dsi_17041

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

TCCGAAAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAAAAAACAAACCACCAGTTATATAAATCCCACCAGTAACGATGTACCATCCCACGAACTACTCAACTACAGTCTAATAATATTATTAAAAAATACAAATACAAAAACAATAATAAATATTGTGTATACAAATATAACAATTAAATTTTGTTAAGCCAAACCAAGAAATCA ************************************************(((((.........((((.....)))).........))))).....(((((.............)))))((((...)))).............................(((((((.....................)))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
..............................................GAAGGTTTGAATATAAACACAGATGTCCT...............................................................................................................................................................................	29	0	1	1.00	1	0	0	1	0	0	0
................TTTGTCGAGGAACGAACGATAATTGTCC..............................................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0
....................................................................ATGTCCTGTAAAAAAAA.....................................................................................................................................................................	17	0	1	1.00	1	1	0	0	0	0	0
..............................................................................................................ACCAGTAACGTTATACCA..........................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0
.........................................TCCAGGAAGCTTTGAATA...............................................................................................................................................................................................	18	2	6	0.17	1	0	0	0	1	0	0
................................................................ACAGATTGCCTTTAAAAAAAAA....................................................................................................................................................................	22	3	12	0.08	1	0	0	0	0	1	0
.........................GAAGGAACGATAATTGG................................................................................................................................................................................................................	17	2	16	0.06	1	0	0	0	0	0	1

AGGCTTTCTCCTTTGTAAACAGCTCCTTGCTTGCTATTAACAGGTTCTTCCAAACTTATATTTGTGTCTACAGGACATTTTTTTTTGTTTGGTGGTCAATATATTTAGGGTGGTCATTGCTACATGGTAGGGTGCTTGATGAGTTGATGTCAGATTATTATAATAATTTTTTATGTTTATGTTTTTGTTATTATTTATAACACATATGTTTATATTGTTAATTTAAAACAATTCGGTTTGGTTCTTTAGT ************************************************(((((.........((((.....)))).........))))).....(((((.............)))))((((...)))).............................(((((((.....................)))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
...................................................................................TCTGTTTGGTGGTCAATGTAT..................................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................GGGTGATCATTGCTA................................................................................................................................	15	1	2	0.50	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................AGACAATTCGGTTTGCTTGTTT...	22	3	4	0.50	2	0	0	2	0	0	0	0
..............................................................................................................................CTTGGGTGCTGGATGAGTTG........................................................................................................	20	3	5	0.40	2	0	0	0	2	0	0	0
........................................................................................................TTAGGCTGGTCATGGCTA................................................................................................................................	18	2	3	0.33	1	0	0	0	0	1	0	0
................................................................................................................................AGGGTGCTTGATGGGTTA........................................................................................................	18	2	4	0.25	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................GAATTCGGTTTGCTTGTTTAGT	22	3	5	0.20	1	0	0	1	0	0	0	0
............................................................................................................................................................................ATGTTTATGTGTTTATTATTATGT......................................................	24	3	7	0.14	1	0	0	0	0	0	1	0
................................................................................................................................AGGGTGCGTAATGAGTT.........................................................................................................	17	2	18	0.06	1	0	0	0	0	0	0	1
...................................................................................................TATATATAGAGTGGTCATTT...................................................................................................................................	20	3	19	0.05	1	1	0	0	0	0	0	0
................................................................................................................................AGGGTGCTCAATGAGT..........................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0	0
.......................................................................................................................................................AGAGTATTATAATAA....................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0
....................ACCTCCTGGCTTGCTA......................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	3l:1979280-1979529 -	dsi_17041	T-----CC--GAAAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA--AAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-A-----------------A---------------TACAAATAC---AAAAACAATAATA-AATATTGTGTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA
droSec2	scaffold_2:2106985-2107235 -		T-----CC--GAAAGAGGAAACATATGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA-AAAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-A-----------------A---------------TACAAATAC---AAAAACAATAATA-AATATTGTGTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA
dm3	chr3L:2076181-2076432 -		T-----CC--GAAAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAAAAAAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-A-----------------A---------------TACAAATAC---AAAAACAATAATA-AATATTGTGTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA
droEre2	scaffold_4784:2072430-2072678 -		T-----CC--GAAAGAGGAAACATTTGTTGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA--AAAAC-----------AAACCAC--CAGTTATAAAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-T-----------------A---------------TACA-ATAC---AAAAACAATAATA-AATATTGTCTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA
droYak3	3L:2034654-2034898 -		T-----CC--GAAAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA-AAAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----TA-A--------------------------------------ATAC---AAAAACAATAATA-AATATTGTCTATACA--AATATAACAATTAAA---A-TTTGTTAAGCCAAAC------C-AAAAAATCA
droEug1	scf7180000409091:192051-192303 +		A-----TC--GACAGAGGAAACATTTGTTGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAA----AAAC-----------AAACCAC--CAGTTAAATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGC--CTAATTAATATTATTA------------A----AA-A--------------A--A---------------TACAAATAC---AAAAACAATAATA-AATATTGTCTTTACG--AATATAACAATTAAA---TCTTTGTTAAGCCAAAC---G--AAAACAAATAA
droBia1	scf7180000302428:8803558-8803808 -		T-----TC--GACAGAGGAAACGTTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAA------AC-----------CAACCAC--CAGTTATATATA------TC---CCACCTGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTAATA------------A----AA-A-----------------A---------------TACAAAGAAGTTAAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAA------CAAACAAATCA
droTak1	scf7180000414400:7464-7696 -		T-----TC--GACAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAA------------------------------------TATATA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AA-A-------------GA--A---------------TACAAATAC---AAAAACAATAATA-AATATTGTCTCTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAC------CAAACAAATCA
droEle1	scf7180000491249:3414993-3415240 +		T-----TC--GACAGAGGAAACATTTGTTGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAAA---AA----------------ACAC--CAGTTAAATAAA------TC---CCACCAGTA---ACGATGTA---------GCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AAAA-------------GAAAATAC------------------TGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAA------CAAACAAATCA
droRho1	scf7180000779211:7160-7412 -		T-----TC--GACAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAAA--AATAC-----------AAACCAC--CAGTTAAATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AA-A-------------GAATATAC------------------TGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAC------CAAACAAATCA
droFic1	scf7180000453052:979612-979846 +		T-----TT--GACAGAGGAAACATTTGTCGAGGAACGAACGATTATTGTCCAAGAAGGTTTGAGCATAAACACAGATGTCCTGTAAAAA------------------AAACCAC--CAGTTAAATAAA------AC---CCACCAGTA-------------------------CC-AC-------GA-A----CTACTCAA----CTACAGT--CTTATTAATATTATTA------------A----AA-A-------------GAATATAC------------------TGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTGAGTAAAAC------CAAACAAATCA
droKik1	scf7180000302441:1727144-1727409 +		T-----TC--GACAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTTCTGTAAACA--AAAACAAAAAA--AAAAATCCAC--CAGTTATATAAA------TC---CCACCAGTAACAACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AAAA-------------GAATCAA------------------CTGC---AAAAACAATAATA-TATATTGTCTATACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAA------CAAACAAATCA
droAna3	scaffold_13337:748743-749001 +		T-----TC--GGCAGAGGAAACATTTGTCGAGGAGCGAACAATTATTGTCCAAGAAGGTTTGCACATAAACACAGACGATCTGTAATAA---AAAC-----------AAACCACCACAGTTATAAATA------TC---CCACCAGTA---ACGATGTATC-CAGTATCCATCCC-AC-------GA-A----CTACTCAA----CTACAAT--CTAATTAATATTA---------------A----AA-A-------------TAATAGAC------------------AGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-AATGTCAAGTCAAAC------AAAACCAATCA
droBip1	scf7180000395155:7363-7620 -		T------C--GCCAGAGGAAACATTTGTCGAGGAGCGAACAATAATTGTCCAAGAAGGTTTGCACATAAACACAGACGATCTGTAATAA---AAAC-----------AAACCACCACAGTTCTAAATA------TC---CCACCAGTA---ACGATGTATC-CAGTATCCATCCC-AC-------GA-A----CTACTCAA----CTACAAT--CTAATTAATATTA---------------A----AA-A-------------GAATAGAC------------------AGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-AATGTCAAGTCAAAC------AAAACCAATCA
dp5	XR_group6:11985104-11985384 -		TAACCCTCGTG-CAGAGGAAACTTTTATTGAGGAACGAACGATAATCGTTGAAGAAGGTTTGAACATAAACACAGATGATCTGTAAAAC---AAACAAACAAAAAAAAAACCAC--AAAATATATATAACGAAATCCTACCACCAGTA---ACGATGTATACCACCAA----C-----CAACCACGATCCCACCATATGAA----CTACAGT--CTCAAAAATATTAATATTTATGAC---------------------------------------------------ATTG---AAAAACAA--------AATAATTTACAAA--AATATAACAATTAAA---A-AA---AAAGAGAAAC---AAACAAAAAAATCA
droPer2	scaffold_33:5136-5414 -		TAACCCTCGTG-CAGAGGAAACTTTTATTGAGGAACGAACGATAATCGTTGAAGAAGGTTTGAACATAAACACAGATGATCTGTAAAAC---AAACAAACAA--AAAAAACCAC--AAAATATATATAACGAAATCCTACCACCAGTA---ACGATGTATACCACCAA----C-----CAACCACGATCCCACCATATGAA----CTACAGT--CTCAAAAATATTAATATTTATGAC---------------------------------------------------ATTG---AAAAACAA--------AATAATTTACAAA--AATATAACAATTAAA---A-AA---AAAGAGAAAC---AAACAAAAAAATCA
droWil2	scf2_1100000004729:1318376-1318603 +		A------C--G-TAGAGGAAACATTTGTCGAGGAACGCACAATAGTTGTCCATGAAGGTTTGAACATAAACACAGATGAACTGTAAAAC---AAATAAATAA-----------AC------------------------------------AAAATGTA--CCA----CCATCCC-AC-------GAAA----CTACTCAACTTACTACAGT--CTTATTAATATTATTT--------------------------------------------------------------------AAACAATAATAAAATATTGTCTTTAAA--AATATAACAATTAAAAATTTTTTGTTGAACCAAAAGCCG--AAAAAAAATCA
droVir3	scaffold_13049:12032615-12032847 +		A-----AC--G-TAGAGGAAACTTTTGTCGAGGAACGCACGATAGTAGTCCATGAAGGTTTGAACATAAACACAGATGAACTGTAAA----------------------TCCAC--------AATAAT------AC---CTACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----CTACTCAA----CTACAGTTACTACATAATATTATTACATA--------A----AA-A-----------------A---------------ACCAAAAAC-----AAACAATAATA-GATATTGACTTTTAA--AATATAACAATTAAA---T-TTTGTTAAACCAA-----------ACGAATCA
droMoj3	scaffold_6680:8788354-8788599 -		T-----AC--G-TAGAGGAAACATTTGTCGAGGAACGCACGATAGTTGTCGATGAAGGTTTGAACATAAACACAGATGAACTGTAAAG---------------------TCCAC-------AAATAAT------AC---CTACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----CTACTCAA----CTA--GTTACTACATCAATTTATGA-------CACTGAAAACAA-A-------------AAACATA-------------TTCAAAAAC-----AAACAATAATC-GATATTGACTTTTCAAATATATAACAATTAAA---T-TTTGTTAAACCAA-----------ACGAATCA
droGri2	scaffold_15110:11472613-11472876 +		A-----AC--G-TAGAGGAAACATTTGTCGAGGAACGCACGATAGTTGTCGATGAAGGTTTGAACTTAAACACAGATGAACTGTAAAT----------------------CCA--------AAATAAT------AC---CTACCAGTA---ATGATGTC---------CC---CCAATCAA----CA-A----CTACTCAA----CTACAGTTACAACATAATATTATTT------------A----AA-AAAAAAAAAAAAAAAAATTAAATGCAGACACAAATACAAATAC-----AATTAATAATT-GATATTGACTCTTTA--AATATAACAATTAAA---C-TTTGTTAAATCAAA-----------CGAATCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

T-----CC--GAAAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA--AAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-A-----------------A---------------TACAAATAC---AAAAACAATAATA-AATATTGTGTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................GAAGGTTTGAATATAAACACAGATGTCCT.........................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTTGTCGAGGAACGAACGATAATTGTCC........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGTCCTGTAAAAA--AAA.............................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

T-----CC--GAAAGAGGAAACATATGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA-AAAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-A-----------------A---------------TACAAATAC---AAAAACAATAATA-AATATTGTGTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............GAGGAAACATATGTCGAGGAACGAACGAT................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0
..................................................................TAAACACAGATGTCCTGTAAA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0

dm3

T-----CC--GAAAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAAAAAAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-A-----------------A---------------TACAAATAC---AAAAACAATAATA-AATATTGTGTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................TATTATTA------------A----AA-A-----------------A---------------TACAAAT........................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................GAAGGTTTGAATATAAACAC..................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CACAGATGTCCTGTAAAAA..................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GAGGAAACATTTGTCGAGGAACG......................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GAGGAAACATTTGTCGAGGAACGA.....................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................CAGATGTCCTGTAAAAAAA................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................A---------CCATCCC-AC-------GA-A----CTACTCAA----A.............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AAACCAC--CAGTTATATAAA------TC---................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGAGGAAACATTTGTCGAGGAACGAA....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ATTAAA---T-TTTGTTAAGCCA....................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................ACAGATGTCCTGTAAAAG..................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTTGTCGAGGAACGAATC..................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AAAAAAAAAAC-----------AAACCAC--CC.....................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

T-----CC--GAAAGAGGAAACATTTGTTGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA--AAAAC-----------AAACCAC--CAGTTATAAAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----AA-T-----------------A---------------TACA-ATAC---AAAAACAATAATA-AATATTGTCTATACA--AATATAACAATTAAA---T-TTTGTTAAGCCAAAC------C-AAGAAATCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................TTGAATATAAACACAGATGTCCT.........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................TTTGTTAAGCCAAAC------C-AAGAA....	21	1	1.00	1	1	0	0	0	0	0	0
..........................GTTGAGGAACGAACGATAATTGTCC........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................AGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CT........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

droYak3

T-----CC--GAAAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAATATAAACACAGATGTCCTGTAAAAA-AAAAAC-----------AAACCAC--CAGTTATATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAA-TAATATTATTA------------A----TA-A--------------------------------------ATAC---AAAAACAATAATA-AATATTGTCTATACA--AATATAACAATTAAA---A-TTTGTTAAGCCAAAC------C-AAAAAATCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................ATTTGTCGAGGAACGAACGATAA..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............AGGAAACATTTGTCGAGGAACGA.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............GAGGAAACATTTGTCGAGG..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................CAGTTATATAAA------TC---CCACCAGT........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GTCGAGGAACGAACGATAATTG...........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................C---CCACCAGTA---ACGATGTA---------CCATCCC-A..........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................AAACATTTGTCGAGGAACGAACGAT................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................TTTGTCGAGGAACGAACGATA...............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................GATAATTGTCCAAGAAGGTTTGAATATA.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................GATGTA---------CCATCCC-AC-------GA-A----CT........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

A-----TC--GACAGAGGAAACATTTGTTGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAA----AAAC-----------AAACCAC--CAGTTAAATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGC--CTAATTAATATTATTA------------A----AA-A--------------A--A---------------TACAAATAC---AAAAACAATAATA-AATATTGTCTTTACG--AATATAACAATTAAA---TCTTTGTTAAGCCAAAC---G--AAAACAAATAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T-----TC--GACAGAGGAAACGTTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAA------AC-----------CAACCAC--CAGTTATATATA------TC---CCACCTGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTAATA------------A----AA-A-----------------A---------------TACAAAGAAGTTAAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAA------CAAACAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T-----TC--GACAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAA------------------------------------TATATA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AA-A-------------GA--A---------------TACAAATAC---AAAAACAATAATA-AATATTGTCTCTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAC------CAAACAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T-----TC--GACAGAGGAAACATTTGTTGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAAA---AA----------------ACAC--CAGTTAAATAAA------TC---CCACCAGTA---ACGATGTA---------GCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AAAA-------------GAAAATAC------------------TGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAA------CAAACAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T-----TC--GACAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTCCTGTAAAAA--AATAC-----------AAACCAC--CAGTTAAATAAA------TC---CCACCAGTA---ACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AA-A-------------GAATATAC------------------TGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAC------CAAACAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

T-----TT--GACAGAGGAAACATTTGTCGAGGAACGAACGATTATTGTCCAAGAAGGTTTGAGCATAAACACAGATGTCCTGTAAAAA------------------AAACCAC--CAGTTAAATAAA------AC---CCACCAGTA-------------------------CC-AC-------GA-A----CTACTCAA----CTACAGT--CTTATTAATATTATTA------------A----AA-A-------------GAATATAC------------------TGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-CTTGTTGAGTAAAAC------CAAACAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T-----TC--GACAGAGGAAACATTTGTCGAGGAACGAACGATAATTGTCCAAGAAGGTTTGAACATAAACACAGATGTTCTGTAAACA--AAAACAAAAAA--AAAAATCCAC--CAGTTATATAAA------TC---CCACCAGTAACAACGATGTA---------CCATCCC-AC-------GA-A----CTACTCAA----CTACAGT--CTAATTAATATTATTA------------A----AAAA-------------GAATCAA------------------CTGC---AAAAACAATAATA-TATATTGTCTATACA--AATATAACAATTAAA---T-CTTGTTAAGTCAAAA------CAAACAAATCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

T-----TC--GGCAGAGGAAACATTTGTCGAGGAGCGAACAATTATTGTCCAAGAAGGTTTGCACATAAACACAGACGATCTGTAATAA---AAAC-----------AAACCACCACAGTTATAAATA------TC---CCACCAGTA---ACGATGTATC-CAGTATCCATCCC-AC-------GA-A----CTACTCAA----CTACAAT--CTAATTAATATTA---------------A----AA-A-------------TAATAGAC------------------AGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-AATGTCAAGTCAAAC------AAAACCAATCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................CCAAGAAGGTTTGCACATAAACA...................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................ACCAGTA---ACGATGTATC-CAGTATCC.................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
............................................ATTGTCCAAGAAGGTTTGCAC..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................TAATAGAC------------------AGC---AAAAACAATAATA-.....................................................................	24	1	1.00	1	0	0	0	0	0	1
..........................................TTATTGTCCAAGAAGGTTTGCACA.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...............AGGAAACATTTGTCGAGGAGCGAAC...................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
........................TTGTCGAGGAGCGAACAATTATTGTCC........................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..............GAGGAAACATTTGTCGAGGAGC.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
........................................AATTATTGTCCAAGAAGGTTT..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.............................................TTGTCCAAGAAGGTTTGCACAT........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
........................................................................CAGACGATCTGTAATAA---AAAC-----------AAACC...........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
.....................................................GAAGGTTTGCACATAAACACAGACGATC..........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................AGTA---ACGATGTATC-CAGTAT...................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..........................................TTATTGTCCAAGAAGGTTTGCA...........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1

droBip1

T------C--GCCAGAGGAAACATTTGTCGAGGAGCGAACAATAATTGTCCAAGAAGGTTTGCACATAAACACAGACGATCTGTAATAA---AAAC-----------AAACCACCACAGTTCTAAATA------TC---CCACCAGTA---ACGATGTATC-CAGTATCCATCCC-AC-------GA-A----CTACTCAA----CTACAAT--CTAATTAATATTA---------------A----AA-A-------------GAATAGAC------------------AGC---AAAAACAATAATA-AATATTGTCTTTACA--AATATAACAATTAAA---T-AATGTCAAGTCAAAC------AAAACCAATCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TAACCCTCGTG-CAGAGGAAACTTTTATTGAGGAACGAACGATAATCGTTGAAGAAGGTTTGAACATAAACACAGATGATCTGTAAAAC---AAACAAACAAAAAAAAAACCAC--AAAATATATATAACGAAATCCTACCACCAGTA---ACGATGTATACCACCAA----C-----CAACCACGATCCCACCATATGAA----CTACAGT--CTCAAAAATATTAATATTTATGAC---------------------------------------------------ATTG---AAAAACAA--------AATAATTTACAAA--AATATAACAATTAAA---A-AA---AAAGAGAAAC---AAACAAAAAAATCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................ATTGAGGAACGAACGATAAT.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................AACCACGATCCCACCATATGAA----CTACA.........................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................AGATGATCTGTAAAAC---AAACAA.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
............................................ATCGTTGAAGAAGGTTTG.............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................AGTA---ACGATGTATACCACCAA----C-----CAACC....................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................TACCACCAGTA---ACGATGTATACC........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............................................TCGTTGAAGAAGGTTTGAAC..........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................AGATGATCTGTAAAAC---AAA............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0

droPer2

TAACCCTCGTG-CAGAGGAAACTTTTATTGAGGAACGAACGATAATCGTTGAAGAAGGTTTGAACATAAACACAGATGATCTGTAAAAC---AAACAAACAA--AAAAAACCAC--AAAATATATATAACGAAATCCTACCACCAGTA---ACGATGTATACCACCAA----C-----CAACCACGATCCCACCATATGAA----CTACAGT--CTCAAAAATATTAATATTTATGAC---------------------------------------------------ATTG---AAAAACAA--------AATAATTTACAAA--AATATAACAATTAAA---A-AA---AAAGAGAAAC---AAACAAAAAAATCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................AA---AAAGAGAAAC---AAACAAA.......	19	1	1.00	1	0	1	0	0	0	0
...............................................GTTGAAGAAGGTTTGAACA.........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................GTAAAAC---AAACAAACAA--AA.................................................................................................................................................................................................................................................................................	19	5	0.40	2	2	0	0	0	0	0

droWil2

A------C--G-TAGAGGAAACATTTGTCGAGGAACGCACAATAGTTGTCCATGAAGGTTTGAACATAAACACAGATGAACTGTAAAAC---AAATAAATAA-----------AC------------------------------------AAAATGTA--CCA----CCATCCC-AC-------GAAA----CTACTCAACTTACTACAGT--CTTATTAATATTATTT--------------------------------------------------------------------AAACAATAATAAAATATTGTCTTTAAA--AATATAACAATTAAAAATTTTTTGTTGAACCAAAAGCCG--AAAAAAAATCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................AGATGAACTGTAAAAC---AAATA..........................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0
.................................................................................................................................................................................................CTACTCAACTTACTACAGT--CTTAT................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
......................ATTTGTCGAGGAACGCACAATAGTTGTC.........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
........................................................................CAGATGAACTGTAAAAC---A..............................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.......................................CAATAGTTGTCCATGAAGGTTTGAACAT........................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................ATTAAAAATTTTTTGTTGAACC.....................	22	1	1.00	1	1	0	0	0	0
..........................................................................GATGAACTGTAAAAC---AAATA..........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
......................................................................CACAGATGAACTGTAAAAC---A..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0

droVir3

A-----AC--G-TAGAGGAAACTTTTGTCGAGGAACGCACGATAGTAGTCCATGAAGGTTTGAACATAAACACAGATGAACTGTAAA----------------------TCCAC--------AATAAT------AC---CTACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----CTACTCAA----CTACAGTTACTACATAATATTATTACATA--------A----AA-A-----------------A---------------ACCAAAAAC-----AAACAATAATA-GATATTGACTTTTAA--AATATAACAATTAAA---T-TTTGTTAAACCAA-----------ACGAATCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................TATAACAATTAAA---T-TTTGTTAAACC.....................	25	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----CT........................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...................................................................................................................................................................................................ACTCAA----CTACAGTTACTACA................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................ATAAT------AC---CTACCAGTA---CTGATGTA------------TCC.............................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TAGAGGAAACTTTTGTCG.............................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AATA-GATATTGACTTTTA.......................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................AACTGTAAA----------------------TCCAC--------AATAAT------AC---CTACC...........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................TAGTAGTCCATGAAGGTTTGAACA.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................ACACAGATGAACTGTAAA----------------------..............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TAAACACAGATGAACTGTAAA----------------------TC............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AACACAGATGAACTGTAAA----------------------..............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TGAAGGTTTGAACATAAACACAGATGA............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GCACGATAGTAGTCCATGAAGGTTTGAACATAA......................................................................................................................................................................................................................................................................................................................	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACTTTTAA--AATATAACAATTAAA---T-TT..............................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ACGATAGTAGTCCATGAAGGTTTGAAC..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................TGAACTGTAAA----------------------TCCAC--------AATAAT------AC---C...............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................AT------AC---CTACCAGTA---CTGATGTA------------TCCC............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATTACATA--------A----AA-A-----------------A---------------ACCAAAAAC-----.................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................A-A----CTACTCAA----CTACAGTTACT...................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................AAAAC-----AAACAATAATA-GATATTGACT...........................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TAAA---T-TTTGTTAAACCAA-----------........	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................ACGATAGTAGTCCATGAAGGTTTGAACATA.......................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................A------------TCCCAAT-------GA-A----CTACTCAA----CTACA.........................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TAAACACAGATGAACTGTAAA----------------------TCCAC--------A................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAAT-------GA-A----CTACTCAA----CTAC..........................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----C.........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................AGTA---CTGATGTA------------TCCCAAT-------GA-A----CTA.......................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GAGGAACGCACGATAGTAGTCCA.......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AACAATTAAA---T-TTTGTTAAACC.....................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TA------------TCCCAAT-------GA-A----CTACTCAA----CT............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TGTCGAGGAACGCACGATA...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTTGTCGAGGAACGCACGATAGTAGTCC........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................AGTAGTCCATGAAGGTTTGAACATAAACA...................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................CGATAGTAGTCCATGAAGGTTTGAA...........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ACAATAATA-GATATTGACTT..........................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................AGTA---CTGATGTA------------TCCCAAT-------GA-A----CT........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AATATAACAATTAAA---T-TTTGT...........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TACCAGTA---CTGATGTA------------TC..............................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TACAGTTACTACATAATATTATTACATA--------.........................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CAGTA---CTGATGTA------------TCCCAAT-------GA-A----CTACT.....................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................ATA-GATATTGACTTTTAA--AATA................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................A---CTGATGTA------------TCCCAAT-------GA-A----C.........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................ATAAT------AC---CTACCAGTA---CTGATGTA------------T...............................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----CTA.......................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AAT-------GA-A----CTACTCAA----CTACA.........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................CACAGATGAACTGTAAA----------------------TCCAC--------A................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGGAACGCACGATAGTAGTCCA.......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................TACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----CTACTC....................................................................................................................................................................................	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................AGTA---CTGATGTA------------TCCCAAT-------GA-A----C.........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AACACAGATGAACTGTAAA----------------------TCCAC--------A................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGAACTGTAAA----------------------TCCAC--------A................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AAC-----AAACAATAATA-GATATTGACT...........................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TTGAACATAAACACAGATGAACT.........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T-----AC--G-TAGAGGAAACATTTGTCGAGGAACGCACGATAGTTGTCGATGAAGGTTTGAACATAAACACAGATGAACTGTAAAG---------------------TCCAC-------AAATAAT------AC---CTACCAGTA---CTGATGTA------------TCCCAAT-------GA-A----CTACTCAA----CTA--GTTACTACATCAATTTATGA-------CACTGAAAACAA-A-------------AAACATA-------------TTCAAAAAC-----AAACAATAATC-GATATTGACTTTTCAAATATATAACAATTAAA---T-TTTGTTAAACCAA-----------ACGAATCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................CACAGATGAACTGTAAAG---------------------TCCAC-------A.................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................................GCACGATAGTTGTCGATGAAGGT................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................C---CTACCAGTA---CTGATGTA------------TCCC............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................CGCACGATAGTTGTCGATGAAGGT................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
............................................GTTGTCGATGAAGGTTTGAAC..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................ATATAACAATTAAA---T-TTTGTTAAACC.....................	26	1	1.00	1	1	0	0	0	0	0

droGri2

A-----AC--G-TAGAGGAAACATTTGTCGAGGAACGCACGATAGTTGTCGATGAAGGTTTGAACTTAAACACAGATGAACTGTAAAT----------------------CCA--------AAATAAT------AC---CTACCAGTA---ATGATGTC---------CC---CCAATCAA----CA-A----CTACTCAA----CTACAGTTACAACATAATATTATTT------------A----AA-AAAAAAAAAAAAAAAAATTAAATGCAGACACAAATACAAATAC-----AATTAATAATT-GATATTGACTCTTTA--AATATAACAATTAAA---C-TTTGTTAAATCAAA-----------CGAATCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................CACGATAGTTGTCGATGAAGGTTTG.............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0

dsi_17041

3l:1979330-1979479 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.6	-6.3	-6.3