ID:

dsi_17093

 Coordinate:

2l:20501695-20501931 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.7 -32.7 -32.7

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_17093  2l:20501846-20501870 -
  2. dsi_24573  node_47939:379-403 +
  3. node_38009:256-280 +
star

Sense Strand Reads

GGAGGTTATGCCCCCCAGTCATCCGCCTACGAGCTATGAGTACAGGAAACGTAAGTATTTGGTAGTGCCGGGGTCCATTACATAAGATTGTTTTATGGGATGGGATATAGATTTAGATACGATTATTATCGAGTATTAACTGATAACAGTGAATGAGCAAGATCTCAGATCAAACTATATAAAACACTAGAATGACTAATATTATAATATTATACAACGATTAACTTCTTTATAGTAATTACATACACGCATAAATTACTACTAATAATAATCAACCAATTTTATAGCACTTCCATTAATAATACCGGAAAACGCAGTGGCATATAAACGTCCATAT
**************************************************(((((...(((((((((......(((((..(((((((...)))))))..)))))((((((.........((((....))))........(((....)))(((.((((......))))..)))..))))))....)))))...((..((((((....))))))..))..(((((......(((((((((((.............)))))))).)))...)))))..)))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
.........................................ACAGGAAACGTAAGTATTTGGTAG................................................................................................................................................................................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................TTTAGATACGATTATTATCGAGTAT......................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................TTGCATCAATAATACCGGATA.......................... 21 3 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................................................................AGTGAGCAAGGTCTCAGGTC...................................................................................................................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0
......................................................................................AATGTTTTATGGGAT............................................................................................................................................................................................................................................ 15 1 20 0.15 3 0 0 0 3 0 0 0
...............................................................................................................................................................................................................................................................................................................ACCGCATAACGCAGTGG................. 17 2 11 0.09 1 0 0 0 0 1 0 0
..........................................................TTGGTAATGACGAGGTCCA.................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................ATTAATACTACCGGATA.......................... 17 2 16 0.06 1 0 1 0 0 0 0 0
...................................................................................................................................AGTATTAATTGATAACTG............................................................................................................................................................................................ 18 2 17 0.06 1 0 0 0 0 0 0 1
..........................................................TTGGTAATGCCGGGGACT..................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0
................................................................................CATTAGAGTCTTTTATGGG.............................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0
................................................................................CACTAGATTCTTTTATGGG.............................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0
..............................................AAACGTTCGTATTTGG................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

CCTCCAATACGGGGGGTCAGTAGGCGGATGCTCGATACTCATGTCCTTTGCATTCATAAACCATCACGGCCCCAGGTAATGTATTCTAACAAAATACCCTACCCTATATCTAAATCTATGCTAATAATAGCTCATAATTGACTATTGTCACTTACTCGTTCTAGAGTCTAGTTTGATATATTTTGTGATCTTACTGATTATAATATTATAATATGTTGCTAATTGAAGAAATATCATTAATGTATGTGCGTATTTAATGATGATTATTATTAGTTGGTTAAAATATCGTGAAGGTAATTATTATGGCCTTTTGCGTCACCGTATATTTGCAGGTATA
**************************************************(((((...(((((((((......(((((..(((((((...)))))))..)))))((((((.........((((....))))........(((....)))(((.((((......))))..)))..))))))....)))))...((..((((((....))))))..))..(((((......(((((((((((.............)))))))).)))...)))))..)))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................AGAGTCTAGTTTGATATATTATGTGAT.................................................................................................................................................... 27 1 3 3.00 9 7 2 0 0 0 0 0 0
.............................GCTCGATAATCATGGCC................................................................................................................................................................................................................................................................................................... 17 2 6 1.00 6 0 1 4 1 0 0 0 0
.........................................................................AGGTAATGTATTCTAACAAAATACCCT............................................................................................................................................................................................................................................. 27 0 3 0.67 2 2 0 0 0 0 0 0 0
.....................................................................................................................ATGCTAATAATAGCTCATAATTGACT.................................................................................................................................................................................................. 26 0 3 0.67 2 0 2 0 0 0 0 0 0
........................CGGATGCTCGATACTCATGTCCTT................................................................................................................................................................................................................................................................................................. 24 0 3 0.67 2 0 0 0 0 2 0 0 0
.........................................................................................................................................................................................................................................................................................................TTATTAAGGCCTATTGCG...................... 18 2 5 0.60 3 0 0 1 2 0 0 0 0
...................................................................................................................................................................................................GATTATAATATTATAATATGTCAGT..................................................................................................................... 25 3 2 0.50 1 0 1 0 0 0 0 0 0
....................TTGGCGGATGCTCGA.............................................................................................................................................................................................................................................................................................................. 15 1 13 0.38 5 2 0 3 0 0 0 0 0
.................................................................................................................................................................AAGAGTCTAGTTTGATATATTATGTGATCT.................................................................................................................................................. 30 2 3 0.33 1 0 1 0 0 0 0 0 0
......................GGCGGATGCTCGAGA............................................................................................................................................................................................................................................................................................................ 15 1 9 0.33 3 0 0 2 1 0 0 0 0
..............................................TTTGCATTCATAAACCATCACGGCCC......................................................................................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0
.....................AGGCGGATGCTCGATACTCATGTCCTTT................................................................................................................................................................................................................................................................................................ 28 0 3 0.33 1 0 1 0 0 0 0 0 0
...................................................................GGCCCCAGGTAATGTATTCTAACAAAAT.................................................................................................................................................................................................................................................. 28 0 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................................ATGCTAATAATAGCTCATAATTGACTA................................................................................................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0 0 0 0
.CACCAATACGGGGGGTCAGTAGGCGGA..................................................................................................................................................................................................................................................................................................................... 27 1 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................GTTCTAGAGTCTAGTTTGATAT.............................................................................................................................................................. 22 0 3 0.33 1 0 1 0 0 0 0 0 0
.....................AGGCGGATGCTCGATACTCATGTCCTT................................................................................................................................................................................................................................................................................................. 27 0 3 0.33 1 0 1 0 0 0 0 0 0
.........................................................AAACCATCACGGCCCCAGGTAATGT............................................................................................................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0
..............................CTCGATAATCATGTC.................................................................................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TATTAAGGCCTATTGCG...................... 17 2 9 0.22 2 1 0 1 0 0 0 0 0
....................TAGGCTGATGCTCGAAA............................................................................................................................................................................................................................................................................................................ 17 2 5 0.20 1 0 0 0 1 0 0 0 0
.............................GCTCGTTAATCATGTCC................................................................................................................................................................................................................................................................................................... 17 2 15 0.20 3 0 0 0 3 0 0 0 0
............GGGGTCAGTAGCCGG...................................................................................................................................................................................................................................................................................................................... 15 1 11 0.18 2 1 0 1 0 0 0 0 0
.............................GCTCGATAATCATGGCCAT................................................................................................................................................................................................................................................................................................. 19 3 11 0.18 2 1 0 0 1 0 0 0 0
............................TGCTCGTTAATCATGTCC................................................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0
....................TTGGCGGATGCTCGAGA............................................................................................................................................................................................................................................................................................................ 17 2 14 0.14 2 2 0 0 0 0 0 0 0
.............................GCTCGATAATCATTGCCTTT................................................................................................................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTATTAGGGCCTTTTG........................ 16 1 7 0.14 1 0 0 1 0 0 0 0 0
.............................GCTCGTTAATCATGTCCATT................................................................................................................................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 1 0 0 0 0
.............................GCTCGATAATCATGGCCA.................................................................................................................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 1 0 0 0 1 0
.............................GCTCGATAATCATGGC.................................................................................................................................................................................................................................................................................................... 16 2 11 0.09 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TATTAAGGCCTGTTGCG...................... 17 2 12 0.08 1 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................TTAAGGCCTTTTGCG...................... 15 1 15 0.07 1 0 0 1 0 0 0 0 0
..............GGTCAGTCGGCGGAAGC.................................................................................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TTATTAAGGCCTATTGCGA..................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
.............CGGTTAGTAGGTGGATGCT................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20501645-20501981 - dsi_17093 GGAGGT---------------------------TATGCCCCCCAGTCAT---CCGCCTACGAGCTATGAGTACAGGAAACGTAAGTA---------------------------------------------------------------------------TTTG--GTAGTGCCG-GGGTCCA-----------TTACATAAGATT-G------------------------------------------T----------------TTTATGGG----ATG------------------------GG-------------ATATAGAT-----TTAGATACGAT----------------------T------ATTATCGAGTATTA--ACTGATAACAGTG---------------AATG----AG-CAAGA--------TCTCAGATCA-AA--------CTAT---ATAAAACACTAGA-----------ATGACTAATATT--A--TAATATTAT-A---CAA-CGATTAAC--TTCTT--TATAGTAATT------A--------------------------CATACACGCA---TAAATTACT-ACTAATAATAATCAA--C----CA-ATTTTATAGCACTTCCATTAATAATACCGGAAAACGCAGTGGCATATAAACGTCCATAT
droSec2 scaffold_18:779753-780114 - GGAGGTGGTCTATGA---------------TCTTATGCCCCCCAGTCAT---CCGCCTACGAGCTATGAGTACAGGAAACGTAAGTA---------------------------------------------------------------------------TTTG--GTAGTGCCG-GGGTCCA-----------TTACATAAGATT-G------------------------------------------T----------------TTTATGGG----ATGCATCTTTGACGGGAA--CTT---GGG-------------AT-----------TTAGATACGAT----------------------T------ATTATCGAGTATTA--ACTGACAACAGTG---------------AATG----AT-CAAGA--------TCTCAGATCA-AA--------CTAT---ATAATACACTACA-----------ATGACTAATATT--A--TAATATTAT-A---CAA-CGATTAAC--TTCTT--TATAGTAATT------A--------------------------CATACACGCA---TAAATTACT-ACTAATAATAATCAA--C----CA-ATTTTATAGCATTTCCATTAAAAATACCGGAAAACGCAGTGGCATATAAACGTCCATAT
dm3 chr2R:18297476-18297886 - GGAGGTGGCCTATGAGTATGAACA------TCGTATGCCCCCCAAGCGT---CCGCCTACGGGCTATGAGTACAGCAAACGTAAGTTAAT---CCC-AAGCATGCAT-------------------TCTT---TA------------T--------------TTGG--GTAGTGCCG-GGGTCTA-----------TGACATAAGATC-GATTTTTCCCC-TGA-------ATGCA---------CC---AGT----------------TTTTTGGG----ATGCACCTTTGACAGGAA-CTTT---GGG-------------TTATAGA-T-----TAGATTAGAT---CA-----------------T------ACTATC-------AAAACCAATAACTGTG---------------ATTG----AG-CAAGC--------TCTCAGATCA-AA--------CTAT---ATAATACACTGGA-----------ATGATTAATATT--A----------T-G---CAA-CGATTCAC--TCCTT--TATAGTAATT------A--------------------------CATACACGCA---TAAAATACT-ACAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATAT
droEre2 scaffold_4845:12437910-12438277 - GGAGGTGGCCTATGAGTATGAACA------TCGTATGCCCCCCAAGCGT---CCTACCACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCAT-------------------TCTT---AT---------------TTTC--------TTTC--TTAGTGGCG-GGGTCTA-----------TTCCA---------------------------------------CTCCGCC---AGT----------------TGTATGGG----ATGAACCTTTGATTAGAAT-CTT---GGG-------------TG------------T---CA---G-------------------------------TATC-------AAAACAAATAACAATG---------------AATG----AG-CAAGA--------TCTCGAATCA-AA--------CTAT---ATAAT-CTCTGGA-----------ATGATTAATA-----------------------ATCGAACCAC--TTCC---TATAGTAATT------A--------------------------CACACACGCA---TAAACTACT-ACAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATAT
droYak3 2R:18047215-18047601 - GGAGGTGGCCTATGAGTATGAACA------TCGTATGCCTCCCAAGCGT---CCCACTACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCAT-------------------TCTT---AA------------TTT-----------GTTTC--TTAGTGCCG-GGGCCTA-----------TTACA---------------------------------------CTCCCCC---ATT----------------TTGAGGGG----ATGCACCTTTGATTTGAAT-CTT---GGG-------------TCACAGA-----A-TAGATTATAG-------------------------------TATC-------AAAACCGATAACAGTG---------------AATG----AG-CAAGA--------TCTTGAAACA-AA--------CTAT---ATAACACTCTGGA-----------ATGATTAATATT--A----------A-A---GAA-CAAACCAC--TTCC---TATAGTAATT------A--------------------------CATACACGCA---TAAACTACT-ACAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATAT
droEug1 scf7180000409672:6211122-6211521 - GGAGGTGGCCTACGAGTATGAGCA------CCGTATGCCTCCCAAGCGC---CCACCCACAGGCTATGAGTACAGCAAACGTAAGTTGAG---ACCAATGCATACTT----------------------AACTGC------------TCCTTTCAGCCGTAG----------TGTCG-ATA--TATTACACAATCATTAGATAAGATT-GCTTAC----------------ACAAA----CAATCCC---AGT----------------TTTATGGG----ATGCACTTTGGATGGGGTTCCTT---GGG--------------T------------TAGATTGTAG-------------------------------TATC-------AATACCAATACAAGTG---------------AATG----AA-CAAAAA-----ATTCTCAATGCAAAA--------CTGC---ATAATATTCT-------------------TAATTTT--A----------A-A---TAA-CAAAAAAA--GTCT------------T------A--------------------------TATACTCGCA---TAACATAATAAAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATATCTACAAACGGAGCGGCATATAAACGTCCATAT
droBia1 scf7180000302143:2402514-2402944 + GGAGGTGGCCTACGAGTATGAGCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGTG---CAA-ATGCATGCTA----------------------TTCTAT------------CCCTTTCAGCCGTAGATTC--GTAGAACCG-GGGTCTA-----------TTAGATAAAAGC-GCTTTCTACCT-TCC-------G-----------TCCC---CGT----------------TTTGTGGACCGTTTGCACCTTTGATGGGGCTCCTT---GGG--------------T------------TATATTGTAGTAGCAG-------------------------AACC-------AGTACCAATACCAATA------------ATCAATG----AA-CAATAA-----CTTCTCAATGCAAAA--------CTAT---ATAATACTCTGGA-----------ATGATTAAATTT--A----------C-A---TAA-CGAACAAC--TTTTTTATATAGTAATG------A--------------------------TATACACGCA---TAACATACT-AAAAGTAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATAT
droTak1 scf7180000415739:163521-163968 - GGAGGTGGCCTACGAATACGAGCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGTTT----------------------TTCTGT------------TCCTTTCAGCCGTAGATTC--GTAGTGCCG-GGGTCTA-----------TTAGATAAGATC-GCTTTCCGCCT-TCC-------AAGCA----CTGTCCC---AAT----------------TAAAGGGG----TTGCACTTTGGATGGGGCTCCTT---GGG--------------T------------TAGATTGTAGTATCAGTATCAGTACCTGTTCC-------GATACC-------AGTACCAAAACCAGTG---------------AATG----AA-CAATAA-----CTTCTCAATGCAA-A--------ATAT---ATAATACTCTGGA-----------ATGATTAATTTT--A----------A-A---TAA-CAAAAAAC--TTTTTTATATTGTAATG------A--------------------------TATATGCGCA---TAACATACT-AAAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATAT
droEle1 scf7180000490713:154032-154463 + GGAGGTGGCCTACGAGTATGAGCA------CCGTATGCCCCCCAAGCGT---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-TTGCATGCCT----------------------TTCTAA------------TTCTTTCAGCCGTAGATTC--GTAGAGCCG-GGGTCTA-----------TTATATAAAATC-GACTCTTACCT-TCC-------ACGCA----CTCCCCA---AGT----------------CTTGTGGG----TTGCACTTTGGTTGGGATTCCTT---GGG--------------C------------AAGCTTGTAG----AG-------------------------TATC-------ATTACCAATACCAATA---------------AATG----AA-CAAGAA-----CTTATTAATGCAAAA--------GTAT---GTAATACTTTGTA-----------ATGATTTATTTA--A----------A-A---TAA-CAAACAAC--TTTTTTATATAGTAATGATT------------------------------GATACACGCAACGTAACTTACT-AAAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTCCATAT
droRho1 scf7180000780011:13517-13939 - GGAGGTGGCCTACGAGTATGAACA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGATT----------------------TTCTAA------------TTCTTTCAGCCGTAGATTC--GTAGTGCCG-GGGTCTA-----------CTAGATAAGATT-TCCCTTTGCCT-TCC-------ACGCA----CTCCCCA---ATA----------------TTTTTGAG----TTGCACTTTGGATGGGGCTCCTT---GGG--------------T------------CATATTGGAG-------------------------------TATC-------AGTACCAATACCAGTG---------------AATG----AA-CAAGAA-----CTTCTCAATGCAAAA--------ATAT---ATAATACTCTTGA-----------ATGATTAATTTT--A----------A-A---TAA-CGAAATAC--TTTTTTATATAGTAATA----------------------------------ATACACGCA---TAACTTACT-AAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTCCATAT
droFic1 scf7180000454066:2214834-2215268 - GGAGGTGGCCTACGAATACGAGCA------CCGTATGCCCCCCAAGCGT---CCACCTACGGGCTATGAGTACAGCAAACGTAAGTTGGGTCGCTC-ATGCATGCTC----------------------TTCTAT------------CCCTCTCAGCTGTAGATTC--GTAGTGCCG-GGGTCTA-----------GTAGTTAAGATC-GCCT-CTGCCT-TCC-------ACGCA----CCATTCC---AAT----------------TCTATGGA----TTGCACTTTGGCTGGGGTACCTC---GGG--------------T------------TAAACTGTAG-------------------------------TATCA------AGTACCAGTAACAGTG---------------AATG----AA-CAAGAA-----CTTCTCAATGCAA-AAAAAAAAAGAAT---ATAATACTCTGGA-----------ATGATTAATTTT--A----------A-A---TAA-CGCAAAAACCTTTTCTATATAGTAACG----------------------------------ATACACGCA---TAAACTACT-AAAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATAT
droKik1 scf7180000302476:1750380-1750830 + GGAGGCGGCCTACGAATACGAGCA------CCGTTTGCCCCCCAAGCGC---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGCA-TGACC-AAGCATGATT----------------------TTTTGCCCTCTAGCTACATTTTTTCAGCCTTAGATCTACATATATAATTATATCTA-----------TTAGA-----TC-CCTTCT----T-TCCATCCTCATTGCATTCAC--T-CCATTTA-----------------TTTATGGGGCA-CAGCACTTTGAATGGGTTTCCTT---GGG--------------A------------TAGATTGTAG-------------------------------CAAC----------A-CAGAACCAGTG---------------AATG----AA-CGAGAAAT--GCTTCTCAATGCAA-A--------TAAC---ATAATTTACTAGA-----------AAAATT----TTCAAAATA------A-A---CT--AAAATA-----TCTTTAT-TC-TAATGATCGATAA----------ACTT-----TT--T-TAAAT---AA---TAACTGACT-AAAAATAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATATCAGCAAACGCAGCGGCATATAAACGACCATAT
droAna3 scaffold_13266:7457181-7457638 + dan_1865 GGAGGTGGTTTACGAATACGAGCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCAT-------------------TCTTTCCGA------------TCTTTTCATCCTTAGAGAA--TTAATGCTG-GGATCCG-----------TTAGATTGGATCCGCCTGCAGCCT-CCA-------GTTCA----CCTTTTA---CAT----------------TTTGCGGG----TTGCACTTTTGATGGGCTTCCTTTTGGGG--------------G------------TAGACAGTAT-------------------------------TG--------------TAGAACCAGTGAATGAAACAAAAACAAAAGAAAAAACCA-AAA-----AATCTTCATGCAA----------TAAT---ATAATACTTTGGA-----------ATGAATAATTTT--A----------A-A---TAA-TAACCA-----TTTGTATATT-TAATGATC--TAA----------ACCA-----TTCTTAATTATACACA---TAACCAGTT-TAAAGTAATAATGAAAATCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTCCGTAT
droBip1 scf7180000396384:270691-271139 + GGAGGTGGTTTACGAATACGAGCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCAT-------------------TCTTTCCGA------------TCCTTTCATCCTTAGAGAA--TTAATGCTG-GGATCCG-----------TTAGATTGGATTCGCTTGCAGCCT-CCA-------ATTCA----CCTTTTA---GAT----------------ATTGCGGG----TTGCACTTTTGATGGGCTTCCTT-TGGGG--------------G------------TAGACAGTAG--------------------------------------------------AAACAGTGAATGAAACAAAAACAAA-------AACAAAAAATAAGTTGCAATATGCA--A--------TAAT---ATAATACTCTGGA-----------ATGACTAATTTT--A----------A-A---TAA-TAACCA-----TTTGTATATT-TAATGATC--TAA----------ACCA-----TTCCTAATTATACGAA---AAACCTCTT-AAAAGTAATAATGAA--TCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTCCGTAT
dp5 3:14834615-14835024 + GGAGGCGGTCTACGCATACGAGCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACGC----CTTT--------------------------------------TGTTTACAGTCGTAG-TTC--GTATAGACT-AGATCTA-----------TTAGA-----TC-GCCTCT----TTTCC--------CTCA----C--TCTA---AAT----------------TCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGG--------------G------------TAGTTTGTAG-------------------------------C-------------------ACAAGTG---------------ATTG----AA-ACTGAAA----CTTC-TAAAGCAA-ATAAAA-------------------AAGA-----------ATGACTAATTTT--A--T-------A-A---TAA-CAATCAAA--CGTTTTATATT-TAACGACC--TAA----------ACCA-----TTTTT-GAAACACGCA---TAACATACT-AAAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAG
droPer2 scaffold_4:4217142-4217554 - GGAGGCGGTCTACGCATACGAGCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACGC----CTTT--------------------------------------TGTTTACAGTCGTAG-TTC--GTATAGACT-AGATCTA-----------TTAGA-----TC-TCCTAT---TT-TCC--------CTCA----C--TCTA---AAT----------------TCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGG--------------G------------TAGTTTGTAG-------------------------------CA----------------CAACAAGTG---------------ATTG----AA-ACTGAAA----CTTC-TAAAGCAA-ATAAAA-------------------AAGA-----------ATGACTAATTTT--A--T-------A-A---TAA-CAATCAAA--CGTTTTATATT-TAACGACC--TAA----------ACCA-----TTTTT-GAAACACGCA---TAACATACT-AAAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAG
droWil2 scf2_1100000004954:2159283-2159372 - TTTTTTTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT------A--------------------------AAAGCATAAA---AAAAACTTT-AATAACAATAATTAT--A----CA-ATTTGATAAAACTTCCATGTATAAAA---------------------ATGCTGTCACAT
droVir3 scaffold_12875:19340831-19341188 - dvi_7957 AGAGGTGGCCTACGAGTATGATCA------TCGCATGCC---CAAGCGTAGCGCACCATCGGGCTATGAATACACCAAACGTAAGTTGAG---CCA-ACGA----------TTTGTAGC---------------------------------------------TA--G---------AAAACCC-----------TTAAA---------------------------------------ACA--------------------------------------ACTTATTTAGGGTGGGGA---TT---GGG--------------TAT---------TGGGATTCAA-----------------------------------C-------CAAATAAATAATATCG---------------ATTG----CA-TAAA-------CT-ATTAAAAAA-AA--------AAAA---ACAA-GCATTTGAA--------CGATGACTAATTTT--T----------A-A-AATAA-CAAAT------TTTCTATTTA-TAACTTTA--TAT----------ACCTACTGAATTTT-TACGTACATA---TAACATATT-AAAAA------TGAA-------TA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCTGCATATAAACGGCCTCAG
droMoj3 scaffold_6496:13039058-13039468 - AGAGGTGGCCTACGAGTATGATCA------TCGCATGGC---CAAGCGTGGCGCACCATCTGGATATGAATACACCAAACGTAAGTTAAG---CCA-ACGA----------TTCGTAGCGAGTATACCTTAGAAA------------T------------------------------------------------------------------------------------------------CCC---AACTATGAACAACAACATAACAATGGGGG--ATCTTCTCTTAGTGCGGGTCGAT---ACGAAATCTAAATCGT-TATAAA-TCAAA-TTGATTGCAT-------------------------------TATC-------TATGCAAAT----------------------------------------------G--------------TCTAAATATT---AAAATGCAGTTGAGCTAACTGATGATGACTAATTCT--T----------ATGCAATAA-CAAACTAT--CTCTCTACATA-TAATAAC-----------TCTATACCTATTCAATTTA-TATAAATGTA---TAACATATT-TAAAAT------GCA--T----AACATTTTATAGCACGCCCATCAATAATACCAACAAGCGCAGCTGCATATAAACGGCCACAG
droGri2 scaffold_15245:6841568-6841970 - AGAGGTGGCCTACGAGTACGATCA------TCGGATGCC---CAAGCGTGGAGCACCATCAGGATATGAATACAACAAACGTAAGTGGAT---------GC----ATTTTATTTGTGGT-TGTGTTTCTTTCAGA------------TCCTTGTATAAGTCAATAC--TTATTTTTG-GAGGGTA-----------TT-----------TCCTGT------------------------------------------------------TTTTT-------------------TTTTTAC-CTT---GA--------------TAATAAAGTAATA-TTGATTGCAT----------------------TTTGGAC--AAAC-------AGTGC------------------------------------------AA----TTGT-TATAACA--------------TATAATAATGCATTTGAG-------GCGATGACTAATTTT--T----------A-TAAATAA-CAAAA------TTTCTATTTATGAACT------ATATAACTATATACCTATTCAAATTG-TTGATAACTA---TAACATATT-AAA------AATGCA--T----AA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCCGCATATAAACGACCTCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGAGGT---------------------------TATGCCCCCCAGTCAT---CCGCCTACGAGCTATGAGTACAGGAAACGTAAGTA---------------------------------------------------------------------------TTTG--GTAGTGCCG-GGGTCCA-----------TTACATAAGATT-G------------------------------------------T----------------TTTATGGG----ATG------------------------GG-------------ATATAGAT-----TTAGATACGAT----------------------T------ATTATCGAGTATTA--ACTGATAACAGTG---------------AATG----AG-CAAGA--------TCTCAGATCA-AA--------CTAT---ATAAAACACTAGA-----------ATGACTAATATT--A--TAATATTAT-A---CAA-CGATTAAC--TTCTT--TATAGTAATT------A--------------------------CATACACGCA---TAAATTACT-ACTAATAATAATCAA--C----CA-ATTTTATAGCACTTCCATTAATAATACCGGAAAACGCAGTGGCATATAAACGTCCATATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................ACAGGAAACGTAAGTA---------------------------------------------------------------------------TTTG--GTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.33100000000001000000
..........................................................................................................................................................................................................................................................................................................................................T-----TTAGATACGAT----------------------T------ATTATCGAGTAT......................................................................................................................................................................................................................................................................................................................2530.33100000000001000000
droSec2
GGAGGTGGTCTATGA---------------TCTTATGCCCCCCAGTCAT---CCGCCTACGAGCTATGAGTACAGGAAACGTAAGTA---------------------------------------------------------------------------TTTG--GTAGTGCCG-GGGTCCA-----------TTACATAAGATT-G------------------------------------------T----------------TTTATGGG----ATGCATCTTTGACGGGAA--CTT---GGG-------------AT-----------TTAGATACGAT----------------------T------ATTATCGAGTATTA--ACTGACAACAGTG---------------AATG----AT-CAAGA--------TCTCAGATCA-AA--------CTAT---ATAATACACTACA-----------ATGACTAATATT--A--TAATATTAT-A---CAA-CGATTAAC--TTCTT--TATAGTAATT------A--------------------------CATACACGCA---TAAATTACT-ACTAATAATAATCAA--C----CA-ATTTTATAGCATTTCCATTAAAAATACCGGAAAACGCAGTGGCATATAAACGTCCATATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GGAGGTGGCCTATGAGTATGAACA------TCGTATGCCCCCCAAGCGT---CCGCCTACGGGCTATGAGTACAGCAAACGTAAGTTAAT---CCC-AAGCATGCAT-------------------TCTT---TA------------T--------------TTGG--GTAGTGCCG-GGGTCTA-----------TGACATAAGATC-GATTTTTCCCC-TGA-------ATGCA---------CC---AGT----------------TTTTTGGG----ATGCACCTTTGACAGGAA-CTTT---GGG-------------TTATAGA-T-----TAGATTAGAT---CA-----------------T------ACTATC-------AAAACCAATAACTGTG---------------ATTG----AG-CAAGC--------TCTCAGATCA-AA--------CTAT---ATAATACACTGGA-----------ATGATTAATATT--A----------T-G---CAA-CGATTCAC--TCCTT--TATAGTAATT------A--------------------------CATACACGCA---TAAAATACT-ACAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................ATAAGATC-GATTTTTCCCC-TGA-------ATGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGCGGCATATAAACGTCC....2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................GGCTATGAGTACAGCAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AAGCGT---CCGCCTACGGGCTATGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................ACGGGCTATGAGTACAGCAAACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGCGGCATATAAACGTCCAT..2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCCCCAAGCGT---CCGCCTACGGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAC--TCCTT--TATAGTAATT------A--------------------------CATA.......................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACTGGA-----------ATGATTAATATT--A----------T-G---C..........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................T---CCGCCTACGGGCTATGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TTTGACAGGAA-CTTT---GGG-------------TTATAGA-...............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAT---ATAATACACTGGA-----------ATGATT....................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCGACAAACGCAGCGGC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGCACGTCCATCAATAATA.................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AACTGTG---------------ATTG----AG-CAAGC--------TCTCAGA.......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAA--C----CA-ATTTTATAGCACGTCCA..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
........................................CCCAAGCGT---CCGCCTACGGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-ATTTTATAGCACGTCCAT.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGCATATA...........2611.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGCAGCGGCATATAA..........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGCATAT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CAA-CGATTCAC--TCCTT--TATAGTAATT------A--------------------------CATACAC....................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................ACTGTG---------------ATTG----AG-CAAGC--------TCTC..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGGCATATAAACGTCCA...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAATAATACCGACAAAC........................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGA-----------ATGATTAATATT--A----------T-G---...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................A------TCGTATGCCCCCCAAGCGT---CCGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AACTGTG---------------ATTG----AG-CAAGC--------..............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--C----CA-ATTTTATAGCACGTC............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
......................................CCCCCAAGCGT---CCGCCTACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGGCATATAAACGTC.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGACAAACGCAGCGGC................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAATAATACCGACAA..........................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AAGCGT---CCGCCTACGGGCTATGAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................CCCCAAGCGT---CCGCCTACGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAATACCGACAAACGCAGC...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGTG---------------ATTG----AG-CAAGC--------T.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................AAGCGT---CCGCCTACGGGCTATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................CGGGCTATGAGTACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAATAATCAA--C----CA-ATTTTATAG..................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGAGGTGGCCTATGAGTATGAACA------TCGTATGCCCCCCAAGCGT---CCTACCACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCAT-------------------TCTT---AT---------------TTTC--------TTTC--TTAGTGGCG-GGGTCTA-----------TTCCA---------------------------------------CTCCGCC---AGT----------------TGTATGGG----ATGAACCTTTGATTAGAAT-CTT---GGG-------------TG------------T---CA---G-------------------------------TATC-------AAAACAAATAACAATG---------------AATG----AG-CAAGA--------TCTCGAATCA-AA--------CTAT---ATAAT-CTCTGGA-----------ATGATTAATA-----------------------ATCGAACCAC--TTCC---TATAGTAATT------A--------------------------CACACACGCA---TAAACTACT-ACAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................TACCACGGGCTATGAGTACAGCAAACCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGA-----------ATGATTAATA-----------------------ATCG.....................................................................................................................................................................1911.0010000010
droYak3
GGAGGTGGCCTATGAGTATGAACA------TCGTATGCCTCCCAAGCGT---CCCACTACGGGCTATGAGTACAGCAAACGTAAGTGGAA---CCC-AAGCATGCAT-------------------TCTT---AA------------TTT-----------GTTTC--TTAGTGCCG-GGGCCTA-----------TTACA---------------------------------------CTCCCCC---ATT----------------TTGAGGGG----ATGCACCTTTGATTTGAAT-CTT---GGG-------------TCACAGA-----A-TAGATTATAG-------------------------------TATC-------AAAACCGATAACAGTG---------------AATG----AG-CAAGA--------TCTTGAAACA-AA--------CTAT---ATAACACTCTGGA-----------ATGATTAATATT--A----------A-A---GAA-CAAACCAC--TTCC---TATAGTAATT------A--------------------------CATACACGCA---TAAACTACT-ACAAATAATAATCAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................ACGGGCTATGAGTACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
......................................................CACTACGGGCTATGAGTACAGCAAACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAGCACGTCCATCAAT.....................................2111.00101000000000
.................................TATGCCTCCCAAGCGT---CCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...GGTGGCCTATGAGTATGAACA------TC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...............GTATGAACA------TCGTATGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AACCGATAACAGTG---------------AATG----AG-C..........................................................................................................................................................................................................................................................................2111.00100000010000
................................GTATGCCTCCCAAGCGT---CCCACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCAGCGGCATATAAAC........2011.00100000010000
droEug1
GGAGGTGGCCTACGAGTATGAGCA------CCGTATGCCTCCCAAGCGC---CCACCCACAGGCTATGAGTACAGCAAACGTAAGTTGAG---ACCAATGCATACTT----------------------AACTGC------------TCCTTTCAGCCGTAG----------TGTCG-ATA--TATTACACAATCATTAGATAAGATT-GCTTAC----------------ACAAA----CAATCCC---AGT----------------TTTATGGG----ATGCACTTTGGATGGGGTTCCTT---GGG--------------T------------TAGATTGTAG-------------------------------TATC-------AATACCAATACAAGTG---------------AATG----AA-CAAAAA-----ATTCTCAATGCAAAA--------CTGC---ATAATATTCT-------------------TAATTTT--A----------A-A---TAA-CAAAAAAA--GTCT------------T------A--------------------------TATACTCGCA---TAACATAATAAAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATATCTACAAACGGAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotal
No Reads
droBia1
GGAGGTGGCCTACGAGTATGAGCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGTG---CAA-ATGCATGCTA----------------------TTCTAT------------CCCTTTCAGCCGTAGATTC--GTAGAACCG-GGGTCTA-----------TTAGATAAAAGC-GCTTTCTACCT-TCC-------G-----------TCCC---CGT----------------TTTGTGGACCGTTTGCACCTTTGATGGGGCTCCTT---GGG--------------T------------TATATTGTAGTAGCAG-------------------------AACC-------AGTACCAATACCAATA------------ATCAATG----AA-CAATAA-----CTTCTCAATGCAAAA--------CTAT---ATAATACTCTGGA-----------ATGATTAAATTT--A----------C-A---TAA-CGAACAAC--TTTTTTATATAGTAATG------A--------------------------TATACACGCA---TAACATACT-AAAAGTAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotal
No Reads
droTak1
GGAGGTGGCCTACGAATACGAGCA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGTTT----------------------TTCTGT------------TCCTTTCAGCCGTAGATTC--GTAGTGCCG-GGGTCTA-----------TTAGATAAGATC-GCTTTCCGCCT-TCC-------AAGCA----CTGTCCC---AAT----------------TAAAGGGG----TTGCACTTTGGATGGGGCTCCTT---GGG--------------T------------TAGATTGTAGTATCAGTATCAGTACCTGTTCC-------GATACC-------AGTACCAAAACCAGTG---------------AATG----AA-CAATAA-----CTTCTCAATGCAA-A--------ATAT---ATAATACTCTGGA-----------ATGATTAATTTT--A----------A-A---TAA-CAAAAAAC--TTTTTTATATTGTAATG------A--------------------------TATATGCGCA---TAACATACT-AAAAATAATAATAAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotal
No Reads
droEle1
GGAGGTGGCCTACGAGTATGAGCA------CCGTATGCCCCCCAAGCGT---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-TTGCATGCCT----------------------TTCTAA------------TTCTTTCAGCCGTAGATTC--GTAGAGCCG-GGGTCTA-----------TTATATAAAATC-GACTCTTACCT-TCC-------ACGCA----CTCCCCA---AGT----------------CTTGTGGG----TTGCACTTTGGTTGGGATTCCTT---GGG--------------C------------AAGCTTGTAG----AG-------------------------TATC-------ATTACCAATACCAATA---------------AATG----AA-CAAGAA-----CTTATTAATGCAAAA--------GTAT---GTAATACTTTGTA-----------ATGATTTATTTA--A----------A-A---TAA-CAAACAAC--TTTTTTATATAGTAATGATT------------------------------GATACACGCAACGTAACTTACT-AAAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotal
No Reads
droRho1
GGAGGTGGCCTACGAGTATGAACA------CCGTATGCCCCCCAAGCGT---CCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGAG---CCC-ATGCATGATT----------------------TTCTAA------------TTCTTTCAGCCGTAGATTC--GTAGTGCCG-GGGTCTA-----------CTAGATAAGATT-TCCCTTTGCCT-TCC-------ACGCA----CTCCCCA---ATA----------------TTTTTGAG----TTGCACTTTGGATGGGGCTCCTT---GGG--------------T------------CATATTGGAG-------------------------------TATC-------AGTACCAATACCAGTG---------------AATG----AA-CAAGAA-----CTTCTCAATGCAAAA--------ATAT---ATAATACTCTTGA-----------ATGATTAATTTT--A----------A-A---TAA-CGAAATAC--TTTTTTATATAGTAATA----------------------------------ATACACGCA---TAACTTACT-AAAAATAATAATGAA--A----CA-ATTTTATAGCACGTCCATCAATAATACCAACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotal
No Reads
droFic1
GGAGGTGGCCTACGAATACGAGCA------CCGTATGCCCCCCAAGCGT---CCACCTACGGGCTATGAGTACAGCAAACGTAAGTTGGGTCGCTC-ATGCATGCTC----------------------TTCTAT------------CCCTCTCAGCTGTAGATTC--GTAGTGCCG-GGGTCTA-----------GTAGTTAAGATC-GCCT-CTGCCT-TCC-------ACGCA----CCATTCC---AAT----------------TCTATGGA----TTGCACTTTGGCTGGGGTACCTC---GGG--------------T------------TAAACTGTAG-------------------------------TATCA------AGTACCAGTAACAGTG---------------AATG----AA-CAAGAA-----CTTCTCAATGCAA-AAAAAAAAAGAAT---ATAATACTCTGGA-----------ATGATTAATTTT--A----------A-A---TAA-CGCAAAAACCTTTTCTATATAGTAACG----------------------------------ATACACGCA---TAAACTACT-AAAAATAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAACGCAGCGGCATATAAACGTCCATATSizeHit CountTotal NormTotal
No Reads
droKik1
GGAGGCGGCCTACGAATACGAGCA------CCGTTTGCCCCCCAAGCGC---GCACCCACGGGCTATGAGTACAGCAAACGTAAGTGGCA-TGACC-AAGCATGATT----------------------TTTTGCCCTCTAGCTACATTTTTTCAGCCTTAGATCTACATATATAATTATATCTA-----------TTAGA-----TC-CCTTCT----T-TCCATCCTCATTGCATTCAC--T-CCATTTA-----------------TTTATGGGGCA-CAGCACTTTGAATGGGTTTCCTT---GGG--------------A------------TAGATTGTAG-------------------------------CAAC----------A-CAGAACCAGTG---------------AATG----AA-CGAGAAAT--GCTTCTCAATGCAA-A--------TAAC---ATAATTTACTAGA-----------AAAATT----TTCAAAATA------A-A---CT--AAAATA-----TCTTTAT-TC-TAATGATCGATAA----------ACTT-----TT--T-TAAAT---AA---TAACTGACT-AAAAATAATAATGAA--C----AA-ATTTTATAGCACGTCCATCAATAATATCAGCAAACGCAGCGGCATATAAACGACCATATSizeHit CountTotal NormTotal
No Reads
droAna3
GGAGGTGGTTTACGAATACGAGCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCAT-------------------TCTTTCCGA------------TCTTTTCATCCTTAGAGAA--TTAATGCTG-GGATCCG-----------TTAGATTGGATCCGCCTGCAGCCT-CCA-------GTTCA----CCTTTTA---CAT----------------TTTGCGGG----TTGCACTTTTGATGGGCTTCCTTTTGGGG--------------G------------TAGACAGTAT-------------------------------TG--------------TAGAACCAGTGAATGAAACAAAAACAAAAGAAAAAACCA-AAA-----AATCTTCATGCAA----------TAAT---ATAATACTTTGGA-----------ATGAATAATTTT--A----------A-A---TAA-TAACCA-----TTTGTATATT-TAATGATC--TAA----------ACCA-----TTCTTAATTATACACA---TAACCAGTT-TAAAGTAATAATGAAAATCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTCCGTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAACAAAAGAAAAAACC..........................................................................................................................................................................................................................................................................2111.001010000
................TACGAGCA------CCGTTTGCCCCCAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
........................................................................................................................................................................................G-----------TTAGATTGGATCCGCCTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................TCCG-----------TTAGATTGGATCCGCCTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAAAAGAAAAAACC..........................................................................................................................................................................................................................................................................1960.171010000
droBip1
GGAGGTGGTTTACGAATACGAGCA------CCGTTTGCCCCCAAAACGC---CCGCCCACGGGCTACGAGTATAGTAAACGTAAGTGGT----CCC-TTGCACGCAT-------------------TCTTTCCGA------------TCCTTTCATCCTTAGAGAA--TTAATGCTG-GGATCCG-----------TTAGATTGGATTCGCTTGCAGCCT-CCA-------ATTCA----CCTTTTA---GAT----------------ATTGCGGG----TTGCACTTTTGATGGGCTTCCTT-TGGGG--------------G------------TAGACAGTAG--------------------------------------------------AAACAGTGAATGAAACAAAAACAAA-------AACAAAAAATAAGTTGCAATATGCA--A--------TAAT---ATAATACTCTGGA-----------ATGACTAATTTT--A----------A-A---TAA-TAACCA-----TTTGTATATT-TAATGATC--TAA----------ACCA-----TTCCTAATTATACGAA---AAACCTCTT-AAAAGTAATAATGAA--TCAATGA-ATTTTATAGCACGTCCATCAATAATACCAACAAGCGCTGCGGCTTATAAACGTCCGTATSizeHit CountTotal NormTotal
No Reads
dp5
GGAGGCGGTCTACGCATACGAGCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACGC----CTTT--------------------------------------TGTTTACAGTCGTAG-TTC--GTATAGACT-AGATCTA-----------TTAGA-----TC-GCCTCT----TTTCC--------CTCA----C--TCTA---AAT----------------TCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGG--------------G------------TAGTTTGTAG-------------------------------C-------------------ACAAGTG---------------ATTG----AA-ACTGAAA----CTTC-TAAAGCAA-ATAAAA-------------------AAGA-----------ATGACTAATTTT--A--T-------A-A---TAA-CAATCAAA--CGTTTTATATT-TAACGACC--TAA----------ACCA-----TTTTT-GAAACACGCA---TAACATACT-AAAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................TACAGCAAACGTAAGTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..............................TCGTATGCCTCCCAAGCGTGGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000000
droPer2
GGAGGCGGTCTACGCATACGAGCATCCACATCGTATGCCTCCCAAGCGTGGCCCACCCACCGGCTATGAGTACAGCAAACGTAAGTGGAGTTGATA-ACGC----CTTT--------------------------------------TGTTTACAGTCGTAG-TTC--GTATAGACT-AGATCTA-----------TTAGA-----TC-TCCTAT---TT-TCC--------CTCA----C--TCTA---AAT----------------TCTAGGGG----TCGCACTTTCGATGGGTTTCGTT---GGG--------------G------------TAGTTTGTAG-------------------------------CA----------------CAACAAGTG---------------ATTG----AA-ACTGAAA----CTTC-TAAAGCAA-ATAAAA-------------------AAGA-----------ATGACTAATTTT--A--T-------A-A---TAA-CAATCAAA--CGTTTTATATT-TAACGACC--TAA----------ACCA-----TTTTT-GAAACACGCA---TAACATACT-AAAAGTAATAATGAA--C----CA-ATTTTATAGCACGTCCATCAATAATACCGACAAATGCAGCGGCTTATAAACGTCCACAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................CTA-----------TTAGA-----TC-TCCTAT---TT-TCC--------CTCA----C--C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droWil2
TTTTTTTTTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT------A--------------------------AAAGCATAAA---AAAAACTTT-AATAACAATAATTAT--A----CA-ATTTGATAAAACTTCCATGTATAAAA---------------------ATGCTGTCACATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AGAGGTGGCCTACGAGTATGATCA------TCGCATGCC---CAAGCGTAGCGCACCATCGGGCTATGAATACACCAAACGTAAGTTGAG---CCA-ACGA----------TTTGTAGC---------------------------------------------TA--G---------AAAACCC-----------TTAAA---------------------------------------ACA--------------------------------------ACTTATTTAGGGTGGGGA---TT---GGG--------------TAT---------TGGGATTCAA-----------------------------------C-------CAAATAAATAATATCG---------------ATTG----CA-TAAA-------CT-ATTAAAAAA-AA--------AAAA---ACAA-GCATTTGAA--------CGATGACTAATTTT--T----------A-A-AATAA-CAAAT------TTTCTATTTA-TAACTTTA--TAT----------ACCTACTGAATTTT-TACGTACATA---TAACATATT-AAAAA------TGAA-------TA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCTGCATATAAACGGCCTCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................AGCGTAGCGCACCATCGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000002000000000000000000000000000000000000000000
...................................................................................AGTTGAG---CCA-ACGA----------TTTGTAGT---------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
.........................................................ATCGGGCTATGAATACACCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TTAGGGTGGGGA---TT---GGG--------------TAT---------TGGGA.....................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GGTGGGGA---TT---GGG--------------TAT---------TGA.......................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAACAAACGCAGCTGCATAT............2211.001000000000000001000000000000000000000000000000000000000000000000
....................................GCC---CAAGCGTAGCGCACCATCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................TATGATCA------TCGCATGCC---CAAGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................ATACACCAAACGTAAGTTGAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
...........ACGAGTATGATCA------TCGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
AGAGGTGGCCTACGAGTATGATCA------TCGCATGGC---CAAGCGTGGCGCACCATCTGGATATGAATACACCAAACGTAAGTTAAG---CCA-ACGA----------TTCGTAGCGAGTATACCTTAGAAA------------T------------------------------------------------------------------------------------------------CCC---AACTATGAACAACAACATAACAATGGGGG--ATCTTCTCTTAGTGCGGGTCGAT---ACGAAATCTAAATCGT-TATAAA-TCAAA-TTGATTGCAT-------------------------------TATC-------TATGCAAAT----------------------------------------------G--------------TCTAAATATT---AAAATGCAGTTGAGCTAACTGATGATGACTAATTCT--T----------ATGCAATAA-CAAACTAT--CTCTCTACATA-TAATAAC-----------TCTATACCTATTCAATTTA-TATAAATGTA---TAACATATT-TAAAAT------GCA--T----AACATTTTATAGCACGCCCATCAATAATACCAACAAGCGCAGCTGCATATAAACGGCCACAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGAGGTGGCCTACGAGTACGATCA------TCGGATGCC---CAAGCGTGGAGCACCATCAGGATATGAATACAACAAACGTAAGTGGAT---------GC----ATTTTATTTGTGGT-TGTGTTTCTTTCAGA------------TCCTTGTATAAGTCAATAC--TTATTTTTG-GAGGGTA-----------TT-----------TCCTGT------------------------------------------------------TTTTT-------------------TTTTTAC-CTT---GA--------------TAATAAAGTAATA-TTGATTGCAT----------------------TTTGGAC--AAAC-------AGTGC------------------------------------------AA----TTGT-TATAACA--------------TATAATAATGCATTTGAG-------GCGATGACTAATTTT--T----------A-TAAATAA-CAAAA------TTTCTATTTATGAACT------ATATAACTATATACCTATTCAAATTG-TTGATAACTA---TAACATATT-AAA------AATGCA--T----AA-ATTTTATAGCACGCCCATCAATAATACCAACAAACGCAGCCGCATATAAACGACCTCAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:44 AM