ID:

dsi_17050

 Coordinate:

2l:3559915-3560044 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_3560045_3560183_-]; CDS [2l_3560045_3560162_-]; CDS [2l_3559703_3559914_-]; exon [2l_3559666_3559914_-]; intron [2l_3559915_3560044_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------##################################################
CCACCACCGCACAGATGCCAGATTCGTGCCCGGTCCGCCTTCGATACCCAGTGAGTAGCCAGATCGACAGGGGGTGTCACAGAAGTAAAAGTTGTTACCATGCCGCAATTGATTAGTTTTTCCTTTCTGCGACCCCCAAAAAAAAAGTTCGTTGAACATCAATAATTATTTACTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGAT
**************************************************.(((((((............((((.(((.(((((((((.((((((.........))))))..)))........)))))).)))))))........((((.(((((...)))))))))..)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..................................................................................................................................................................................................................AGGGCGTTTGTGCCATTGAT 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....ACCGCACAGATGCCAGAT............................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....CACCGCACAGATGCCAGATTCGTG.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................TCGCTAGGTATTTGCAAAA...................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....GCCGCACAGATGCCAGATTCGTGCCCGG..................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TTTGCAAAAAACCACCGCCACGTTCGG.................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............ATGCCAGATTCGTGCCCG...................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................CACCGCCACGTTCGGAGGG................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................AAAAAACCACCGCTACG......................... 17 1 3 0.33 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................TTGACTCGTTAGGTA............................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0
..AATACCGCACAGATGGCAGA................................................................................................................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................CAATTATTTACTCGTT.................................................... 16 1 14 0.07 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................AAAACGTTCGTTGAA.......................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................AAAAAAAATACGTTGAACA........................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGTGGTGGCGTGTCTACGGTCTAAGCACGGGCCAGGCGGAAGCTATGGGTCACTCATCGGTCTAGCTGTCCCCCACAGTGTCTTCATTTTCAACAATGGTACGGCGTTAACTAATCAAAAAGGAAAGACGCTGGGGGTTTTTTTTTCAAGCAACTTGTAGTTATTAATAAATGAGCAATCCATAAACGTTTTTTGGTGGCGGTGCAAGCCTCCCGCAAACACGGTAACTA
**************************************************.(((((((............((((.(((.(((((((((.((((((.........))))))..)))........)))))).)))))))........((((.(((((...)))))))))..)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
....................................................................................................................................................AGCAACTTCTCGTTATTAA............................................................... 19 2 1 31.00 31 9 9 7 5 0 0 1 0 0 0 0
....................................................................................................................................................AGCAACTTCTCGTTATTA................................................................ 18 2 6 6.00 36 9 3 8 13 0 0 1 0 2 0 0
....................................................................................................................................................AGCAACTTCTCGTTATTAATG............................................................. 21 3 4 3.75 15 15 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGCAACTTCTCGTTATTAAT.............................................................. 20 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................GAGCAACTTCTGGTTATTA................................................................ 19 3 20 1.20 24 0 4 0 0 0 0 0 20 0 0 0
.........................................................................................TCAACAATGGTACGGCGTTAA........................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAAATTTTTTTGGTGGCGATG.......................... 21 3 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................AGCAACTTGTAGTTATTAAT.............................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................AACGTGTTTTGGTGGCGATG.......................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................CTGGGGGTTTTTTTTTCA.................................................................................. 18 0 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0
.....................................................................................................................................................GCAACTTCTCGTTATTAA............................................................... 18 2 5 0.80 4 0 3 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................GCAACTTCTCGTTATTAAT.............................................................. 19 2 3 0.67 2 0 0 0 1 0 0 0 0 0 1 0
.....................................................................................................................................................GCAACTTCTAGTTATTAA............................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................ATGGTACGGCGTTAACA...................................................................................................................... 17 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................AGCAACTTCTTGTTATTAAT.............................................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
......................AAGCAGGGGCCAGGCGGT.............................................................................................................................................................................................. 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................ACCTAATCAAAAAGGAAAGTCGGT.................................................................................................. 24 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCAACTTCTGGTTATTA................................................................ 17 2 17 0.29 5 0 0 0 0 0 0 0 4 1 0 0
......................................................................................................................................................CAACTTCTCGTTATTAA............................................................... 17 2 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGCAACTTCTCGTTATTAATT............................................................. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................ATCCGTCTAGCTGTC................................................................................................................................................................ 15 1 8 0.25 2 0 0 0 0 0 0 2 0 0 0 0
....................................................................................................................................................AGCAACTTCTGGTTATTAA............................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................AGCAACTTTTCGTTATTAA............................................................... 19 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGCAACTTCTTGTTATTA................................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GAGCAACTTCTCGTTATTA................................................................ 19 3 20 0.15 3 0 0 2 1 0 0 0 0 0 0 0
........................................................................................................................AGGAAAGACGGTGGGG.............................................................................................. 16 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................GCAACTTCTGGTTATTAA............................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGTTTTTTGGTGGCGATG.......................... 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TGGCGGTGCAAGCTC................... 15 2 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
..........................AGGGCCCAGGCGGAAGC........................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0
....GTGTCGTGTCTACGGTAAAA.............................................................................................................................................................................................................. 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................CAACTTCTCGTTATTAAT.............................................................. 18 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................AAAAGGCTGGGGGTTTTTT....................................................................................... 19 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
.....................................GGAAACTATGGGTCAGTG............................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................CCCCCCAGTGTGTTCGTTT............................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:3559865-3560094 - dsi_17050 CCACCACC------------GCACAGATGCCAGATTCGTGCCC---GGTCCGCCTTCGATACCCAGTGAGTAG-CCAGATC------------GACAGGGGGT--------GTCACAGAAGTAAAAGTTGTTACCATGCCG---------------------CAATTG-------------------------------------------------ATTAGT-------------------------------------------------------------------------TT-TTCCTTTCTGCGACCCCCAAAAAAAAAGTTCGTT---GAACATCA----------ATAATTATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGAT
droSec2 scaffold_5:1802277-1802505 - CCACCGCC------------GCACAGATGCCAGATTCGTGCCC---GGTCCGCCTTCGATACCCAGTGAGTAG-CCAGATC------------GACAGGGGGT--------GTCACAGAAGTAAAAGTTGTTACCATGCCG---------------------CAATTG-------------------------------------------------ATTGGT-------------------------------------------------------------------------TT-TTCCTTTCTGCGACCCCCAAA-GAAGAGTTCGTT---GAACATCA----------ATAACTATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGAT
dm3 chr2L:3706742-3706971 - CCACCGCC------------GCATAGATGCCAGATTCGTGCCC---GGTCCGCCTTCAATACCCAGTGAGTAG-CCAAATC------------GACAGGGGGT--------GTCACAGAAGTAAAAGTTGTTACCATGCCG---------------------CAATTG-------------------------------------------------TTTAGT-------------------------------------------------------------------------TTTTTCCTTTCTGTGAGCCCCAAA-AAAGAGTTCGTT---GAACATCA----------ATAATTATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGAT
droEre2 scaffold_4929:3751649-3751889 - CCACCGCC------------GCACAGATGCTAGATTCGTGGCC---GGTCCGCCTTCGATACCCAGTGAGTAG-CCTGATC------------GATC-GGGGT--------GTCACAGAAGCAAAAGTTGTTACCATGCCAGAATGTCATTCGCA--------AAATG-------------------------------------------------ATTGGT-------------------------------------------------------------------------TT-TTCCTTGCTGCGACCCCCAGG-AAACAGTACGTT---GAACATGA----------ATAATGATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGAT
droYak3 2L:3703782-3704023 - CCACCACTGCC---------GCACAGATGCTAGATTCGTGCCC---AGTCCGCCAGCGATACCCAGTGAGTAG-CCTGATCGACGACGACGACGACG-GGGGT--------GTCACAGAAGTAAACGTTGTTACCATGCCA----------------------AAATG-------------------------------------------------ATTAGT-------------------------------------------------------------------------AC-CTTCTTTCTGCGACCCCCAAG-CTAAAGTTCGTT---GAACATCA----------CTAATGATTTA--ATCGCTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAAGGCGTTTGTGCCATTGAT
droEug1 scf7180000409554:2371978-2372071 + CCATCACG------------GCACAGATGCTAGAGTCA------------CGCAGACAATGCCCAGTGAGTAG-CCACATC------------GT-T-GGTGT--------GCCACAGAACCATATA--------------------------------------------------------------------------------GAGATTGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT
droBia1 scf7180000302261:2088221-2088312 - CCACCACCACA---------GCACAGACGCTCGGTTCGTGGCCTCCGGCGTGCCTTCGATACCCAGTGAGTAG-CCACTTG------------GGCT-GTGGT--------GTCTCGGAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415709:155241-155343 + CCACCACC------------GCACAGACGCCCGATTCGTGGCCTCCGGTGCTCCTCTGATTCCCAGTGAGTAG-CCACTTT------------GACT-GGGGT--------TTCACAGAGATACAAA--------------------------------------------------------------------------------GGGATTGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490728:438236-438394 - CCACTACCACCACCACCACTCTACAGATGCTCGTTCTGTG------------CCGTCGATACCCAGTGAGTAAGACACACG------------TATT-GGGGT--------GACACAGAAATAAAAAAAAAAACCCTACAT---------------------AAATCT-------------------------------------------------ATGAAT-------------------------------------------TCCG--------------------------TT-TTCATTGCTGTCA------------------------------------------------------------CAGATATAT---------------------------------AAAAAATCCAT
droRho1 scf7180000779523:433290-433440 - CCACCACC------------ACACAGATGCTCGTTCTGTG------------CCGTCGATACCCAGTGAGTAG-CCACACG------------GATT-GGGGT--------GCCACAGAAAAA---GC--ATATCTAGCCA---------------------TAAATC-------------------------------------------------TTTAAT-------------------------------------------------------------------------TT---TCTGTCTTATATCTCTAAA-ATGAAGTTTTAT---GACTA--A----------ATTATTATTT-------------------------------------------------------------
droFic1 scf7180000453924:1689656-1689837 - CCACCAGG------------GCTCAGAAGCCCGATTCA------------------CATTACCCAGTGAGTAG-CCAC--C------------GAGT-GGGGT--------AGCACTGTTATGGGAGT------------G---------------------CCCTT-------------------------------------------------------------------------------------------CGTCA----------------------------------------------------------AAGGAGTTTATTATTTAACA-CAATGACCGTTTGTAA----TTC--ATCGTTAGGTATTTGCCGAAAGCCGCCTCCCCGTTCCGAGGGCGTTTGTGCCATCGAT
droKik1 scf7180000302270:893340-893639 + CCAACACCAAG---------TCACAGATGCTTGGAGCTTGCGCAGCAG---------CATGCCGGGTGAGTAG-AGAGACT------------GGGG-----TTTTGAGGTGCCAAAGAAGTAGTAATTA-------ATTAGGATTTACATTTATATTTTAGCTAGAGATTTACTGAAGTAAATTTATAAATCTACAGAGATCTACAGAGATTTTTA-------------AAATATTTTTAATTATATTATTTCCTT--GTAATATTTACACAAAACAATAA---------------------------------------------TA----------CTTTT----------TATTCTATTTT--CTTAACAGATTATTGCTATAAGCCACCGCCACGTTCCGAGGGCATTTGCACCATCGAA
droAna3 scaffold_12916:5770288-5770560 - CTACCACC------------CCGCAGAGGCACGATACGTCGGA---TCCTCGCAATCGATACCGGGTGAGTTG-CCAGCCA------------ACCT-GG-----------GCCACAAA-TCAACAGTAGACAATTAATTAGAATGAAATTTGATTGTGGTGCTGGTG-------------------------------------------------GTGGGTGATTTTGAATTATGGCTCAGAGTTTGTTTACCTTCAGTCAAGGTGACACAT--CATTGG---------------------------------------------TCCTAC---AGACATTA----------ATTTGGTTTTT--CACCTCAGATATTTGCAATCAACCTCCTCCCCGATCCGATGGCGTTGGCACTATAGAG
droBip1 scf7180000396568:1068945-1069205 + CCTCCACC------------CCGCAGAGGCGCGATACGCC------------GGATCCATTCCGGGTGAGTAG-CCAGCCA------------ACCT-GG-----------GCCAGAAA-CCAAACGGAGATAATTAATTAGAAAGAAATTCGATTGTGGCGTC-----------------------------------------------------GTGGGTGATTTGGAATTATGGCGTAGAGTTTGTTTACCTTTAGTCAAGGTGACACAT--CATTGGCTCCACAGACTTAAAT-TTGA---------------------------------------------------A-----TTTTG--TACCACAGATATTTGCAACCAGCCTCCTCCTCGTTCCGATGGCGTTGGCACAATAGAG
dp5 4_group3:5023565-5023741 + CCTACAGC------------CCATAGAGGCACGTTTCTTGCCCCCAGGCCTGCCCGTGATACCGAGTGAGTAG-TGGGAGG------------AAGAGGGTCG--------GTC--------------CATTTCCGACCCA---------------------CATTTC-------------------------------------------------TTATGA-------------------------------------------------------------------------AC-TTCT---------------------------------------------------GTTG----TGC--TTCGTCAGATATTTGTAAGCAGCCACCGCCGCGGTCTCTGGGTATTTGCACCATCCAG
droPer2 scaffold_1:6514996-6515172 + CCTACAGC------------CCATAGAGGCACGTTTCTTGCCCCCAGGCCTGCCCGTGATACCGAGTGAGTAG-TGGGAGG------------AAGAGGGTCG--------GTC--------------CATTTCCGACCCA---------------------CATTTC-------------------------------------------------TTATGA-------------------------------------------------------------------------GC-TTCT---------------------------------------------------GTTG----TGC--TTCGTCAGATATTTGTAAGCAGCCACCGCCGCGGTCTCTGGGTATTTGCACCATCCAG
droWil2 scf2_1100000004521:9401770-9401857 + AAAAGCT----------------TTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAA-------------------------------------------------------------------------AT-TTCA---------------------------------------------------T-----TTCTG--CCTTCTAGATATTTGCCATCAACCTCCGCCACGATCGTCGGGAATATGTACTGTGGAA
droVir3 scaffold_12963:15009479-15009535 + TCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATATTTGCATGAAGCCACCGCCGTTCTCCGAGGGTATGTGTACCATTGAG
droMoj3 scaffold_6500:17980364-17980433 + TGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTTGTTGCAGACATTTGCCTAAAGCCGCCGCCCTTCTCTGAGGGCATGTGCACCATTGAG
droGri2 scaffold_15126:4374299-4374458 - TCAACATT-----------------GAGACGCGCTATGTG------------CCCGGCATACCACGTGAGTCG-AGAA--------------------GAGGA--------ATCGCAGAGATAATAGGTGCCA--GTGCCA---------------------TCACTA-------------------------------------------------ATTATT-------------------------------------------------------------------------GT--------------------------------------------------------ATTC----TAT--TTCGATAGATTTTTGCCTCAAACCGAGGCCGGTCTCTATCGGCATCTGCACCATCGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCACCACC------------GCACAGATGCCAGATTCGTGCCC---GGTCCGCCTTCGATACCCAGTGAGTAG-CCAGATC------------GACAGGGGGT--------GTCACAGAAGTAAAAGTTGTTACCATGCCG---------------------CAATTG-------------------------------------------------ATTAGT-------------------------------------------------------------------------TT-TTCCTTTCTGCGACCCCCAAAAAAAAAGTTCGTT---GAACATCA----------ATAATTATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGTTTGTGCCATTGAT2011.00100000100000000000
.....ACC------------GCACAGATGCCAGAT......................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
....CACC------------GCACAGATGCCAGATTCGTG.................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTGCAAAAAACCACCGCCACGTTCGG....................2711.00100000001000000000
..........................ATGCCAGATTCGTGCCC---G..........................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CACCGCCACGTTCGGAGGG................1911.00110000000000000000
droSec2
CCACCGCC------------GCACAGATGCCAGATTCGTGCCC---GGTCCGCCTTCGATACCCAGTGAGTAG-CCAGATC------------GACAGGGGGT--------GTCACAGAAGTAAAAGTTGTTACCATGCCG---------------------CAATTG-------------------------------------------------ATTGGT-------------------------------------------------------------------------TT-TTCCTTTCTGCGACCCCCAAA-GAAGAGTTCGTT---GAACATCA----------ATAACTATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCACGTTCGGAGGGC...............1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................AAAAAACCACCGCCACGTTCGGAGGGCG..............2811.0010010
........................................................................G-CCAGATC------------GACAGGGGGT--------GTCACAGAAG................................................................................................................................................................................................................................................................................................................2811.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................AAAAAACCACCGCCACGTTCGGA...................2311.0011000
....................................................................................................................................................................................................................................................................................................................................................ATCA----------ATAACTATTTA--CTCGT.....................................................2011.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGCCACGTTCGGA...................1911.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................CACCGCCACGTTCGGAGGGC...............2011.0010010
dm3
CCACCGCC------------GCATAGATGCCAGATTCGTGCCC---GGTCCGCCTTCAATACCCAGTGAGTAG-CCAAATC------------GACAGGGGGT--------GTCACAGAAGTAAAAGTTGTTACCATGCCG---------------------CAATTG-------------------------------------------------TTTAGT-------------------------------------------------------------------------TTTTTCCTTTCTGTGAGCCCCAAA-AAAGAGTTCGTT---GAACATCA----------ATAATTATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................AGATTCGTGCCC---GGTCCGCCTTCA...............................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCGGAGGGCGTTTGTGCC......2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AATTATTTA--CTCGTTAGGTATTTGCA.........................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GCC------------GCATAGATGCCAGAT......................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................G-CCAAATC------------GACAGGGGGT--------G.........................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CCACCGCCACGTTCGGAGGGC...............2112.0020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................GATGCCAGATTCGTGCCC---GGT........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGCCACGTTCGGAGGGC...............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................TGCCC---GGTCCGCCTTCAATACCCAGTA.....................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATGCCAGATTCGTGCCC---GGT........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGAGGGCGTTTGTG........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TC------------GACAGGGGGT--------GTCACA....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................ACCACCGCCACGTTCGGAGGGCGTT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CGCCACGTTCGGAGGGCGTTTGTGC.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................G-CCAAATC------------GACAGGGGGT--------..........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................ATC------------GACAGGGGGT--------GTCAC.....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
.................................ATTCGTGCCC---GGTCCGCCTTC................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................CACCGCCACGTTCGGAGGGCGTTTGTG........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................ATTCGTGCCC---GGTCCGCCTTCAAT.............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GATTCGTGCCC---GGTCCGCCTTC................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GGTCCGCCTTCAATACCC.........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGTTCGGAGGGCGTTTG..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CA----------ATAATTATTTA--CTCGTTAG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................AGATGCCAGATTCGTGCCC---GG.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................T--------GTCACAGAAGTAAAAGT.........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
......................................TGCCC---GGTCCGCCTTCAATAC...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................CACCGCCACGTTCGGAGGGC...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.....................CATAGATGCCAGATTCGTGCC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATACCCAGTGAGTAG-CCA............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.................................................................GTGAGTAG-CCAAATC------------GACAGGGGG...................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CCACGTTCGGAGGGCGTTTGTGCCA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....GCC------------GCATAGATGCCAGATTCG...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................ACCCAGTGAGTAG-CCAAA..........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCACGTTCGGAGGG................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..........................ATGCCAGATTCGTGCCC---GGTCCGC....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droEre2
CCACCGCC------------GCACAGATGCTAGATTCGTGGCC---GGTCCGCCTTCGATACCCAGTGAGTAG-CCTGATC------------GATC-GGGGT--------GTCACAGAAGCAAAAGTTGTTACCATGCCAGAATGTCATTCGCA--------AAATG-------------------------------------------------ATTGGT-------------------------------------------------------------------------TT-TTCCTTGCTGCGACCCCCAGG-AAACAGTACGTT---GAACATGA----------ATAATGATTTA--CTCGTTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAGGGCGTTTGTGCCATTGATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................AAAACCACCGCCACGTTCGGAGGGC...............2511.0011000000
.................................ATTCGTGGCC---GGTCCGCCTTCG...............................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.....GCC------------GCACAGATGCTAGATTCGTGGCC---...........................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
....................................CGTGGCC---GGTCCGCCTTCGATACCCA........................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................AACCACCGCCACGTTCGGA...................1911.0011000000
....................GCACAGATGCTAGATTCGT..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
CCACCACTGCC---------GCACAGATGCTAGATTCGTGCCC---AGTCCGCCAGCGATACCCAGTGAGTAG-CCTGATCGACGACGACGACGACG-GGGGT--------GTCACAGAAGTAAACGTTGTTACCATGCCA----------------------AAATG-------------------------------------------------ATTAGT-------------------------------------------------------------------------AC-CTTCTTTCTGCGACCCCCAAG-CTAAAGTTCGTT---GAACATCA----------CTAATGATTTA--ATCGCTAGGTATTTGCAAAAAACCACCGCCACGTTCGGAAGGCGTTTGTGCCATTGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................CACAGATGCTAGATTCGTGC................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
droEug1
CCATCACG------------GCACAGATGCTAGAGTCA------------CGCAGACAATGCCCAGTGAGTAG-CCACATC------------GT-T-GGTGT--------GCCACAGAACCATATA--------------------------------------------------------------------------------GAGATTGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATSizeHit CountTotal NormTotal
No Reads
droBia1
CCACCACCACA---------GCACAGACGCTCGGTTCGTGGCCTCCGGCGTGCCTTCGATACCCAGTGAGTAG-CCACTTG------------GGCT-GTGGT--------GTCTCGGAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCACCACC------------GCACAGACGCCCGATTCGTGGCCTCCGGTGCTCCTCTGATTCCCAGTGAGTAG-CCACTTT------------GACT-GGGGT--------TTCACAGAGATACAAA--------------------------------------------------------------------------------GGGATTGTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCACTACCACCACCACCACTCTACAGATGCTCGTTCTGTG------------CCGTCGATACCCAGTGAGTAAGACACACG------------TATT-GGGGT--------GACACAGAAATAAAAAAAAAAACCCTACAT---------------------AAATCT-------------------------------------------------ATGAAT-------------------------------------------TCCG--------------------------TT-TTCATTGCTGTCA------------------------------------------------------------CAGATATAT---------------------------------AAAAAATCCATSizeHit CountTotal NormTotal
No Reads
droRho1
CCACCACC------------ACACAGATGCTCGTTCTGTG------------CCGTCGATACCCAGTGAGTAG-CCACACG------------GATT-GGGGT--------GCCACAGAAAAA---GC--ATATCTAGCCA---------------------TAAATC-------------------------------------------------TTTAAT-------------------------------------------------------------------------TT---TCTGTCTTATATCTCTAAA-ATGAAGTTTTAT---GACTA--A----------ATTATTATTT-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCACCAGG------------GCTCAGAAGCCCGATTCA------------------CATTACCCAGTGAGTAG-CCAC--C------------GAGT-GGGGT--------AGCACTGTTATGGGAGT------------G---------------------CCCTT-------------------------------------------------------------------------------------------CGTCA----------------------------------------------------------AAGGAGTTTATTATTTAACA-CAATGACCGTTTGTAA----TTC--ATCGTTAGGTATTTGCCGAAAGCCGCCTCCCCGTTCCGAGGGCGTTTGTGCCATCGATSizeHit CountTotal NormTotal
No Reads
droKik1
CCAACACCAAG---------TCACAGATGCTTGGAGCTTGCGCAGCAG---------CATGCCGGGTGAGTAG-AGAGACT------------GGGG-----TTTTGAGGTGCCAAAGAAGTAGTAATTA-------ATTAGGATTTACATTTATATTTTAGCTAGAGATTTACTGAAGTAAATTTATAAATCTACAGAGATCTACAGAGATTTTTA-------------AAATATTTTTAATTATATTATTTCCTT--GTAATATTTACACAAAACAATAA---------------------------------------------TA----------CTTTT----------TATTCTATTTT--CTTAACAGATTATTGCTATAAGCCACCGCCACGTTCCGAGGGCATTTGCACCATCGAASizeHit CountTotal NormTotal
No Reads
droAna3
CTACCACC------------CCGCAGAGGCACGATACGTCGGA---TCCTCGCAATCGATACCGGGTGAGTTG-CCAGCCA------------ACCT-GG-----------GCCACAAA-TCAACAGTAGACAATTAATTAGAATGAAATTTGATTGTGGTGCTGGTG-------------------------------------------------GTGGGTGATTTTGAATTATGGCTCAGAGTTTGTTTACCTTCAGTCAAGGTGACACAT--CATTGG---------------------------------------------TCCTAC---AGACATTA----------ATTTGGTTTTT--CACCTCAGATATTTGCAATCAACCTCCTCCCCGATCCGATGGCGTTGGCACTATAGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................AGAGGCACGATACGTCGGA---TC.........................................................................................................................................................................................................................................................................................................................................................................................21111.0011300224
....................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTCCCCGATCCGATGG................21110.0010900001
.......................................................................................................................................................................................................................................................................................................................................................................................................TCCTCCCCGATCCGATGGCGT.............2118.008200006
.......................CAGAGGCACGATACGTCGGA---T..........................................................................................................................................................................................................................................................................................................................................................................................2117.007000016
........................................................................................................................................................................................................................................................................................................................................................................................................CCTCCCCGATCCGATGGCGTT............2116.006100014
.TACCACC------------CCGCAGAGGCACGA.......................................................................................................................................................................................................................................................................................................................................................................................................2115.005200003
CTACCACC------------CCGCAGAGGCACG........................................................................................................................................................................................................................................................................................................................................................................................................2114.004210001
..............................................................................................................................................................................................................................................................................................................................................................................................CAATCAACCTCCTCCCCGATC......................2114.004300001
...............................................................................................................................................................................................................................................................................................................................................................................................AATCAACCTCCTCCCCGATCC.....................2114.004400000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTCCCCGATCCGATGGCGTTG...........2113.003300000
..................................TACGTCGGA---TCCTCGCAATCG...............................................................................................................................................................................................................................................................................................................................................................................2113.003300000
.............................CACGATACGTCGGA---TCCTCGC....................................................................................................................................................................................................................................................................................................................................................................................2113.003300000
...................................ACGTCGGA---TCCTCGCAATCGA..............................................................................................................................................................................................................................................................................................................................................................................2113.003100002
............................................................................................................................................................................................................................................................................................................................................................................................TGCAATCAACCTCCTCCCCGA........................2112.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................TTGCAATCAACCTCCTCCCC..........................2012.002200000
.................................ATACGTCGGA---TCCTCGCAATC................................................................................................................................................................................................................................................................................................................................................................................2112.002100001
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATCCGATGGCGTTGGCACT......2112.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................CTCCTCCCCGATCCGATGGCG..............2112.002100001
..........................................................................................................................................................................................................................................................................................................................................................................................TTTGCAATCAACCTCCTCCCC..........................2112.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................TCCTCCCCGATCCGATGGCG..............2012.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTCCCCGATCCGATGGC...............2212.002000002
...............................................................................................................................................................................................................................................................................................................................................................................................AATCAACCTCCTCCCCGATCCG....................2211.001100000
.......C------------CCGCAGAGGCACGATACGTCGGA---TCC........................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.....................CGCAGAGGCACGATACGTCGG...............................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................AACCTCCTCCCCGATCCGATGGCGTTGGC.........2911.001000010
.....................CGCAGAGGCACGATACGTCGGA---...........................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
......................................TCGGA---TCCTCGCAATCGATAC...........................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...CCACC------------CCGCAGAGGCACGATACGTC.................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.................................................................GTGAGTTG-CCAGCCA------------ACCT-GC-----------..........................................................................................................................................................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTCCCCGATCCGATG.................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATGGCGTTGGCACTATAT..2211.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGATCCGATGGCGTTGGCAC.......2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................CTCCCCGATCCGATGGCGTTGGC.........2311.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGTTGGCACTATAGAG2011.001000001
.....................................................AATCGATACCGGGTGAGTTG-...............................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................GA---TCCTCGCAATCGATACCGG........................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAATCAACCTCCTCCC...........................2111.001100000
..............................ACGATACGTCGGA---TCCTCGCA...................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATGGCGTTGGCACTATA...2211.001000001
.........................GAGGCACGATACGTCGGA---TCC........................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................TTTGCAATCAACCTCCTCCC...........................2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCCTCCCCGATCCG....................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................CTCCTCCCCGATCCGATGG................1911.001100000
.....................CGCAGAGGCACGATACGTCG................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
......................GCAGAGGCACGATACGTCGGA---...........................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................CGTCGGA---TCCTCGCAATCGA..............................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGATCCGATGGCGTTGG..........2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................TCAACCTCCTCCCCGATCCGA...................2111.001100000
..ACCACC------------CCGCAGAGGCACGAT......................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................CCGATCCGATGGCGTTGGCAC.......2111.001000010
....................CCGCAGAGGCACGATACGTCG................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCGTTGGCACTATAGT.1911.001100000
......CC------------CCGCAGAGGCACGATACGT..................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCCGATGGCGTTGGCA........2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................TATTTGCAATCAACCTCCT..............................1911.001100000
........................AGAGGCACGATACGTCGGA---T..........................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTGCAATCAACCTCCTCCCCG.........................2211.001000001
droBip1
CCTCCACC------------CCGCAGAGGCGCGATACGCC------------GGATCCATTCCGGGTGAGTAG-CCAGCCA------------ACCT-GG-----------GCCAGAAA-CCAAACGGAGATAATTAATTAGAAAGAAATTCGATTGTGGCGTC-----------------------------------------------------GTGGGTGATTTGGAATTATGGCGTAGAGTTTGTTTACCTTTAGTCAAGGTGACACAT--CATTGGCTCCACAGACTTAAAT-TTGA---------------------------------------------------A-----TTTTG--TACCACAGATATTTGCAACCAGCCTCCTCCTCGTTCCGATGGCGTTGGCACAATAGAGSizeHit CountTotal NormTotal
No Reads
dp5
CCTACAGC------------CCATAGAGGCACGTTTCTTGCCCCCAGGCCTGCCCGTGATACCGAGTGAGTAG-TGGGAGG------------AAGAGGGTCG--------GTC--------------CATTTCCGACCCA---------------------CATTTC-------------------------------------------------TTATGA-------------------------------------------------------------------------AC-TTCT---------------------------------------------------GTTG----TGC--TTCGTCAGATATTTGTAAGCAGCCACCGCCGCGGTCTCTGGGTATTTGCACCATCCAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................G-TGGGAGG------------AAGAGGGTCG--------G.........................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................TGCCCGTGATACCGAGTGAGTAG-TGG............................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
.........................................................GATACCGAGTGAGTAG-TGGGA..........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................CGCGGTCTCTGGGTATTTG..........1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCGCCGCGGTCTCTGG.................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTAAGCAGCCACCGCCGC..........................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGCGGTCTCTGGGTATT............2111.0010001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGGTATTTGCACCATCCA.2111.0010100000000
...............................CGTTTCTTGCCCCCAGGCCT......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................CGTCAGATATTTGTAAGCAGC...................................2111.0010100000000
..............................................................................................................................................................................................................................A-------------------------------------------------------------------------AC-TTCT---------------------------------------------------GTTG----TGC--TTCGTCA...................................................2111.0010100000000
....................................CTTGCCCCCAGGCCTGCCCGTGATAC...........................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
..............................ACGTTTCTTGCCCCCAGGCC.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
CCTACAGC------------CCATAGAGGCACGTTTCTTGCCCCCAGGCCTGCCCGTGATACCGAGTGAGTAG-TGGGAGG------------AAGAGGGTCG--------GTC--------------CATTTCCGACCCA---------------------CATTTC-------------------------------------------------TTATGA-------------------------------------------------------------------------GC-TTCT---------------------------------------------------GTTG----TGC--TTCGTCAGATATTTGTAAGCAGCCACCGCCGCGGTCTCTGGGTATTTGCACCATCCAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAAAGCT----------------TTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAA-------------------------------------------------------------------------AT-TTCA---------------------------------------------------T-----TTCTG--CCTTCTAGATATTTGCCATCAACCTCCGCCACGATCGTCGGGAATATGTACTGTGGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTCCGCCACGATCGTCGG.................2411.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGAATATGTACTGTGGA.2011.00100001
droVir3
TCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGATATTTGCATGAAGCCACCGCCGTTCTCCGAGGGTATGTGTACCATTGAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGAGGGTATGTGTACCAT....2111.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ACCGCCGTTCTCCGAGGGT...............1911.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................CCGTTCTCCGAGGGTATGTG..........2011.001000000000000000000000000000000000000000100000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCCACCGCCGTTCTCCG....................2111.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TTTGCATGAAGCCACCGCCGTC.........................2211.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTATTTGTTGCAGACATTTGCCTAAAGCCGCCGCCCTTCTCTGAGGGCATGTGCACCATTGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCCTTCTCTGAGGGCA..............2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................CATTTGCCTAAAGCCGCCGCC............................2111.001100000
droGri2
TCAACATT-----------------GAGACGCGCTATGTG------------CCCGGCATACCACGTGAGTCG-AGAA--------------------GAGGA--------ATCGCAGAGATAATAGGTGCCA--GTGCCA---------------------TCACTA-------------------------------------------------ATTATT-------------------------------------------------------------------------GT--------------------------------------------------------ATTC----TAT--TTCGATAGATTTTTGCCTCAAACCGAGGCCGGTCTCTATCGGCATCTGCACCATCGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......TT-----------------GAGACGCGCTATGTG------------CCCGGCATACC..........................................................................................................................................................................................................................................................................................................................................................................2811.00101
..............................................................................................................................................................................................................................................................................................................................................................................................................GTCTCTATCGGCATCTGCACCAT....2320.50110
.........................................................................................................................................................................................................................................................................................................................................................................................TTTTGCCTCAAACCGAGGCCGGTCTC......................2620.50110
..............................................................................................................................................................................................................................................................................................................................................................................................CCTCAAACCGAGGCCGGTCT.......................2020.50110

Generated: 05/19/2015 at 11:00 AM