ID:

dsi_17086

 Coordinate:

3r:4326771-4326920 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.5 -19.1 -19.0 -19.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCAGCGCGAATCAGAAACACATCCAATTACTGATAAATAAACACAAAAGGTGGGTGCCAATTTATTTTCTTTCTGAAATTATCGAAAACCTGATTTACTTCACTGCCTTTATTTTCTTTTTGTGTTGATATGAGCGCTTGACGTTTGATTTTCCCCGAATCTTTTCCTCTGCCTTTTCGGTGACTAAGTTGAGTGGGTGGGAAATTCCCCCAGCTGGCGGCGACGCTGGGAAAATACCCAAAAATCGCC
**************************************************.((...(((((((((...((...((((((.............(((((((.(((..((.(((((..((..........)).))))).)).))).))............))))).............)))))).)).))))))).))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................................................TGATATGAGCGCTTGACGTTT....................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCTTCACTGCCTTTATTGACT.................................................................................................................................... 21 3 3 0.67 2 0 2 0 0 0 0 0
.......................................................................................................................................ATCTTGACGTTTGATTTTCC............................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0
...........................................................................GAAACTGTCGAAAACCGGATT.......................................................................................................................................................... 21 3 4 0.50 2 0 0 2 0 0 0 0
............................................................................................................................GTTGATATGATCCCCTGAC........................................................................................................... 19 3 8 0.38 3 0 0 0 2 1 0 0
...........................................................................................................................................................CCGAATCTTTTCGTCGGCGTT.......................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0
...........................................................................GAAACTGTCGAAAACCGGATTT......................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................TCCGACAGCTGGCGGCGACGTT...................... 22 3 4 0.25 1 0 0 0 0 0 1 0
........................................................................................................................................GCTTGACGTTTGATTTGCACT............................................................................................. 21 3 4 0.25 1 0 1 0 0 0 0 0
............................................................................AAACTGTCGAAAACCGGATT.......................................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................GCTAGCGGCGCCGCTGG.................... 17 2 20 0.05 1 0 0 0 0 0 1 0
...........................................................................................................................................................CCGAATCTGTTCCTGTG.............................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

CGGTCGCGCTTAGTCTTTGTGTAGGTTAATGACTATTTATTTGTGTTTTCCACCCACGGTTAAATAAAAGAAAGACTTTAATAGCTTTTGGACTAAATGAAGTGACGGAAATAAAAGAAAAACACAACTATACTCGCGAACTGCAAACTAAAAGGGGCTTAGAAAAGGAGACGGAAAAGCCACTGATTCAACTCACCCACCCTTTAAGGGGGTCGACCGCCGCTGCGACCCTTTTATGGGTTTTTAGCGG
**************************************************.((...(((((((((...((...((((((.............(((((((.(((..((.(((((..((..........)).))))).)).))).))............))))).............)))))).)).))))))).))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................CTATACTCGCGAACTGCA......................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................GGACTAAGTGAAGTGACGA.............................................................................................................................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................ACTGCAAACTAAAAGGGGCTT.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCGCCGCTGCGACCCTTTT............... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TTATGGGTTTGTAGC.. 15 1 15 0.20 3 0 0 0 0 0 3 0 0 0 0
............................................................................................................................CAGCTATACTCGAGAAC............................................................................................................. 17 2 10 0.20 2 0 0 0 0 0 0 2 0 0 0
............................................................................................................................CAGCTATACTTGCGAACTG........................................................................................................... 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................TTTTGGACTACATGATGTGT................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0
........................................................................AGTTTTTAATAGCTTTTGGCC............................................................................................................................................................. 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0
.............TCTGTGTGTAGGTTGATG........................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................CAGCTATACTTGCGAACT............................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0
.................................................................................TAGCTGTTGGACTAATTG....................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0
..................ATGTTGGTTAATGACTAT...................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................ACCGCTGGTGCGACCCT.................. 17 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1
.....GCGATTAGTCTTTGT...................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................CAGCTATACATGCGAACTG........................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................TTGGACTAGATCAAGTG.................................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0
...........AGTCTTTGTGTAAGT................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0

Generated: 04/24/2015 at 01:33 AM