ID:

dsi_16956

Coordinate:

3l:15676444-15676593 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_15676353_15676443_+]; CDS [3l_15676353_15676443_+]; intron [3l_15676444_15678137_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCCAACGACGTCATTTTGCGGCGCACGCAAAGCTTTGAGAACGATCAAAAGTGAGTTGAATCCCAAGAAATTAAACATTGCGTGCCGCTCACACACAAACACCCAATCGCATCTCAGATTAACCCACATAAACAATGATTATGTACTACAACGATCGGCCAAATTGCACCGAAAGGTCTTGATTTGATTTATTGGTTGATTTTTGCAGTTCGCTTTTCACTTTTGCCGATTGCATTTGCTTATCATAATC ************************************************((((((...((..(((...........))).))...)))))).......((.(((((......(((((((((((.((((((.......))))))..........((((..........))))..)))..))))))))...))))).))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries
..CAACGACGTCATTTTGCGGC....................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................TGTTTCCTTGGTTGATTTTTGCA...........................................	23	3	2	0.50	1	0	1	0	0	0	0	0
................................................................................................................................................................AAATTGCAGCGAAAGATCT.......................................................................	19	2	6	0.17	1	0	0	1	0	0	0	0
...........................................................................................................................................................................AAAGGGCTTGGTTTGATT.............................................................	18	2	9	0.11	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................ATTGCATTTGGATATCAT....	18	2	15	0.07	1	0	0	0	0	0	1	0
.....................................AGAATGATCAAAAGT......................................................................................................................................................................................................	15	1	18	0.06	1	0	0	0	0	1	0	0
.....................................AGAACGATCATAAGTC.....................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................TTAATTTATTGGTTGA...................................................	16	1	20	0.05	1	0	0	0	0	0	0	1

Anti-sense strand reads

CGGTTGCTGCAGTAAAACGCCGCGTGCGTTTCGAAACTCTTGCTAGTTTTCACTCAACTTAGGGTTCTTTAATTTGTAACGCACGGCGAGTGTGTGTTTGTGGGTTAGCGTAGAGTCTAATTGGGTGTATTTGTTACTAATACATGATGTTGCTAGCCGGTTTAACGTGGCTTTCCAGAACTAAACTAAATAACCAACTAAAAACGTCAAGCGAAAAGTGAAAACGGCTAACGTAAACGAATAGTATTAG ************************************************((((((...((..(((...........))).))...)))))).......((.(((((......(((((((((((.((((((.......))))))..........((((..........))))..)))..))))))))...))))).))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries
.....................................................................................................................................................................................................................AAAAGTGAACAAGGCTTACGT................	21	3	4	0.25	1	1	0	0	0	0
.................................................................................................................AGTCTAATTGGGCGT..........................................................................................................................	15	1	7	0.14	1	0	1	0	0	0
.............................................................GGGTTCTTTAGTGTGTAA...........................................................................................................................................................................	18	2	14	0.07	1	0	0	1	0	0
.................................................................................CCCGGAGAGTGTGTGTT........................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1
...................................................................................................................................................GGTTACTAGGCGGTTTAAC....................................................................................	19	3	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................AGTCAAAACGGCTAA...................	15	1	20	0.05	1	1	0	0	0	0

Generated: 04/23/2015 at 05:11 PM