ID:

dsi_17091

 Coordinate:

3r:10160406-10160555 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-1.8 -1.8 -1.7

Flybase annnotation

exon [3r_10160556_10160706_-]; five_prime_UTR [3r_10160556_10160706_-]; intron [3r_10158972_10160555_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGCAATTAAACGGTTATATTTTAGTACTTTCTAAGAAACAACACACAAGGTAAGCGTTTATTTACATTTCACTATTTATTTTATTGTAAAAAAAAAGTGCGACGAACTATATTAAGTTTGCCGGAAAATAATTTAGAATCTAACCACGTGTTTTTGTAGCCCCTATACTATTTAATCAATACTCGCAAAGTAGGCAAAGTTTGTCGAACTTTCGACCCCAGTGAGTAACGCTTCGATGCACACTCATAT
*************************************************************************************************************...........((..(((((((..((((...)))).....)))))))...))..*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M053
female body
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902008
ovaries
 O001
Testis
 O002
Head
 SRR618934
dsim w501 ovaries
.........AACGGTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 28 0 1 35.00 35 22 11 0 0 0 1 0 0 1 0 0 0 0 0
.........................TACTTTCTAAGAAACAACACACAAGA....................................................................................................................................................................................................... 26 1 1 15.00 15 7 7 0 0 0 0 0 0 1 0 0 0 0 0
..........ACGGTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 27 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......TAAACGGTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 30 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.........AACGGTTATATTTTAGTACTTTCTA........................................................................................................................................................................................................................ 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AAAAAAACAGTCCGACGATC.............................................................................................................................................. 20 3 9 2.78 25 0 0 22 0 0 0 0 0 0 0 3 0 0 0
.........................................................................................AAAAAACAGTCCGACGATC.............................................................................................................................................. 19 3 20 2.00 40 0 0 35 0 0 0 0 0 0 0 5 0 0 0
..........................ACTTTCTAAGAAACAACACACAAGA....................................................................................................................................................................................................... 25 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................CACGTGTTTTTGTAGCCC....................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................................AAAAAAAAAGTCCGACGATCAATA.......................................................................................................................................... 24 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AAAAAAACAGTCCGACGAA............................................................................................................................................... 19 2 3 1.67 5 0 0 4 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................ATATTAAGTTTGCCGGAAAAT........................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CGCAAAGTAGGCAAAGTTTG.............................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................GCCGGAAAATAATTTAGAATC............................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TTTATTGTAAAAAAAAAGTGCGAC.................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...CAATTAAACGGTTATATTTTAGT................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........AAACGGTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGGCAAAGTTTGTCGAACTTTC.................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCAGTGAGTAACGCTTCGATG........... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........CGGTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......TAAACGGTTATATTTTAGTACT............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................ATATTAAGTTTGCCGGAAAATAAT..................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.AGCAATTAAACGGTTATATTTTAGTACT............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........AACGGTTATATTTTAGTAC.............................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................TATTGTAGTACTTGCAAAGAAACA................................................................................................................................................................................................................. 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................AGAAACAACACACAAGGGAAG................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....AATTAAACGGTTATATTTTAGTACTTT........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................ATTTTATTGTAAAAAAAAAGTGCGAC.................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............GTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................GTACTTTCTAAGAAACAACACACAAG........................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................ATTTAGAATCTAACCACGTGT.................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........CGGTTATATTTTAGTACT............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........GACGGTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.AGCAATTAAACGGTTATATTTTAGTACTT............................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......TAAACGGTTATATTTTAGTACTTTCTA........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TACGGTTATATTTTAGTACTTTCTAAGA..................................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................AAACAACACACAAGGTAA.................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................AACAACACACAAGGTAAGC.................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TTCGACCCCAGTGAGTAACG................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................CTTTCTAAGAAACAACACACAAGA....................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TTGTCGAACTTTCGACCCCAGTGA......................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................GAAACAACACACAAGGTAAGCG................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................TACTTTCTAAGAAACAACACACAAGT....................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGTTTGTCGAACTTTCGACCCC.............................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGCCGGAAAATAATTTAGAATC............................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................CTAAGAAACAACACACAAGA....................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTAACGCTTCGATGCACACTC.... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......TTAAACGGTTATATTTTAGTACT............................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................AAAAAAAGTGCGACGAAC.............................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................GTACTTTCTAAGAAACAACACACAA......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................GAAACAACACACAAGGTAAGCGTT............................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................TACTTTCTAAGAAACAACACACAAGAT...................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................GAACTATATTAAGTTTGCCGGAAAAT........................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTTTGTCGAACTTTCGA.................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........AACGGTTATATTTTAGTACT............................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAAAAAGTCCGACGATC.............................................................................................................................................. 18 2 9 0.89 8 0 0 8 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AAAAAAACAGTCCGACGA................................................................................................................................................ 18 2 9 0.78 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AAAAAAAAAGTCCGACGA................................................................................................................................................ 18 1 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGGCAAAGTTTGTCGCA......................................... 18 2 9 0.67 6 0 0 0 0 0 0 0 0 6 0 0 0 0 0
..........................................................................................................ACTTGATTAAGTTTGCCGGA............................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTATTATATTGTATAAAAAAATTGCGA................................................................................................................................................... 27 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................TTTATTATATTGTATAAAAAAATTGCGA................................................................................................................................................... 28 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................AAAAAAAAGTCCGACGATCGAT........................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........CGGTTATATTTTAGT................................................................................................................................................................................................................................ 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TTAGTGTATTGTAAAAAAAAA......................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................TAAAAAAACAGTCCGACGATC.............................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................AAAAAAAAAGTCCGACGATC.............................................................................................................................................. 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................AAAAAAAGTCCGACGAACGAAA.......................................................................................................................................... 22 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AAAAAACAGTCCGACGATCT............................................................................................................................................. 20 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................AAAAAAAAGTCCGACGATC.............................................................................................................................................. 19 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAAAAAGTCCGACGA................................................................................................................................................ 16 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TATATAAAAAAAGTCCGACGA................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................TAAAAAAACAGTCCGACGAAA.............................................................................................................................................. 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................ACTAGTGATTTTGTTGTAAAA.............................................................................................................................................................. 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................AAAAAAGTCCGACGAA............................................................................................................................................... 16 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CCTGTACTAGTTAATCA....................................................................... 17 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................AAAAGTCCGACGAAC.............................................................................................................................................. 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AAAACAGTCCGACGATCTA............................................................................................................................................ 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAAAAAAGTCCGACGA................................................................................................................................................ 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................AAAAAAACAGTCCGACG................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AAAAAAACAGTCCGACGAAA.............................................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGCAAAGTTTGTCGCA......................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................AGTCCAACGATCTATATTA....................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATCGTTAATTTGCCAATATAAAATCATGAAAGATTCTTTGTTGTGTGTTCCATTCGCAAATAAATGTAAAGTGATAAATAAAATAACATTTTTTTTTCACGCTGCTTGATATAATTCAAACGGCCTTTTATTAAATCTTAGATTGGTGCACAAAAACATCGGGGATATGATAAATTAGTTATGAGCGTTTCATCCGTTTCAAACAGCTTGAAAGCTGGGGTCACTCATTGCGAAGCTACGTGTGAGTATA
***************************************************************************************...........((..(((((((..((((...)))).....)))))))...))..************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................................................................................................................AGCTTGAGAGCTGGGG.............................. 16 1 1 2.00 2 2 0 0 0 0 0
........................................................................................................................................................................................................................GGGGTCACTCGTTGCGGAGCT............. 21 2 1 1.00 1 0 1 0 0 0 0
......................................TGTTGTGTGTTCCATTCGCAA............................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................AGCTTGGAAGCTGGGG.............................. 16 1 3 0.33 1 1 0 0 0 0 0
.................................................................GTAAGGCGAGAAATAAAATAAC................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 1 0 0
.............................................................................................................................................................................................................GCTTGAGAGCTGGAGTCC........................... 18 3 20 0.20 4 0 0 0 4 0 0
..............................................................................................................................................................................................................CTTGAAGGCTGGGGT............................. 15 1 5 0.20 1 1 0 0 0 0 0
..................................................................................................ACGCTGGTTGAACTAATTCAA................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 1
.............................................................................................................................................................................................................GCTTGAGAGCTGGAGTC............................ 17 2 11 0.18 2 0 0 0 2 0 0
.......................................................................................................................................................AAAAAAAGCGGGGATATGA................................................................................ 19 2 6 0.17 1 0 0 0 0 1 0
............................................................................................................................................................................................................AGCTTGAGAGCTGGG............................... 15 1 6 0.17 1 1 0 0 0 0 0
............................................................................................................................................................................................................AGCTTGAGAGCTGGAGTCC........................... 19 3 10 0.10 1 0 0 0 1 0 0
............................................................................................................................................................................................................AGCTTCAAAGTTGGGGTGA........................... 19 3 12 0.08 1 0 1 0 0 0 0
............................................................................................................................................................................................................AGCTTGAACGCTGGG............................... 15 1 15 0.07 1 1 0 0 0 0 0
............................................................................................................................................................................................................AGCTTGGGAGCTGGGGT............................. 17 2 16 0.06 1 0 0 0 0 1 0
.............................................................................................................................................................................................................GCTTGAGAGCTGGAGT............................. 16 2 20 0.05 1 0 0 0 1 0 0
.......................................................................................................................................................AAAAACTTCGGGGCTAT.................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 10:32 AM