ID:

dsi_16946

 Coordinate:

2r:6760260-6760409 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.5 -0.3 -0.3

Flybase annnotation

exon [2r_6760410_6760541_+]; five_prime_UTR [2r_6760410_6760541_+]; intron [2r_6760010_6760409_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTAAATTTGAATTTAAATTTAATGGTTGGTGTCACTGCTAAGCGTCTTGCTTGAGTCAATGCTGCCCATATTGTTAAAGCATATCATTTAAAGACCAATATCGATAGCAACATCAAGTACTAATCGACATTTGTACCACCGCTGGCAGTCACTCTGAAAACAACCTTGCGCGTAATAAATATTTTCGTTGAATTTGAAGGCGAAAAAAAATAAAAATCAAACGATTCGTTGGCCGATAAAACCGGTGATT
****************************************************************************************************************************************************............(((..((..(((.((........)))))..)).)))..**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M053
female body
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................................................................................TCACTCTGAAAACAACCT.................................................................................... 18 0 1 29.00 29 28 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................CACTCTGAAAACAACCTTGC................................................................................. 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTCACTCTGAAAACAACCTTGCGCG.............................................................................. 25 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CACTCTGAAAACAACCTTGCGCG.............................................................................. 23 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACTCTGAAAACAACCTTGCGCG.............................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTCACTCTGAAAACAACCT.................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CACTCTGAAAACAACCTTGCG................................................................................ 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................AGTCACTCTGAAAACAACCT.................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TAATAAATATTTTCGTTGAATTTGGA.................................................... 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................GCAGTCACTCTGAAAACAACCTTGC................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTCGTTGAATTTGAAGGCG................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TCACTCTGAAAACAACCTTGCGCG.............................................................................. 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................GCAGTCACTCTGAAAACAACCT.................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCAAACGATTCGTTGGCC................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TCACTCTGAAAACAACCTTG.................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TCACTCTGAAAACAACCC.................................................................................... 18 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AATCAAACGATTCGTTGGCCGAT............. 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................ACTCTGAAAACAACCTTGCGC............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CAGTCACTCTGAAAACAACCG.................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTGAAAACAACCTTGCGCGTAATAAA....................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATATTTTCGTTGAATTTGAA.................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACGATTCGTTGGCCGATA............ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TAAAAATCAAACGATTCGTTGGCCGAT............. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................GTTGAATTTGATTGCGAAAAAAAA........................................ 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TCTGAAAACAACCTTGCGC............................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGATTCGTTGGCCGATAAAACC....... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCGTTGAATTTGAAGGCG................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCTGAAAACAACCTTGCGCG.............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................CACCGCTGGCAGTCACCC................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGTCACTCTGAAAACAACCTTGCGCG.............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATCAAACGATTCGTTGGCCGA.............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTGAAAACAACCTTGCGCGT............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AATATTTTCGTTGAATTTGAAGGCGAA.............................................. 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................AAAAATCAAACGATTCGTTGGCC................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATCAAACGATTCGTTGGCC................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATATTTTCGTTGAATTTGAAGGC................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TCACTCTGAAAACAACCTTGC................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AATAAAAATCAAACGATTCGTTGGCCGA.............. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................ACCGCTGGCAGTCACTCTGAAAACAACCT.................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................ACCGCTGGCAGTCAC.................................................................................................. 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................CACTCTGAAAACAACCTTGCGC............................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAAATATTTTCGTTGAATTATAAGGC................................................. 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................ACCGCTGGCAGTCACTCTGAAAA.......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CGATAAAACGGGTGA.. 15 1 14 0.29 4 0 0 0 4 0 0 0 0 0 0 0
......................................TAAGCGTATAGCTTGCGTC................................................................................................................................................................................................. 19 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................AACCTTGCGCGGAAT.......................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TAGGAGAAAAAAAATAAAAAT................................. 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................GTAGACGATAAAACCGGTGA.. 20 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................ATAGGAACATCACGTATTA................................................................................................................................ 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
.........................TTGGTGTTACTGCGAAG................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................CAGTGACTCTGAAACCA........................................................................................ 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................TCGGACGATAAAACGGGTGA.. 20 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
..........................TGCTGTCACTGCTGAGC............................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TAGACGATAAAACCGG..... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AATTTAAACTTAAATTTAAATTACCAACCACAGTGACGATTCGCAGAACGAACTCAGTTACGACGGGTATAACAATTTCGTATAGTAAATTTCTGGTTATAGCTATCGTTGTAGTTCATGATTAGCTGTAAACATGGTGGCGACCGTCAGTGAGACTTTTGTTGGAACGCGCATTATTTATAAAAGCAACTTAAACTTCCGCTTTTTTTTATTTTTAGTTTGCTAAGCAACCGGCTATTTTGGCCACTAA
****************************************************............(((..((..(((.((........)))))..)).)))..**************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 O002
Head
 M024
male body		 SRR618934
dsim w501 ovaries
..........................................................................................................................................GGCGACCGTCAGTGAGACTTTTGT........................................................................................ 24 0 1 1.00 1 1 0 0 0
................................................................................................................................TAAACATGGTGGCGACCGTCA..................................................................................................... 21 0 1 1.00 1 0 1 0 0
.........................................CCCAGAACGAACTCAGTTACGACGGGT...................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................TTTTGCTAAGCAACGGGC............... 18 2 5 0.20 1 0 0 1 0
..........................................................................................................................................................................................................TTTTTTTTATTTTTAG................................ 16 0 11 0.09 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:6760210-6760459 + dsi_16946 TTAAA----------------------TTTGAATTTAAATTT-----------------AATGG-TTGGTGTCACTGCTAAGCGTCTTGCTTGAGTCAATGCTGCCCATA-TTGTTA-AAGC-------------A------------------TATCATTTAAAGACCAATATCGATAGCA--ACATCAA------------------GTA-CTA--ATCGACATTT-GTACCACCGCT-------GGCAGTCACTCTGAAAACA---ACCTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTTGAATTTGAAGGCGAAAAAA--AA-----TAAAAA--TCAAACGATTCGTTGGCC-GATA-------AAACCGGTGATT
droSec2 scaffold_1:3599991-3600173 + ATATTGTT------------------------------------------------------------------------------------------------------------A-AAAC-------------A------------------TATCATTTAAAGACCAATATCGATAGGA--ACACCGA------------------GTA-CTA--ATCGACACTT-GTACCACCGCT-------AACAGTCACTCTGAAAACA---ACCTTTC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAATTTGAAGGCGAAAAAA--AA-----TAAAAA--TCAAACGATTCGTTGGCC-GATA-------AAACCGGTGATT
dm3 chr2R:5984304-5984560 + TTGTA----------------------TTTTA--TTAACTTA----GCTACC----GGTAATGG-TTTGTGTCACTGCTAAGCTTCTTGCTTGAGTCAATGCTGCCCATT---GTTT-AAAC-------------A------------------TCGCATTTAAAGACCAGTATCGATAGCA--ATATCGA------------------ATAAATA--ATCGACACTT-GTACCACCGCT-------AGCACTCATTCTGAAAACA---ACCTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAAATTATTTAGCGAAACC-AAAA-----TAAAAA--TCAAACGATTCGTTGGCC-GATA-------AAACCGGTGATT
droEre2 scaffold_4929:8386561-8386799 - TTAAA----------------------TTTGAATTTAACT------------------------------------GCTTCGCGAAGTGCTTCAGCCAATGCTACCCATG-CTGTTACAAAC-------------A------------------TCGCTTTCCTTCTCCGCTATCGATAGCA--ATGTCGA------------------ATA-ATA--ATTGACATTT-GTATCACCTCT-------AGCAGCCACTCTGAAAACA---ACCTCAC-GCGTAATAAATATAAATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTAAATATATTAAGCGAAAGAA--AA-----ATAAAA--TTAAAAGATTAGGTGACC-GATA-------AGACCAGTGAAT
droYak3 2L:18617195-18617458 + TTAGA----------------------TTTGAATTTAAATTAAAGTGCTGCC----TGGACTGG-TTTGAGTCCCCGCTACCC-ACTTGATTTAGTCAATGCTACCCATT---GTTTTAAAT-------------A------------------ATGCTCTCCACGTTCAGTGTCGATAGCA--ATGTCGA------------------ATA-ATC--ATCGACATTT-GTACCAGCTCT-------AGCAGCCACTCTGAAAACA---ACCTTAC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAATTTATTAAGCGGAAAAAAAAA-----CAAAAAT-TCAAAAGATTAGGTGCCC-GATA-------AAACCGGTGATT
droEug1 scf7180000409209:196687-196973 - TTAATATTCATAACTGACGG-----TATTTGAATTTAAATTT--------------TAAACAAGTTTGGAGTCAATGAT-------------GTGGCAATGCTGCCCATG-TTA---------------GCAAATACACCCTCCTATTTAG---TCGAGTAACATCCAAGCTATCGATTATA--AT-TCAAAAACTGATAACATTACAAGAC-CCC--ATCGAT-TTT-GTTTCATCTCT-------AACAGCCACTCTGAAAACA---ACCTTAC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAAAAATAAAC--AGTGAAAAAT--CA--ATTTAAAA-----AAGCAACTAAATAACCAGAAA-------AAACCGGTGACT
droBia1 scf7180000301754:350808-351082 - ATACA----------------------TTTGAATTTGAATGTTAGTGCTGCCCAT-TGTAAAGG-TTTGCGTCTGTGCTAGACA--TTCCAAGGCACAATGCTGCCCATA---------AACACGACAAGCAAGGACAGGAACC-------A------------ATACATATATCGATGGGCAGACATCAT------------------ATAACTA--TTGCACACTT-TGCACATCTCTAT---CTAACAG-CACTGTGAAAACAACAACCTTGC-TCGTAA-AAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAATAAATTAAGCGCATTTA--AGCAACCC-AAAA--CCA-----GTGAGTGCCC-GTTT-------TAACCGACGA-T
droTak1 scf7180000415363:249664-249934 - TTTTTATTGG-------CGGCCAAACATTTGAATTCAAATTTGCGTGCTGCCAATTTGAAATGG-TTTGAGCCCATGATAT-------------GCCAATGCTGCCCATAACTA---------------CCATGGACATCCTCC-------ACT---ATCGATATTGAATATATCGATATGCTTACA---------------------------CATTTTACATATTT-TTCACATCTTTAT---ATTGCAGCCATTCTGAACACAACAACTTTGC-GCGTAATAAA------TATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAGTAAAC-----GGAGGC-CTCT-----TGAAAA--CCAG-----TAAGCTTGC-GATA-------AACACGGTCATT
droEle1 scf7180000491214:93555-93683 - ATCGA----------------------TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-TCCAGCTCTATCGAATTGCAGCCACTCTAAAAAAAACAAC--TGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAATAAACCAAAT----AA-A---TCACGC-AAAATTCCA-----GTC-GTGACA-GATT-------AAACAAGAGATT
droRho1 scf7180000777200:176196-176338 + ACACCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-CCA--ATCGATTG-ATG-TCCACCGCAAATAAAAAGCAGCCACTCTAAAAACA---AC--TGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAAATAAACTAAGCCAAGTAA--GG-----CAAACA--CCAAGCGG--AAGTGACA-GATT-------AAACAAGAGATT
droFic1 scf7180000453948:555084-555189 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGTTAAAAACAACTAC--TACAACGTCAGAAA------TATTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT--CTAAGCGCAGAC-AAAA-----AATAAAT-CCAAAAAC-----TTTCT-GTTAAACACAGAGATTAGTGGTT
droAna3 scaffold_13266:6042744-6043014 - TCAAAACTAA-------TG--------------CTTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------TGTGTTTATTTTTATTATGGAGCTTTTTAAGTTGAAAAAGCGTTAGATTTTGGAAACCGGAGGTTTTTCTATAAAACGGCTAAAAATAGCCATTAAACAGCTAAACAGCCCGCGCTAATAGTGAGCTTTAACACTTTCCAACACTGACAAGTACAATCGCAAGCAAAACAATTTGCGCTGCAAGTTTATTTATAAATAAACTCGAAA---AT-A---TTGTTTAAAAA--CCAAAAAGTG---CCTCC-ATTA-------AGAATTAAAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTAAA----------------------TTTGAATTTAAATTT-----------------AATGG-TTGGTGTCACTGCTAAGCGTCTTGCTTGAGTCAATGCTGCCCATA-TTGTTA-AAGC-------------A------------------TATCATTTAAAGACCAATATCGATAGCA--ACATCAA------------------GTA-CTA--ATCGACATTT-GTACCACCGCT-------GGCAGTCACTCTGAAAACA---ACCTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTTGAATTTGAAGGCGAAAAAA--AA-----TAAAAA--TCAAACGATTCGTTGGCC-GATA-------AAACCGGTGATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................TCACTCTGAAAACA---ACCT....................................................................................................................................................................................................................................................................................................18129.0029281000000000000000
.............................................................................................................................................................................................................................................................CACTCTGAAAACA---ACCTTGC-................................................................................................................................................................................................................................................................................................2015.00550000000000000000
...........................................................................................................................................................................................................................................................GTCACTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2514.00430100000000000000
.............................................................................................................................................................................................................................................................CACTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2314.00440000000000000000
..............................................................................................................................................................................................................................................................ACTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2213.00330000000000000000
...........................................................................................................................................................................................................................................................GTCACTCTGAAAACA---ACCT....................................................................................................................................................................................................................................................................................................1913.00330000000000000000
.............................................................................................................................................................................................................................................................CACTCTGAAAACA---ACCTTGC-G...............................................................................................................................................................................................................................................................................................2113.00321000000000000000
..........................................................................................................................................................................................................................................................AGTCACTCTGAAAACA---ACCT....................................................................................................................................................................................................................................................................................................2013.00330000000000000000
........................................................................................................................................................................................................................................................GCAGTCACTCTGAAAACA---ACCTTGC-................................................................................................................................................................................................................................................................................................2512.00220000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAATTTGAAGGCG.................................................................1912.00200200000000000000
............................................................................................................................................................................................................................................................TCACTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2412.00211000000000000000
........................................................................................................................................................................................................................................................GCAGTCACTCTGAAAACA---ACCT....................................................................................................................................................................................................................................................................................................2212.00220000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGATTCGTTGGCC-.......................1812.00200200000000000000
............................................................................................................................................................................................................................................................TCACTCTGAAAACA---ACCTTG..................................................................................................................................................................................................................................................................................................2012.00220000000000000000
............................................................................................................................................................................................................................................................TCACTCTGAAAACA---ACCC....................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--TCAAACGATTCGTTGGCC-GAT....................2312.00200200000000000000
..............................................................................................................................................................................................................................................................ACTCTGAAAACA---ACCTTGC-GC..............................................................................................................................................................................................................................................................................................2111.00110000000000000000
.........................................................................................................................................................................................................................................................CAGTCACTCTGAAAACA---ACCG....................................................................................................................................................................................................................................................................................................2111.00110000000000000000
................................................................................................................................................................................................................................................................TCTGAAAACA---ACCTTGC-GCGTAATAAA------................................................................................................................................................................................................................................................................................2711.00110000000000000000
..............................................................................................................................................................................................................................................................................................A------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTTGAATTTGAA.....................................................................2011.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATTCGTTGGCC-GATA-------............1911.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA--TCAAACGATTCGTTGGCC-GAT....................2711.00100000000000001000
................................................................................................................................................................................................................................................................TCTGAAAACA---ACCTTGC-GC..............................................................................................................................................................................................................................................................................................1911.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCGTTGGCC-GATA-------AAACC.......2211.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAATTTGAAGGCG.................................................................1811.00110000000000000000
...............................................................................................................................................................................................................................................................CTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2111.00100100000000000000
..........................................................................................................................................................................................................................................................AGTCACTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2611.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCAAACGATTCGTTGGCC-GA.....................2111.00110000000000000000
................................................................................................................................................................................................................................................................TCTGAAAACA---ACCTTGC-GCGT............................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................................................AA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTTGAATTTGAAGGCGAA...............................................................2711.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA--TCAAACGATTCGTTGGCC-.......................2311.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCAAACGATTCGTTGGCC-.......................1911.00110000000000000000
..............................................................................................................................................................................................................................................................................................A------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTTGAATTTGAAGGC..................................................................2311.00110000000000000000
............................................................................................................................................................................................................................................................TCACTCTGAAAACA---ACCTTGC-................................................................................................................................................................................................................................................................................................2111.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TAAAAA--TCAAACGATTCGTTGGCC-GA.....................2811.00100000000000001000
..........................................................................................................................................................................................................................................ACCGCT-------GGCAGTCACTCTGAAAACA---ACCT....................................................................................................................................................................................................................................................................................................2911.00110000000000000000
..........................................................................................................................................................................................................................................ACCGCT-------GGCAGTCAC.....................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
.............................................................................................................................................................................................................................................................CACTCTGAAAACA---ACCTTGC-GC..............................................................................................................................................................................................................................................................................................2211.00110000000000000000
..........................................................................................................................................................................................................................................ACCGCT-------GGCAGTCACTCTGAAAA.............................................................................................................................................................................................................................................................................................................2311.00110000000000000000
droSec2
ATATTGTT------------------------------------------------------------------------------------------------------------A-AAAC-------------A------------------TATCATTTAAAGACCAATATCGATAGGA--ACACCGA------------------GTA-CTA--ATCGACACTT-GTACCACCGCT-------AACAGTCACTCTGAAAACA---ACCTTTC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAATTTGAAGGCGAAAAAA--AA-----TAAAAA--TCAAACGATTCGTTGGCC-GATA-------AAACCGGTGATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................CACTCTGAAAACA---ACCTTTC-GCG.............................................................................................................................................................................................................................................................................................2311.0010001
.............................................................................................................................................................................................................................................................CACTCTGAAAACA---ACCTTTC-G...............................................................................................................................................................................................................................................................................................2111.0010001
.............................................................................................................................................................................................................................................................................................AA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAATTTGAAGGCGA................................................................2611.0011000
.....................................................................................................................................................................................................................................................................................................TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAATTTGAA.....................................................................1911.0011000
........................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTGGAATTTGAAGGC..................................................................1911.0010010
...........................................................................................................................................................................................................................................................GTCACTCTGAAAACA---ACCTTTC-GCGT............................................................................................................................................................................................................................................................................................2611.0010001
dm3
TTGTA----------------------TTTTA--TTAACTTA----GCTACC----GGTAATGG-TTTGTGTCACTGCTAAGCTTCTTGCTTGAGTCAATGCTGCCCATT---GTTT-AAAC-------------A------------------TCGCATTTAAAGACCAGTATCGATAGCA--ATATCGA------------------ATAAATA--ATCGACACTT-GTACCACCGCT-------AGCACTCATTCTGAAAACA---ACCTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAAATTATTTAGCGAAACC-AAAA-----TAAAAA--TCAAACGATTCGTTGGCC-GATA-------AAACCGGTGATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................ATTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................22122.00220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000000000000010000000000000000000011000000000000000100000000001200000000000011001211100000001001110
........................................................................................................................................................................................................................................................................CA---ACCTTGC-GCGTAATAA.......................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CCTTGC-GCGTAATAAA------TA..............................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATTCTGAAAACA---ACCTTGC-GCGTAAT.........................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA--TCAAACGATTCGTTGGCC-GAT....................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATTCTGAAAACA---ACCTTGC-GCGTAATA........................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATTCTGAAAACA---ACCTTGC-GCGT............................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA--TCAAACGATTCGTTGGCC-GA.....................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................GTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAA............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGATTCGTTGGCC-GATA-------AAACCG......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATTATTTAGCGAAACC-...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ACCTTGC-GCGTAATAAA------T...............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................C-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCG................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................ACTCATTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................................................................................................................................................................................................................................................................TTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T...................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTCGTTGGCC-GATA-------AAACCGG.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--TCAAACGATTCGTTGGCC-GATA-------A...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................CCAGTATCGATAGCA--ATATCG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATTTAGCGAAACC-A..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCGTTGGCC-GATA-------AAA.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GTACCACCGCT-------AGCACTCAT.....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA--TCAAACGATTCGTTGGCC-GAAT-------C...........2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CACCGCT-------AGCACTCATTCTGA................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ACCTTGC-GCGTAATAAA------TA..............................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATTCGTTGGCC-GATA-------AAACCGGTG...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................A--ATCGACACTT-GTACCACCG.......................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................CCTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCAAACGATTCGTTGGCC-GATA-------AAACC.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGATTCGTTGGCC-GATA-------AAACC.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AATA--ATCGACACTT-GTACCACCG.......................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA--TCAAACGATTCGTTGG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAAATTATTTA....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----TAAAAA--TCAAACGATTCGTTGG..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................GC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCG................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................CTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTA..............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ACCTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCG................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................CCTTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT..................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAAATTATTTAGCGAAA..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CTCATTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA--TCAAACGATTCGTTGGCC-GAT....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CCGCT-------AGCACTCATTCTGAAAA.............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGATTCGTTGGCC-G......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTCTGAAAACA---ACCTTGC-GCG.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTCGTTGGCC-GA.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGCGAAACC-AAAA-----TAAA..............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ATTCTGAAAACA---ACCTTGC-................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CTGAAAACA---ACCTTGC-GCGTAAT.........................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--TCAAACGATTCGTTGGCC-G......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACC-AAAA-----TAAAAA--TCAAACGAT.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CCACCGCT-------AGCACTCAGG....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCG................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA--TCAAACGATTCGTTGGCC-.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGAAAACA---ACCTTGC-GCGTAAT.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--TCAAACGATTCGTTGG..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................ACTCATTCTGAAAACA---ACCT....................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAACGATTCGTTGGCC-GATA-------AAAC........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GAAAACA---ACCTTGC-GCGTAATAAA------T...............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT..................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................T-AAAC-------------A------------------TCGCATTTAAAGCGA............................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----TAAAAA--TCAAACGTG.................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAAA----------------------TTTGAATTTAACT------------------------------------GCTTCGCGAAGTGCTTCAGCCAATGCTACCCATG-CTGTTACAAAC-------------A------------------TCGCTTTCCTTCTCCGCTATCGATAGCA--ATGTCGA------------------ATA-ATA--ATTGACATTT-GTATCACCTCT-------AGCAGCCACTCTGAAAACA---ACCTCAC-GCGTAATAAATATAAATATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTAAATATATTAAGCGAAAGAA--AA-----ATAAAA--TTAAAAGATTAGGTGACC-GATA-------AGACCAGTGAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................CTGAAAACA---ACCTCAC-GCGTA...........................................................................................................................................................................................................................................................................................2111.0011000000
...............................................................................................................................................................................................................................................................CTCTGAAAACA---ACCTCAC-G...............................................................................................................................................................................................................................................................................................1911.0010100000
.................................................................................................................................................................................................................................................................CTGAAAACA---ACCTCAC-GCGTAATAAAT.....................................................................................................................................................................................................................................................................................2711.0010000100
droYak3
TTAGA----------------------TTTGAATTTAAATTAAAGTGCTGCC----TGGACTGG-TTTGAGTCCCCGCTACCC-ACTTGATTTAGTCAATGCTACCCATT---GTTTTAAAT-------------A------------------ATGCTCTCCACGTTCAGTGTCGATAGCA--ATGTCGA------------------ATA-ATC--ATCGACATTT-GTACCAGCTCT-------AGCAGCCACTCTGAAAACA---ACCTTAC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAATTTATTAAGCGGAAAAAAAAA-----CAAAAAT-TCAAAAGATTAGGTGCCC-GATA-------AAACCGGTGATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................A------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAATTTATT......................................................................1911.00101000000000
.............................................................................................................................................................................................................................................................CACTCTGAAAACA---ACCTTA..................................................................................................................................................................................................................................................................................................1911.00110000000000
.............................................................................................................................................................................................................................................................................................AA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGTAAATTTATTAAGCGGA...............................................................2711.00100000010000
..............................................................................................................................................................................................................................................CT-------AGCAGCCACTCTGAAAACA---ACCTTAC-GC..............................................................................................................................................................................................................................................................................................3011.00100000010000
....................................................................................................................................................................................................................................................................AAAACA---ACCTTAC-GCGTAAT.........................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TCAAAAGATTAGGTGCCC-GAC....................2311.00100100000000
.....................................................................................................................................................................................................................................GTACCAGCTCT-------AGCAGCCACTCT..................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEug1
TTAATATTCATAACTGACGG-----TATTTGAATTTAAATTT--------------TAAACAAGTTTGGAGTCAATGAT-------------GTGGCAATGCTGCCCATG-TTA---------------GCAAATACACCCTCCTATTTAG---TCGAGTAACATCCAAGCTATCGATTATA--AT-TCAAAAACTGATAACATTACAAGAC-CCC--ATCGAT-TTT-GTTTCATCTCT-------AACAGCCACTCTGAAAACA---ACCTTAC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAAAAATAAAC--AGTGAAAAAT--CA--ATTTAAAA-----AAGCAACTAAATAACCAGAAA-------AAACCGGTGACTSizeHit CountTotal NormTotal
No Reads
droBia1
ATACA----------------------TTTGAATTTGAATGTTAGTGCTGCCCAT-TGTAAAGG-TTTGCGTCTGTGCTAGACA--TTCCAAGGCACAATGCTGCCCATA---------AACACGACAAGCAAGGACAGGAACC-------A------------ATACATATATCGATGGGCAGACATCAT------------------ATAACTA--TTGCACACTT-TGCACATCTCTAT---CTAACAG-CACTGTGAAAACAACAACCTTGC-TCGTAA-AAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAATAAATTAAGCGCATTTA--AGCAACCC-AAAA--CCA-----GTGAGTGCCC-GTTT-------TAACCGACGA-TSizeHit CountTotal NormTotal
No Reads
droTak1
TTTTTATTGG-------CGGCCAAACATTTGAATTCAAATTTGCGTGCTGCCAATTTGAAATGG-TTTGAGCCCATGATAT-------------GCCAATGCTGCCCATAACTA---------------CCATGGACATCCTCC-------ACT---ATCGATATTGAATATATCGATATGCTTACA---------------------------CATTTTACATATTT-TTCACATCTTTAT---ATTGCAGCCATTCTGAACACAACAACTTTGC-GCGTAATAAA------TATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAGTAAAC-----GGAGGC-CTCT-----TGAAAA--CCAG-----TAAGCTTGC-GATA-------AACACGGTCATTSizeHit CountTotal NormTotal
No Reads
droEle1
ATCGA----------------------TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG-TCCAGCTCTATCGAATTGCAGCCACTCTAAAAAAAACAAC--TGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAAATAAACCAAAT----AA-A---TCACGC-AAAATTCCA-----GTC-GTGACA-GATT-------AAACAAGAGATTSizeHit CountTotal NormTotal
No Reads
droRho1
ACACCAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA-CCA--ATCGATTG-ATG-TCCACCGCAAATAAAAAGCAGCCACTCTAAAAACA---AC--TGC-GCGTAATAAA------TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAAATAAACTAAGCCAAGTAA--GG-----CAAACA--CCAAGCGG--AAGTGACA-GATT-------AAACAAGAGATTSizeHit CountTotal NormTotal
No Reads
droFic1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGTTAAAAACAACTAC--TACAACGTCAGAAA------TATTTTTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT--CTAAGCGCAGAC-AAAA-----AATAAAT-CCAAAAAC-----TTTCT-GTTAAACACAGAGATTAGTGGTTSizeHit CountTotal NormTotal
No Reads
droAna3
TCAAAACTAA-------TG--------------CTTAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------TGTGTTTATTTTTATTATGGAGCTTTTTAAGTTGAAAAAGCGTTAGATTTTGGAAACCGGAGGTTTTTCTATAAAACGGCTAAAAATAGCCATTAAACAGCTAAACAGCCCGCGCTAATAGTGAGCTTTAACACTTTCCAACACTGACAAGTACAATCGCAAGCAAAACAATTTGCGCTGCAAGTTTATTTATAAATAAACTCGAAA---AT-A---TTGTTTAAAAA--CCAAAAAGTG---CCTCC-ATTA-------AGAATTAAAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGACAAGTACAATCGCAAGC............................................................................................................2411.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAACACTGACAAGTACAAT...................................................................................................................2211.001001000

Generated: 05/19/2015 at 05:28 AM