((((((....)))))))...))).)))...)).))))).....))......)))))..)).)))))...)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	M024 male body	SRR618934 dsim w501 ovaries	M023 head
.......................................................ACACACTTGTAGTCTCA..................................................................................................................................................................................	17	1	1	1.00	1	1	0	0	0	0
.............................................ATTTACACTCTGACACTTATAC.......................................................................................................................................................................................	22	3	2	0.50	1	0	1	0	0	0
........................................................................................................................................................CAGGTACAAAACAAAGAC................................................................................	18	2	16	0.13	2	0	0	2	0	0
...............................TACCGCCGCTGACTG............................................................................................................................................................................................................	15	1	11	0.09	1	0	0	0	1	0
..................................................................................................................................................................................................................CAGCTGCTTTTGGCTAACTT....................	20	3	14	0.07	1	0	0	0	0	1

Generated: 04/24/2015 at 10:44 AM