ID:

dsi_16939

 Coordinate:

2l:22783688-22783837 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.1 -3.0 -2.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. dsi_16939  2l:22783743-22783771 +
  2. dsi_28304  2r:44889-44917 -
star
  1. dsi_16939  2l:22783779-22783805 +
  2. dsi_28304  2r:44855-44881 -

Sense Strand Reads

ACAGACAGAGGAAGCGTGTGCATATAAAGTATATATATTCTTGATCAGGATCAATAGCAGATTCTGGCTATGTCCGTCTGTCTATCCGTATGAACGTCGAGGTCTGAGGAACTTTAAAAGCTAGAAGATTAAGATTTACCATCTAGACATATAGAAGCAGAGCAAGTTTGTTAATTTATCTATTTAAATTCTACAAATAGGTTAGAGGCCAATCTTCGACGTTCGGAAGTCACAAACGCACGTGTCTGTT
*********************************************************************************************************......((((.....(((((................))))).......))))...........********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
 M053
female body
 GSM343915
embryo
 SRR902008
ovaries
............................GTATATATATTCTTGATCAGGATC...................................................................................................................................................................................................... 24 0 20 1.50 30 26 0 0 0 4 0 0 0 0 0 0
............................GTATATATATTCTTGATCAGGATCAAT................................................................................................................................................................................................... 27 0 20 1.50 30 25 5 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTCGACGTTCGGAAGTCACAAACGCACG........ 28 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AGGCCAATCTTCGACGTTCGG........................ 21 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................TTCTTGATCAGGATCAATAGC................................................................................................................................................................................................ 21 0 20 0.95 19 19 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGGAACTTTAAAAGCTAGAAGATTAAGA.................................................................................................................... 29 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................TGTCCGTCTGTCTATCCGTATGAACGA......................................................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................TGAGGAACTTTAAAAGCTAGAAGATTA....................................................................................................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................GAGGAACTTTAAAAGCTAGAAGATTAT...................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TGTCTATCCGTATGAACGTCGAGGTC.................................................................................................................................................. 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................CGAGGTCTGAGGAACTTTAAAAGC................................................................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...GACAGAGGAAGCGTG........................................................................................................................................................................................................................................ 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGAGGAACTTTAAAAGCTAGAAGATTAAGA.................................................................................................................... 30 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TCTAGACATATAGAAGCAGAGCAAGTT.................................................................................. 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................TCTGAGGAACTTTAAAAGCT................................................................................................................................ 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................GAGGAACTTTAAAAGCTAGAAGAT......................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................TATCCGTATGAACGTCGAGGTC.................................................................................................................................................. 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................TGAGGAACTTTAAAAGCTAGAAGATT........................................................................................................................ 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
............................GTATATATATTCTTGATCAGGATCA..................................................................................................................................................................................................... 25 0 20 0.40 8 0 0 0 3 5 0 0 0 0 0 0
........................TAAAGTATATATATTCTTGATCAGG......................................................................................................................................................................................................... 25 0 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0
.............................TATATATATTCTTGATCAGGATCAAT................................................................................................................................................................................................... 26 0 20 0.30 6 4 0 0 0 0 0 0 0 2 0 0
...GATAGAGGAAGCGTG........................................................................................................................................................................................................................................ 15 1 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................GAGGAACTTTAAAAGCTAGAAGGTT........................................................................................................................ 25 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.........................AAAGTATATATATTCTTGATCAGGA........................................................................................................................................................................................................ 25 0 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
..............................ATATATATTCTTGATCAGGAT....................................................................................................................................................................................................... 21 0 20 0.20 4 0 0 0 0 2 0 0 2 0 0 0
.......................................CTTGATCAGGATCAAT................................................................................................................................................................................................... 16 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAGGCCAATCTTCGACGTTCGGAAGT.................... 26 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
...............................TATATATTCTTGATCAGGATCAATAGC................................................................................................................................................................................................ 27 0 20 0.15 3 0 1 0 0 2 0 0 0 0 0 0
............................GTATATATATTCTTGATCAGGATCAATA.................................................................................................................................................................................................. 28 0 20 0.15 3 0 0 0 0 0 0 0 3 0 0 0
.............................................................................................................................................................................................................................TTCAGAAGTCACAAAAGCA.......... 19 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGGAACTATAAAAGCTAGAAGAT......................................................................................................................... 24 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................GTTCGGAAGTGATAACCGC........... 19 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................CTATCCGTATGAACGT......................................................................................................................................................... 16 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
................................ATATATTCTTGATCAGGATCAATAGC................................................................................................................................................................................................ 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..............................ATATATATTCTTGATCAGGATCAAT................................................................................................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 1 0 0 0 0 1
............................GTATATATATTCTTGA.............................................................................................................................................................................................................. 16 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AGGAACTTTAAAAGCTAGA............................................................................................................................. 19 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................ACTTTAAAAGCTAGAA............................................................................................................................ 16 0 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................TGGGCATATAGAGTATAT........................................................................................................................................................................................................................ 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0
........................................TTGATCGGGATCAATAGCAATT............................................................................................................................................................................................ 22 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
........................................TTGATCAGGATCAATAGC................................................................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..............................ATATATATTCTTGATCAGGATCAA.................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
............................GTATATGTATTCTTGATCAGGATCAA.................................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
.....................................TTCTTGATCAGGATCAATAG................................................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...............................TATATATTCTTGATCAGGATCAA.................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..................................GTATTCTTGATCAGGATCAATAGTA............................................................................................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
............................................................ATTCTGGCTACGTACTTCT........................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...............................TATATATTCTTGATCAGGATCAATA.................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................AGTAAGTTTGTTAATT.......................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTCTGTCTCCTTCGCACACGTATATTTCATATATATAAGAACTAGTCCTAGTTATCGTCTAAGACCGATACAGGCAGACAGATAGGCATACTTGCAGCTCCAGACTCCTTGAAATTTTCGATCTTCTAATTCTAAATGGTAGATCTGTATATCTTCGTCTCGTTCAAACAATTAAATAGATAAATTTAAGATGTTTATCCAATCTCCGGTTAGAAGCTGCAAGCCTTCAGTGTTTGCGTGCACAGACAA
**********************************************************************************......((((.....(((((................))))).......))))...........********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 M053
female body
..............................................................AGACCGATACAGGCAGACAGATAGGCAT................................................................................................................................................................ 28 0 2 18.50 37 32 0 3 2 0 0 0 0 0 0 0
...........................................................CTAAGACCGATACAGGCAGACAGAT...................................................................................................................................................................... 25 0 2 8.00 16 6 2 2 2 2 2 0 0 0 0 0
..................................................................CGATACAGGCAGACAGATAGGCAT................................................................................................................................................................ 24 0 2 4.00 8 8 0 0 0 0 0 0 0 0 0 0
..........................................................................................ACTTGCAGCTCCAGACTCCTTGAAA....................................................................................................................................... 25 0 2 3.50 7 0 3 1 1 2 0 0 0 0 0 0
..............................................................AGACCGATACAGGCAGACAGATAGGCA................................................................................................................................................................. 27 0 2 3.50 7 5 1 1 0 0 0 0 0 0 0 0
............................................AGTCCTAGTTATCGTCTAAGACCGAT.................................................................................................................................................................................... 26 0 2 3.00 6 3 0 1 1 1 0 0 0 0 0 0
..................................................................CGATACAGGCAGACAGATAGGCATAC.............................................................................................................................................................. 26 0 2 3.00 6 6 0 0 0 0 0 0 0 0 0 0
................................................................................AGATAGGCATACTTGCAGCTCCAGACT............................................................................................................................................... 27 0 2 3.00 6 4 0 1 1 0 0 0 0 0 0 0
.............................................................AAGACCGATACAGGCAGACAGATAGGC.................................................................................................................................................................. 27 0 2 2.50 5 1 4 0 0 0 0 0 0 0 0 0
.................................................................CCGATACAGGCAGACAGATAGGCAT................................................................................................................................................................ 25 0 2 2.50 5 2 1 0 0 2 0 0 0 0 0 0
................................................................ACCGATACAGGCAGACAGATAGGCAT................................................................................................................................................................ 26 0 2 2.50 5 3 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TTAAGATGTTTATCCAATCTCCGGT....................................... 25 0 2 1.50 3 0 0 0 3 0 0 0 0 0 0 0
..............................................................AGACCGATACAGGCAGACAGATAGGC.................................................................................................................................................................. 26 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
............................................................TAAGACCGATACAGGCAGACAGAT...................................................................................................................................................................... 24 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0
..................................................AGTTATCGTCTAAGACCGATACAGGCAG............................................................................................................................................................................ 28 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................AAGACCGATACAGGCAGACAGAT...................................................................................................................................................................... 23 0 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0
..................................................................................ATAGGCATACTTGCAGCTCCAGACT............................................................................................................................................... 25 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................AAGACCGATACAGGCAGACAGATAG.................................................................................................................................................................... 25 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0 0
.....................................................................TACAGGCAGACAGATAGGCATACTT............................................................................................................................................................ 25 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................GATAGGCATACTTGCAGCT...................................................................................................................................................... 19 0 8 0.75 6 0 0 0 0 0 0 6 0 0 0 0
.................................................................CCGATACAGGCAGACAGATAGGCAGAC.............................................................................................................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TACAGGCAGACAGATAGGCATACT............................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TACAGGCAGACAGATAGGCATACGT............................................................................................................................................................ 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................ACTAAGACCGATACAGGCAGACAGAT...................................................................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................AGACCGATACAGGCAGACAGATAA.................................................................................................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTAAATAGATAAATTTAAGATGTTTAT................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................AGTTATCGTCTAAGACCGATACAGGCA............................................................................................................................................................................. 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................CGATACAGGCAGACAGATAGGCATACTT............................................................................................................................................................ 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................ACAGGCAGACAGATAGGCATACTTGC.......................................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................AGACCGATACAGGCAGACAGATAGGTAT................................................................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGGTTAGAAGCTGCAAGCCTT...................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................TACTTGCAGCTCCAGACTCCTTGAAA....................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................CAGGCAGACAGATAGGCATACTT............................................................................................................................................................ 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................AGTTATCGTCTAAGACCGATACAGGC.............................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................AGTCCTAGTTATCGTCTAAGACCGATA................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................CGATACAGGCAGACAGATAGGCATA............................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
............................................................TAAGACCGATACAGGCAGACAGATAGGCA................................................................................................................................................................. 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................TGATAGGCATACTTGCAGCTCCAGACT............................................................................................................................................... 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................CTAAGACCGATACAGGCAGACAGATAGGCAT................................................................................................................................................................ 31 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTCGATCTTCTAATTC..................................................................................................................... 17 0 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
.......................................................................................................................................................ATCTGCGTCTCGTTCAAACAATTAA.......................................................................... 25 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................AGACCGATACAGGCAGAC.......................................................................................................................................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................AGATAGGCATACTTGCAGCTCCAGAGT............................................................................................................................................... 27 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCGGTTAGAAGCTACAAGCCTTCAGTG................. 27 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................CAGATCTTCGTCTCGTTC.................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................CTGTGTACCATCGTCTCGTT..................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................TTTTCCGGTTAGAAGCTACAAGC......................... 23 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................TTAGAAGCTACAAGCCTTCATTG................. 23 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
......................................AGAACTAGTGCTAGTTATCGTCTA............................................................................................................................................................................................ 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
......................................AGAACTAGTCCTAGTTATCGT............................................................................................................................................................................................... 21 0 17 0.12 2 2 0 0 0 0 0 0 0 0 0 0
...................CGCTGATTTCATATATATAAG.................................................................................................................................................................................................................. 21 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
..........................TTCATATATATAAGAACTAGTCCTA....................................................................................................................................................................................................... 25 0 20 0.10 2 1 0 0 0 0 0 0 1 0 0 0
......................................AGAACTAGTCCTAGTT.................................................................................................................................................................................................... 16 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
...........................TCATATATATAAGAACTAGTCCT........................................................................................................................................................................................................ 23 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
...................................................................................TAGGCATACTTGCAGCT...................................................................................................................................................... 17 0 16 0.06 1 0 0 0 0 0 0 0 1 0 0 0
......................ATATTTCATATATATAAGAACTAGTCCT........................................................................................................................................................................................................ 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................GATCTGGATCTCTTCG............................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................AGAACTAGGCCTAGTTATTGTCT............................................................................................................................................................................................. 23 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................ACCATCGTCTCGTTCAAAG................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
........................ATTTCATATATATAAGAACTAGTCGT........................................................................................................................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...........................TCATATATATAAGAACTAGTCCTAG...................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................CCAGGCTCCTCGAAAT...................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
..............................TATATATAAGAACTAGTCCT........................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
.....................................AAGAACTAGGCCTAGTTATTGTCT............................................................................................................................................................................................. 24 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:22783638-22783887 + dsi_16939 ACAGACAGA-GGAAGCGTGT----GCATATAAAGTATATATATTCTTGATCAGGATCAATAGCAGATTC----TGGCTATGTCC------------GTCTGT----CTATCC----GTAT-------------------------GAACGTCGAGGTCT-------------GAGGAACTTTA-----AAAG---CTAGAAGATTAAGATT------TACCATCTAGAC-------ATATAGAAGCAGAGCAAGTTTGTTAATT---------------------------------------------------------------TATCTATTTAA---------ATTCT-----ACAAATAGG---------------------------------------------------------TTAGAGGCCAATCTTCGACGTTCGGAAGTCACAAACGCA----------------------CG-TGTC---TG-------TT
droSec2 scaffold_747:4087-4328 - ACAGACAGA-GGAAGCGTGT----GCATATAAAGTATATATATT------------CAATAGCAGAGTCGATCTGGCTATGTTC------------GTCTGT----CTATCC----GTAT-------------------------GAACGTCGAGGTCT-------------GAGGAACTTTA-----AAAG---CTAGAAGATTAAGATT------TACTATCTAGAC-------ATATAGAAGCAGAGCAAGTTTGTTAATT---------------------------------------------------------------TATCTATTTAA---------ATTCA-----GCAAATAGG---------------------------------------------------------TCAGAGGCCAATCTTCGACGTTCGGAAGTTACAAACGCA----------------------CG-TGTC---TG-------TT
dm3 chr2R:767961-768212 + ACAGGCAGAAGTTATCGTTTCGGACAAGATAAACTATATATATTCTTGACCAGGATCAATAGCCGAGTCGATCTAAATATA------------------TGT----CTGTCC----GTAT-------------------------GAACGACGAGATAT-------------CAGGAAC---A-----AAAG---CTAGAAAATTGAGACT------CAGCATACAGATTCTAGAGACAAAGACGCAGCGCAAATTTGTTAATCCATATTGTTGC-------------------------------------------------------CCACTCAA---------ACAAC-----ACAAACCGCACAAAAC---------------------------------------------------------------TACCACGCCCACAA--CACAAA--------------------------TGT----GC-TG-------AT
droEre2 scaffold_4784:23104663-23104901 + ACAGACGGAAAGAATCGTTTTCGACCATATAAAGTATATATATTCTTGATCATGATCAAAAGCGGAGTCAATCTGGAAATGTCC------------ATATGT----CCGTCC----GTGT-------------------------GAACGTCGAGATCT-------------CAGGAACTACA-----AAAG---CTAG---------------------CATTCAGATACCACAGACATAGACGGAGCGCAAGTTTGTTAACCC---T---TGC--------------------------------------------------------CA--AG------------CCC-----ACAAACCGACCAAAACG---------------------------------------------------------------GCCACGTCCACAGTTTTCGAA------------------------AATGT----GTTGA-------AA
droYak3 chr2h:715278-715555 + ACAGACAGAAGGGAGCGTTTCCGACCATATAAAGTATATATATTCTTGAACAGGATCAATAGCCGATTCGATATGACCATGTCCGACTGTCCGTCCGTCTGTCCGTCCGTCC----GTAT-------------------------AAGCGCTGAGATCT-------------CAGGAACTACA-----AAAG---CTAGAAAGTGCAGATT------AAACATACAGAG-------ACATAGAGGCAGCGCAAGTTTGTTAATTCATGT---TAC--------------------------------------------------------CA--TGCCCACTC-TAA-----------------------GT------------------CAAATTAA-GTCGTATTTTGACAT---------------------------TTTCGCAAGTTCTAACGGAA----------------------CC-TGTT---TA-------AA
droEug1 scf7180000405680:233-519 + ACAAATAGAAGGAAGCATTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCC------------GTCTGTCCGTCCGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CAGGAACTATA-----GCAG---ATACAAAGTTGAGCAA------CA------------------------------TTAA----------------TGTTGCCCAATTGGAGTGTGGCCTGAAAACCATACAAAAACTAGGCAGATTTTTTTTTTGTAAAAAAAA---------ATAAT-----AGAAACAAG---------------------------------------------------------AGGAAACACTATAGTCGAGTGCCGCGACTATAAGATACC----------------------CG-TTAC---TG-------TT
droBia1 scf7180000302041:443348-443589 - ACAGGCAGAAGGAAGCGTTTTTGAACCCATAAAGTATATAAGTTCTTGTTCAGGATCACTAGCAGAGTCGATCTAGCCTTGTCC------------GTCTGT----CTGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CGAAAACTATT-----AGAG---CTAGAATATTCATACT------TGGCAGGCAGATTCCTGGGCTTCCTACGCAGCGCAAGTTCAGCGAT-----------------------------------------------------------------------------------------------------------------------AATAATAGTAAAAATATG-----------------------TAAAAGGT-AATTTTTG---C-------GCACAAATACA----------------------CT-TG---------------T
droTak1 scf7180000415349:35209-35443 - ACAGGGAGAAGGAAGCGTTTCCGACCCTATAAAGTGTATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCC------------GTCTGT----CCGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CGGAAACTAGA-----AAAG---CTAGAAGGTTGGGATT------TCCCACACATATTCTTGGGCTTCCTACGCAGCGCAAGTTTTTTTTTT---------------------------------------------------------------TGTGTATATTT---------ATTCC-----TA-------------------------------------------------------------------------------------TCGAAATGTA-GAA------------------------GACAT----TTTTC-------AA
droEle1 scf7180000491238:578666-578893 - AAAGGTAGAAGGTAGCGTTTGCGACCATATAAAGTATATACATTCTTAATCAGGTTCATCAGCCA--------------TGTCC------------GTCTGTCTGTCCGTCT----GTAT-------------------------GAACGTCGAGATCT-------------CGGAAACTA-A-----AGAT---CTTGAGATTTGGGACT------TAACATTCAGATTATGGTAGTTCCTACGCAGCGCGTATTTATTTCAAAACGG---TGC--------------------------------------------------------CA--CGCCCACTC----------------------------------------------------------------------------------------------TAACGCCCTCAAGTCATGAAAGTA----------------------TG-TG----------------
droRho1 scf7180000780167:10776-10999 - ACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCC------------GTCTGTCCGTCTGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CGGAAACTATA-----AAAG---CTAGAAGATTGGCATT------TTGCATGTAGATTT----------TAGGCAGCGCAAGTTTGTTTCAAAATGG---TGC--------------------------------------------------------CA--CGCCCCCTT----------------------------------------------------------------------------------------------TGACGCCCACAAGTCACAA------------------------------------------------
droFic1 scf7180000453435:56350-56518 + TCAGGTTGAAGG------------CCCCATAAAGTGTATATATTCTTGATCAGGATCATTATC------ATTATAACCAT------------------ACGT----TCGTCC----GTAT-------------------------GACTTTTGAGATCT-------------CGGGAACTAAA-----TAGG---CAAGAATATTGGAATCGAAATTTATCAT------TTTTGCTATTCAGACGCAGCACAGGTTTGTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droKik1 scf7180000302468:1331048-1331253 - ACACAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGGGGAATCTTTCTAGACATGTCC------------G------------------------------------------------GAAGAAATCGATTTTTTTGCCATTTTTGAAAAATTTTA-----TAAGGGGTTACATCATTAAAATT------TTTGATTTTGAT-------AAAAA------GTTGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAAATTTTTAAATAA-----------------------AGT----TTGCAGATTTATTA
droAna3 scaffold_12911:2023633-2023842 + AAAGGTTGAAGGAAT-----CTGGCCCCA-----TATGTATATTCCTTATAAGCATCAGTAGCCAAGTCGATATAGCCCTGTCC------------GTCTG--------TCT----ATAT-------------------------GAACGCGTGGATTT------------------ACTTTG-----CGAG---ATAGA-------GATT------TGGCAAGTAGACTTAT-TAATACCCACGCAGATCAAGATTGTGTCAAAATTT---GGA--------------------------------------------------------CC--AGATTTATC----------------------------------------------------------------------------------------------CAAATTTGGCCATTAATAGA---------------------------------GG-AG-------AG
droBip1 scf7180000391553:10854-11078 - ACATAGAGAAGGAATCATCTACGACCTTATAACGTACAAATATTCTTGATCAGCATCAACAGCCGAGTCGATATAGTC-----C--------ATGCGTTTA--------TCT----TTCC-------------------------G---------ATCA-------------CAGGGGCTATAGGATATAGG---ACAGAACAATAGGATT------TATCATGGAGACTCCTATAATGCAAAAACAGA---AATCTGGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCACCAGTTTATTTATGTTTTTGGAAAATGT----TTTGAGGCCAAGCT
dp5 2:21486528-21486782 - GTACCCAGAAGGAAGCGTTTCCGATCCCATAAAGTATATATATTCTCGATCAACATCAATAGCCGGGTCGATGTAGTCATGTCTG-----------GTCTGT----CCATCC----ATGC-------------------------GTCCGTCTAGATCT-------------CAGAGACAA-A-----AAAG---TCAAAACAACCTTATT------TTGTATTTACACTCCTTTGATATCACACTGTTACAAGTTTATTTC------------------------------------------------------------------GCCCACACAA---------A--------------GTACGAAAATCTGTGGCAGCCACAATTTTAA----------------------------------------------AACTACGAGAAACCGCAAACGCA-------------------------------------------
droPer2 scaffold_11:2016556-2016801 - -----CAGAAAAAAGCGTTTCCGACCCCATAAAATACACATTTTCTTGATCAGCATCAATAGCCGAGTCGATATAGCCACATCT------------GTCTGT----CCGTCC----CGAT-------------------------GACCGCCCAGATCT-------------CAGCGACTATA-----AGAG---CTAAAGCAACCAAATT------TTGTATCCAGACTCCGGTGATATCACACTGAATCAAGTTTGTTTCAAAATTT---AA--------------------------------------------------------CCA--TGTCAGCTACCGCCTCC-----AGAAAAGATGAAAATCG---------------------------------------------------------------GTGACATTCACAAA-----------------------------------------------------T
droWil2 scf2_1100000004819:4508-4742 - ACAGGCAGAAGGAAGCATCTCCGAACCCACAAAGTATATATATTCTTAATCAGGATCAACAACCGAGTCGATCTAGCCATGTCC------------GTCTGTCCGTCCGTCC----GTTT-------------------------GAACACCTAGATCT-------------CGGAGACTATA-----AGAG---CTAGAGCCACAAAATT------TGGTATGCAGTCTCGTGTAGTATGTAAAGTTATCGAGTTTGTTTCAAATTTT---TGC--------------------------------------------------------CA--CGCCCCCTT----------------------------------------------------------------------------------------------CCGCCTCCGGAATTTACAAA-----------------------------------------------
droVir3 scaffold_12723:424712-424956 - ACAGACAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCAGAGTCGATTTAGCCATGTCC------------GTCCGT----CTGTCC----GTCC-------------------------GTCCGTGGA-ATTT-------------GAAAAAAAAAA-----CCAG---CCATTGGTTTCTGATC------TAATAT-------------ACTTATAGGTAGTA----TTTGTTAGCTAACGT-----------------------------------------------------------------------------------------------GCTCTAGATA--------------------------GTCATGTTTTAATAATTTTGAAT------GCAAAACTTCAATTCTAGTTAGTTGCAACCCCA-------------------------------------------
droMoj3 scaffold_6540:488018-488295 + ACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATATTCTTGATCAGGGTGACGAGCTAAGTCGATTTGGCCCTGTCC------------GTCTGT----CTGTCCGTCCGTC-CGTCCGTTTTTCCGTCCGTATGTATGAACGCGTGGATCT-------------CAGAAGATATA-----AGAG---CTAGAGATTTGAAATT------TTTTTCCTAGGTCCGTGTATATCACGCGCATATCAAGTTTTTCTCTGTATAT-------------------------------------------------------------CGA--TAACTACTCCCGATATTTTAT----------------------------------------------------------------------------------TATCGATCAAAAACCATATCTGCA----------------------CC-TG---------------T
droGri2 scaffold_14906:12210092-12210350 - ACAGGCAGAAGGACGCATC----ACCACATAAAGTATATATATTCGTGATCAGAGTCAACAGCCGAGTCGATATAGCCATGTCC------------GTCTGT----CCGTCCGTCCGTT-CGTC----------------TGTATGAACACGCGGATCT-------------CAGAGACTATA-----TGAG---CCGGAAAATTTAGA------------ATATGGGTTCTCGTATACCCGGCGCAGATCAAGGTTGCTTTATT---T----------------------------------------------------------TATCGA--AAACTGCCTCCGTTTCTCGAATACCAATAGG---------------------------------------------------------------------CTTCGATTTCCGATAGCAATAAATGC--------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAGACAGA-GGAAGCGTGT----GCATATAAAGTATATATATTCTTGATCAGGATCAATAGCAGATTC----TGGCTATGTCC------------GTCTGT----CTATCC----GTAT-------------------------GAACGTCGAGGTCT-------------GAGGAACTTTA-----AAAG---CTAGAAGATTAAGATT------TACCATCTAGAC-------ATATAGAAGCAGAGCAAGTTTGTTAATT---------------------------------------------------------------TATCTATTTAA---------ATTCT-----ACAAATAGG---------------------------------------------------------TTAGAGGCCAATCTTCGACGTTCGGAAGTCACAAACGCA----------------------CG-TGTC---TG-------TTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................GTATATATATTCTTGATCAGGATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.5030000000040026000000
.................................GTATATATATTCTTGATCAGGATCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................27201.5030000000005025000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGACGTTCGGAAGTCACAAACGCA----------------------CG-..................2821.00200000011000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCAATCTTCGACGTTCGG.........................................................2121.00200000000200000000
..........................................TTCTTGATCAGGATCAATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.9519000000000019000000
............................................................................................................................................................................GAGGAACTTTA-----AAAG---CTAGAAGATTAAGA........................................................................................................................................................................................................................................................................................................2920.50100000000000001000
...............................................................................TGTCC------------GTCTGT----CTATCC----GTAT-------------------------GAACGA..................................................................................................................................................................................................................................................................................................................................................................2720.50100000000100000000
..............................................................................................................................................................T-------------GAGGAACTTTA-----AAAG---CTAGAAGATTA...........................................................................................................................................................................................................................................................................................................2720.50100000000000001000
............................................................................................................................................................................GAGGAACTTTA-----AAAG---CTAGAAGATTAT..........................................................................................................................................................................................................................................................................................................2720.50100000000100000000
...................................................................................................TGT----CTATCC----GTAT-------------------------GAACGTCGAGGTC...........................................................................................................................................................................................................................................................................................................................................................2620.50100000010000000000
.......................................................................................................................................................CGAGGTCT-------------GAGGAACTTTA-----AAAG---C.....................................................................................................................................................................................................................................................................................................................2420.50100000000100000000
...GACAGA-GGAAGCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
..............................................................................................................................................................T-------------GAGGAACTTTA-----AAAG---CTAGAAGATTAAGA........................................................................................................................................................................................................................................................................................................3020.50100000010000000000
..............................................................................................................................................................................................................................TCTAGAC-------ATATAGAAGCAGAGCAAGTT.........................................................................................................................................................................................................................................................2720.50100000000000001000
............................................................................................................................................................TCT-------------GAGGAACTTTA-----AAAG---CT....................................................................................................................................................................................................................................................................................................................2020.50110000000000000000
............................................................................................................................................................................GAGGAACTTTA-----AAAG---CTAGAAGAT.............................................................................................................................................................................................................................................................................................................2420.50100000010000000000
...........................................................................................................TATCC----GTAT-------------------------GAACGTCGAGGTC...........................................................................................................................................................................................................................................................................................................................................................2220.50100000000010000000
..............................................................................................................................................................T-------------GAGGAACTTTA-----AAAG---CTAGAAGATT............................................................................................................................................................................................................................................................................................................2620.50100000000100000000
.................................GTATATATATTCTTGATCAGGATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.40800000005000003000
.............................TAAAGTATATATATTCTTGATCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.35700000070000000000
..................................TATATATATTCTTGATCAGGATCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.30600020000004000000
..............................AAAGTATATATATTCTTGATCAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20400000040000000000
...................................ATATATATTCTTGATCAGGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20400200002000000000
............................................CTTGATCAGGATCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.20400000000004000000
....................................TATATATTCTTGATCAGGATCAATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.15300000002100000000
.................................GTATATATATTCTTGATCAGGATCAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.15300300000000000000
..........................................................................................................CTATCC----GTAT-------------------------GAACGT..................................................................................................................................................................................................................................................................................................................................................................1690.11100000010000000000
.....................................ATATATTCTTGATCAGGATCAATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200000000002000000
...................................ATATATATTCTTGATCAGGATCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000010010000
.................................GTATATATATTCTTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.10200000000002000000
.............................................................................................................................................................................AGGAACTTTA-----AAAG---CTAGA.................................................................................................................................................................................................................................................................................................................19110.09100000000001000000
.................................................................................................................................................................................ACTTTA-----AAAG---CTAGAA................................................................................................................................................................................................................................................................................................................16130.08100000000001000000
.............................................TTGATCAGGATCAATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
...................................ATATATATTCTTGATCAGGATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000010000000
..........................................TTCTTGATCAGGATCAATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000001000
....................................TATATATTCTTGATCAGGATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000000001000
....................................TATATATTCTTGATCAGGATCAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000001000000000
droSec2
ACAGACAGA-GGAAGCGTGT----GCATATAAAGTATATATATT------------CAATAGCAGAGTCGATCTGGCTATGTTC------------GTCTGT----CTATCC----GTAT-------------------------GAACGTCGAGGTCT-------------GAGGAACTTTA-----AAAG---CTAGAAGATTAAGATT------TACTATCTAGAC-------ATATAGAAGCAGAGCAAGTTTGTTAATT---------------------------------------------------------------TATCTATTTAA---------ATTCA-----GCAAATAGG---------------------------------------------------------TCAGAGGCCAATCTTCGACGTTCGGAAGTTACAAACGCA----------------------CG-TGTC---TG-------TTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................ATAGAAGCAGAGCAAGTTTGTT.....................................................................................................................................................................................................................................................2211.0010100
..............................................................................................................................................................................................AG---CTAGAAGATTAAGATT------................................................................................................................................................................................................................................................................................................1860.1710010
dm3
ACAGGCAGAAGTTATCGTTTCGGACAAGATAAACTATATATATTCTTGACCAGGATCAATAGCCGAGTCGATCTAAATATA------------------TGT----CTGTCC----GTAT-------------------------GAACGACGAGATAT-------------CAGGAAC---A-----AAAG---CTAGAAAATTGAGACT------CAGCATACAGATTCTAGAGACAAAGACGCAGCGCAAATTTGTTAATCCATATTGTTGC-------------------------------------------------------CCACTCAA---------ACAAC-----ACAAACCGCACAAAAC---------------------------------------------------------------TACCACGCCCACAA--CACAAA--------------------------TGT----GC-TG-------ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................TCGGACAAGATAAACTATATATATTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................271131.0013100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000038232204700000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCGGACAAGATAAACTATATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23189.008900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000020222551600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCGGACAAGATAAACTATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21174.007400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000024131102600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCGGACAAGATAAACTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19153.00530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001061571400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAAGTTATCGTTTCGGACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22143.0043000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109671100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGTTATCGTTTCGGACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000109501600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCGGACAAGATAAACTATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22139.0039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000613110900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTCGGACAAGATAAACTATATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24138.003800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018951400000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TCTAAATATA------------------TGT----CTGTCC----GTAT-------------------------GAAC....................................................................................................................................................................................................................................................................................................................................................................27137.003700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000070001000000000000100010503360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AACGACGAGATAT-------------CAGGAAC---A-----AAAG---C.....................................................................................................................................................................................................................................................................................................................26134.00340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000051000010000000000000000000000000000000000000000000000000540400020000000100000102230000000000000000000000000000000000000000000000000000000000001000000100000000100000000000000000000000000
.............................................................................TATA------------------TGT----CTGTCC----GTAT-------------------------GAACGACGA...............................................................................................................................................................................................................................................................................................................................................................26131.00310000000000000000000000000000000000000010000030002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200010100000300000000000000000000000000000000000001200000000000010300000200000000000000000000000000000000000000000000000000000000000000000000000000000201000000310000000000000000100000000
..............................................................................................................................................................T-------------CAGGAAC---A-----AAAG---CTAGAAAATTGA..........................................................................................................................................................................................................................................................................................................25131.00310000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010100020010000000020802280000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000
............................................................................................................................................................TAT-------------CAGGAAC---A-----AAAG---CTAGAAAATTGA..........................................................................................................................................................................................................................................................................................................27124.002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200002000401011120000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................T-------------------------GAACGACGAGATAT-------------CAGGAAC---A-----AAAG---C.....................................................................................................................................................................................................................................................................................................................28123.00230000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000100000000000000000000000000000000000000000000000000000000001000005000000010004010000000000000000000000000000000000000000000000000000000000000000001103000000000000000000000000000000000
..................TTCGGACAAGATAAACTATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023331100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CAGGAAC---A-----AAAG---CTAGAAAATTGAGAC.......................................................................................................................................................................................................................................................................................................27122.002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000100003230000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.....................................................................................................................TAT-------------------------GAACGACGAGATAT-------------CAGGAAC---...................................................................................................................................................................................................................................................................................................................................24121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003313900000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TTTGTTAATCCATATTGTTGC-------------------------------------------------------CCACT..........................................................................................................................................................................26121.002100000000000000000000000000000000000000000000100000000000000000000000000000000000002000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................TAT-------------------------GAACGACGAGATAT-------------CAGGAAC---A-----.............................................................................................................................................................................................................................................................................................................................25121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000002000000000000001030703020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........GTTATCGTTTCGGACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005029400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................T-------------CAGGAAC---A-----AAAG---CTAGAAAATTGAGAC.......................................................................................................................................................................................................................................................................................................28119.00190000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000020000100050211010000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
....................................................................................................................................................................................................TAGAAAATTGAGACT------CAGCATACAGAT....................................................................................................................................................................................................................................................................................27119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000010401130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTCTAGAGACAAAGACGCAGCGCAAA...........................................................................................................................................................................................................................................................26218.503700000000000000000000000000000000000000000000000010000000000000000000000000000000000000200000000000000000000000000002000000000000000000000000000000130000000000000000000000000000000000000000001000000000000000000000000000201400160000000000000000000000000000000000000000000000000000000000000000002100000000100000000000000000000000000
.................TTTCGGACAAGATAAACTATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000006342200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AAGTTATCGTTTCGGACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000006270100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAAGTTATCGTTTCGGACAAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001058101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTTCGGACAAGATAAACTATATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003012500000000000000000101030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TATCGTTTCGGACAAGATAAACTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24116.00160000000000000000000000100000000000000000000000000010100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000004000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TATCGTTTCGGACAAGATAAACTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100031000000000000000000000000000000000000000000000500001000100000000000100010000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......GAAGTTATCGTTTCGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20115.001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011112000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGTTATCGTTTCGGACAAGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006030600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GTAT-------------------------GAACGACGAGATAT-------------CAGGAAC---...................................................................................................................................................................................................................................................................................................................................25115.001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TAT-------------CAGGAAC---A-----AAAG---CTAGAAAATT............................................................................................................................................................................................................................................................................................................25115.00150000000000000000000000000000000000000000000010000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001003000200000000020101000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................TCGGACAAGATAAACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001530500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................T-------------------------GAACGACGAGATAT-------------CAGGAAC---...................................................................................................................................................................................................................................................................................................................................22114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001123600000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................AC---------------------------------------------------------------TACCACGCCCACAA--CACAAA--------------------------TGT----GC-T..........2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CGCAGCGCAAATTTGTTAATCCATAT............................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGTCC----GTAT-------------------------GAACGACGAGATAT-------------CAGG.........................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TGAGACT------CAGCATACAGATTCTAGAGAC...........................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
............TATCGTTTCGGACAAGATAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CGACGAGATAT-------------CAGGAAC---A-----AAAG---C.....................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
.......................................................................................................................................................................................................AAAATTGAGACT------CAGCATACAGATTC..................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TCTAAATATA------------------TGT----CTGTCC----GTAT-------------------------GAA.....................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CTAGAAAATTGAGACT------CAGCATACAGAT....................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................ATTTGTTAATCCATATTGTTGC-------------------------------------------------------CCACT..........................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGGCAGAAGTTATCGTTTCGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........AGTTATCGTTTCGGACAAGATAAACTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................T-------------CAGGAAC---A-----AAAG---CTAGAAA...............................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................CAAC-----ACAAACCGCACAAAAC---------------------------------------------------------------TACCACG..............................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TTATCGTTTCGGACAAGATAAACTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........AAGTTATCGTTTCGGACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATAT-------------CAGGAAC---A-----AAAG---CTAGAAAAT.............................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CAGGAAC---A-----AAAG---CTAGAAAATTGAGA........................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CGACGAGATAT-------------CAGGAAC---A-----AAAG---CTA...................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TATA------------------TGT----CTGTCC----GTAT-------------------------GAA.....................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GATAT-------------CAGGAAC---A-----AAAG---C.....................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGGCAGAAGTTATCGTTTCGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GAGTCGATCTAAATATA------------------TGT----CTGTC..........................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCCATATTGTTGC-------------------------------------------------------CCACTCAA---------ACAAC-----A...................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTTATCGTTTCGGACAAGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TTGAGACT------CAGCATACAGATTCTAGAGA............................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TCGTTTCGGACAAGATAAACTATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TCGATCTAAATATA------------------TGT----CTGTCC----GT...................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TATA------------------TGT----CTGTCC----GTAT-------------------------GAACG...................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TAGAAAATTGAGACT------CAGCATACAG......................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................AATTTGTTAATCCATATTGTTGC-------------------------------------------------------CCAC...........................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TAATCCATATTGTTGC-------------------------------------------------------CCACTCAA---------ACAA..........................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................C-----ACAAACCGCACAAAAC---------------------------------------------------------------TACCACGCCC...........................................................2722.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AC---A-----AAAG---CTAGAAAATTGAGACT------CAGCA...........................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................TGTTAATCCATATTGTTGC-------------------------------------------------------CC.............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTCTAGAGACAAAGACGCAGCGCAA............................................................................................................................................................................................................................................................25201.90380000000000000000000000000000000000000000000000000000100000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000001000000000100050902140000000000000000000000000000000000000000000000000000000000000000002300000000301000000000000000000000000
......................................................ATCAATAGCCGAGTCGATCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................21201.903800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000001400010000000000000000000000000003000000000000000100000000000000000000000000000000000000000000000000000000000000000000033000000001000000000001310010
............................................................................................................................................................................................................................CATACAGATTCTAGAGACAAAGACGC...................................................................................................................................................................................................................................................................26201.85370000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000010300000000000000000000000000000000000000100001000000100010100000000020400230000000000100000000000000000000000000000000000000000000000001000000211000000700000000000000000100000000
....................................................................................................................................................................................................................................TTCTAGAGACAAAGACGCAGCGCA.............................................................................................................................................................................................................................................................24201.80360000000000000000000000100000000000000010001000000010000001010000000000000000000000000030000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000100100001000000012000000000000130000430000000000000000000000000000000000000000000000000000000000000000001200000000031000000000000000100000000
.............................................TTGACCAGGATCAATAGCCGAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2631.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000100400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TATATTCTTGACCAGGATCAATAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2631.6750000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CAGATTCTAGAGACAAAGACGCAGC................................................................................................................................................................................................................................................................25201.60320000000000000000000000000000000000000000300000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000100100000200000000000000000000000000000000000000000000000100000000000000020200180000000000000000000000000000000000000000000000000000000000000000000502000000200000000000000000000000000
.................................................................................................................................................................................................................................AGATTCTAGAGACAAAGACGCAGC................................................................................................................................................................................................................................................................24201.553100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000040000000000000000041150000000000000000000000000000000000000000000000000000000000000010000000000000400000000000000000000000000
.................................................................................................................................................................................................................CT------CAGCATACAGATTCTAGAGACAAA........................................................................................................................................................................................................................................................................2621.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CCAGGATCAATAGCCGAGTCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.5030000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................GT----CTGTCC----GTAT-------------------------GAACGACGAGATA...........................................................................................................................................................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TGT----CTGTCC----GTAT-------------------------GAACGACGAGA.............................................................................................................................................................................................................................................................................................................................................................2421.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GACCAGGATCAATAGCCGAGTCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CTAGAGACAAAGACGCAGCGCAAA...........................................................................................................................................................................................................................................................2421.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
....................................................................................................................................................................................................................................TTCTAGAGACAAAGACGCAGCGCAAATC.........................................................................................................................................................................................................................................................2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ACAGATTCTAGAGACAAAGACGCAGC................................................................................................................................................................................................................................................................26201.35270000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000100000000000000000000000000000000000100001000000000000000000000000001170000000000000000000000000000000000000000000000000000000000000000001300000000700000000000000000000000000
.............................................TTGACCAGGATCAATAGCCGAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2431.3340000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................TTCTTGACCAGGATCAATAGCCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2531.3340000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000001000000000
....................................................................................................................................................................................................................................TTCTAGAGACAAAGACGCAGC................................................................................................................................................................................................................................................................21201.202400000000000000000000000000000000000000000010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000010003000000000000001000000000000300001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000
..............................................................................................................................................................................................................................TACAGATTCTAGAGACAAAGACG....................................................................................................................................................................................................................................................................23201.10220000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202000200010000000000020202001000000000000000000000000000000000000000000000000000000000000000000600000000000000000010000000000000000
...................................................................TCGATCTAAATATA------------------TGT----CTGTCC----GG...................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AAATTTGTTAATCCATATTGTTGC-------------------------------------------------------CCAC...........................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCCATATTGTTGC-------------------------------------------------------CCACTCAA---------ACAAC-----....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AT-------------------------GAACGACGAGATAT-------------CAGGA........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACGCCCACAA--CACAAA--------------------------TGT----GC-...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGGACAAGATAAACTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................C-------------------------------------------------------CCACTCAA---------ACAAC-----ACAAACCGCACA........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TATA------------------TGT----CTGTCC----GTAT-------------------------GAACGACGG...............................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGGCAGAAGTTATCGTTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................TAAATATA------------------TGT----CTGTCC----GTAT-------------------------GAACGAC.................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................TGC-------------------------------------------------------CCACTCAA---------ACAAC-----ACA.................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AGGAAC---A-----AAAG---CTAGAAA...............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTAATCCATATTGTTGC-------------------------------------------------------CCAC...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CAGAAGTTATCGTTTCGGACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................ATA------------------TGT----CTGTCC----GTAT-------------------------GAACGACGAGA.............................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACAGACGGAAAGAATCGTTTTCGACCATATAAAGTATATATATTCTTGATCATGATCAAAAGCGGAGTCAATCTGGAAATGTCC------------ATATGT----CCGTCC----GTGT-------------------------GAACGTCGAGATCT-------------CAGGAACTACA-----AAAG---CTAG---------------------CATTCAGATACCACAGACATAGACGGAGCGCAAGTTTGTTAACCC---T---TGC--------------------------------------------------------CA--AG------------CCC-----ACAAACCGACCAAAACG---------------------------------------------------------------GCCACGTCCACAGTTTTCGAA------------------------AATGT----GTTGA-------AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................TGATCATGATCAAAAGCGGAGTCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
................................................................................................................................................................................................................................................................................TGC--------------------------------------------------------CA--AG------------CCC-----ACAAACCGACCAAAACG---------------------------------------------------------------G...................................................................2811.0011000000
............................................................................................................................................................TCT-------------CAGGAACTACA-----AAAG---CTA...................................................................................................................................................................................................................................................................................................................21200.0510000100
............................................................................................................................................................TCT-------------CAGGAACTACA-----AAAG---CT....................................................................................................................................................................................................................................................................................................................20200.0510001000
.............................................................................................................................................................CT-------------CAGGAACTACA-----AAAG---CTA...................................................................................................................................................................................................................................................................................................................20200.0510000010
droYak3
ACAGACAGAAGGGAGCGTTTCCGACCATATAAAGTATATATATTCTTGAACAGGATCAATAGCCGATTCGATATGACCATGTCCGACTGTCCGTCCGTCTGTCCGTCCGTCC----GTAT-------------------------AAGCGCTGAGATCT-------------CAGGAACTACA-----AAAG---CTAGAAAGTGCAGATT------AAACATACAGAG-------ACATAGAGGCAGCGCAAGTTTGTTAATTCATGT---TAC--------------------------------------------------------CA--TGCCCACTC-TAA-----------------------GT------------------CAAATTAA-GTCGTATTTTGACAT---------------------------TTTCGCAAGTTCTAACGGAA----------------------CC-TGTT---TA-------AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................CGTATTTTGACAT---------------------------TTTCGCAAGT.....................................................2311.00101000000000
..........................................................ATAGCCGATTCGATATGACCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
.....CAGAAGGGAGCGTTTCCGACCATATAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2860.17100000000001
................................................................................GTCCGACTGTCCGTCCGTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................20110.09101000000000
..............................................................................................................................................................................GGAACTACA-----AAAG---CTAGAAAGT.............................................................................................................................................................................................................................................................................................................22200.05101000000000
..........................................................................................................................................................GATCT-------------CAGGAACTACA-----AAAG---C.....................................................................................................................................................................................................................................................................................................................21200.05100100000000
droEug1
ACAAATAGAAGGAAGCATTTCCGACCCTATAAAGTATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCC------------GTCTGTCCGTCCGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CAGGAACTATA-----GCAG---ATACAAAGTTGAGCAA------CA------------------------------TTAA----------------TGTTGCCCAATTGGAGTGTGGCCTGAAAACCATACAAAAACTAGGCAGATTTTTTTTTTGTAAAAAAAA---------ATAAT-----AGAAACAAG---------------------------------------------------------AGGAAACACTATAGTCGAGTGCCGCGACTATAAGATACC----------------------CG-TTAC---TG-------TTSizeHit CountTotal NormTotal
No Reads
droBia1
ACAGGCAGAAGGAAGCGTTTTTGAACCCATAAAGTATATAAGTTCTTGTTCAGGATCACTAGCAGAGTCGATCTAGCCTTGTCC------------GTCTGT----CTGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CGAAAACTATT-----AGAG---CTAGAATATTCATACT------TGGCAGGCAGATTCCTGGGCTTCCTACGCAGCGCAAGTTCAGCGAT-----------------------------------------------------------------------------------------------------------------------AATAATAGTAAAAATATG-----------------------TAAAAGGT-AATTTTTG---C-------GCACAAATACA----------------------CT-TG---------------TSizeHit CountTotal NormTotal
No Reads
droTak1
ACAGGGAGAAGGAAGCGTTTCCGACCCTATAAAGTGTATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCC------------GTCTGT----CCGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CGGAAACTAGA-----AAAG---CTAGAAGGTTGGGATT------TCCCACACATATTCTTGGGCTTCCTACGCAGCGCAAGTTTTTTTTTT---------------------------------------------------------------TGTGTATATTT---------ATTCC-----TA-------------------------------------------------------------------------------------TCGAAATGTA-GAA------------------------GACAT----TTTTC-------AASizeHit CountTotal NormTotal
No Reads
droEle1
AAAGGTAGAAGGTAGCGTTTGCGACCATATAAAGTATATACATTCTTAATCAGGTTCATCAGCCA--------------TGTCC------------GTCTGTCTGTCCGTCT----GTAT-------------------------GAACGTCGAGATCT-------------CGGAAACTA-A-----AGAT---CTTGAGATTTGGGACT------TAACATTCAGATTATGGTAGTTCCTACGCAGCGCGTATTTATTTCAAAACGG---TGC--------------------------------------------------------CA--CGCCCACTC----------------------------------------------------------------------------------------------TAACGCCCTCAAGTCATGAAAGTA----------------------TG-TG----------------SizeHit CountTotal NormTotal
No Reads
droRho1
ACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGTTCAGGATCACTAGCCGAGTCGATCTAGCCATGTCC------------GTCTGTCCGTCTGTCC----GTAT-------------------------GAACGCTGAGATCT-------------CGGAAACTATA-----AAAG---CTAGAAGATTGGCATT------TTGCATGTAGATTT----------TAGGCAGCGCAAGTTTGTTTCAAAATGG---TGC--------------------------------------------------------CA--CGCCCCCTT----------------------------------------------------------------------------------------------TGACGCCCACAAGTCACAA------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCAGGTTGAAGG------------CCCCATAAAGTGTATATATTCTTGATCAGGATCATTATC------ATTATAACCAT------------------ACGT----TCGTCC----GTAT-------------------------GACTTTTGAGATCT-------------CGGGAACTAAA-----TAGG---CAAGAATATTGGAATCGAAATTTATCAT------TTTTGCTATTCAGACGCAGCACAGGTTTGTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droKik1
ACACAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAACAGGGGAATCTTTCTAGACATGTCC------------G------------------------------------------------GAAGAAATCGATTTTTTTGCCATTTTTGAAAAATTTTA-----TAAGGGGTTACATCATTAAAATT------TTTGATTTTGAT-------AAAAA------GTTGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAAAATTTTTAAATAA-----------------------AGT----TTGCAGATTTATTASizeHit CountTotal NormTotal
No Reads
droAna3
AAAGGTTGAAGGAAT-----CTGGCCCCA-----TATGTATATTCCTTATAAGCATCAGTAGCCAAGTCGATATAGCCCTGTCC------------GTCTG--------TCT----ATAT-------------------------GAACGCGTGGATTT------------------ACTTTG-----CGAG---ATAGA-------GATT------TGGCAAGTAGACTTAT-TAATACCCACGCAGATCAAGATTGTGTCAAAATTT---GGA--------------------------------------------------------CC--AGATTTATC----------------------------------------------------------------------------------------------CAAATTTGGCCATTAATAGA---------------------------------GG-AG-------AGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACATAGAGAAGGAATCATCTACGACCTTATAACGTACAAATATTCTTGATCAGCATCAACAGCCGAGTCGATATAGTC-----C--------ATGCGTTTA--------TCT----TTCC-------------------------G---------ATCA-------------CAGGGGCTATAGGATATAGG---ACAGAACAATAGGATT------TATCATGGAGACTCCTATAATGCAAAAACAGA---AATCTGGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCACCAGTTTATTTATGTTTTTGGAAAATGT----TTTGAGGCCAAGCTSizeHit CountTotal NormTotal
No Reads
dp5
GTACCCAGAAGGAAGCGTTTCCGATCCCATAAAGTATATATATTCTCGATCAACATCAATAGCCGGGTCGATGTAGTCATGTCTG-----------GTCTGT----CCATCC----ATGC-------------------------GTCCGTCTAGATCT-------------CAGAGACAA-A-----AAAG---TCAAAACAACCTTATT------TTGTATTTACACTCCTTTGATATCACACTGTTACAAGTTTATTTC------------------------------------------------------------------GCCCACACAA---------A--------------GTACGAAAATCTGTGGCAGCCACAATTTTAA----------------------------------------------AACTACGAGAAACCGCAAACGCA-------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................A--------------GTACGAAAATCTGTGGCAGG...........................................................................................................................2111.0010000000010
.....................................................CATCAATAGCCGGGTCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.0810100000000
.....CAGAAGGAAGCGTTTCCGATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.0810100000000
................GTTTCCGATCCCATAAAGTATATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.0610100000000
...............CGTTTCCGATCCCATAAAGTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.0610100000000
...................TCCGATCCCATAAAGTATATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
.................TTTCCGATCCCATAAAGTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...............CGTTTCCGATCCCATAAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
-----CAGAAAAAAGCGTTTCCGACCCCATAAAATACACATTTTCTTGATCAGCATCAATAGCCGAGTCGATATAGCCACATCT------------GTCTGT----CCGTCC----CGAT-------------------------GACCGCCCAGATCT-------------CAGCGACTATA-----AGAG---CTAAAGCAACCAAATT------TTGTATCCAGACTCCGGTGATATCACACTGAATCAAGTTTGTTTCAAAATTT---AA--------------------------------------------------------CCA--TGTCAGCTACCGCCTCC-----AGAAAAGATGAAAATCG---------------------------------------------------------------GTGACATTCACAAA-----------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................GAGTCGATATAGCCACATCT------------.........................................................................................................................................................................................................................................................................................................................................................................................................................2020.501010000
droWil2
ACAGGCAGAAGGAAGCATCTCCGAACCCACAAAGTATATATATTCTTAATCAGGATCAACAACCGAGTCGATCTAGCCATGTCC------------GTCTGTCCGTCCGTCC----GTTT-------------------------GAACACCTAGATCT-------------CGGAGACTATA-----AGAG---CTAGAGCCACAAAATT------TGGTATGCAGTCTCGTGTAGTATGTAAAGTTATCGAGTTTGTTTCAAATTTT---TGC--------------------------------------------------------CA--CGCCCCCTT----------------------------------------------------------------------------------------------CCGCCTCCGGAATTTACAAA-----------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
ACAGGCAGAAGGAAGCATCTCCGAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.25201010
.CAGGCAGAAGGAAGCATCTCCGAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.25202000
.....CAGAAGGAAGCATCTCCGAACCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.13101000
........AAGGAAGCATCTCCGAACCCACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.13101000
............AAGCATCTCCGAACCCACAAAGTATAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.13101000
........AAGGAAGCATCTCCGAACCCACAAAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.13101000
....GCAGAAGGAAGCATCTCCGAACCCACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.13101000
........AAGGAAGCATCTCCGAACCCACAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.13101000
......AGAAGGAAGCATCTCCGAACCCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13101000
.............AGCATCTCCGAACCCACAAAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.13101000
.CAGGCAGAAGGAAGCATCTCCGAACCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2880.13101000
....GCAGAAGGAAGCATCTCCGAACCCACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.13101000
..................................................................................................................................................................................................................T------TGGTATGCAGTCTCGTGTAGTATG........................................................................................................................................................................................................................................................................25200.10202000
..............................................TAATCAGGATCAACAACCGAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.08101000
........................................TATTCTTAATCAGGATCAACAACCGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.08101000
..............................................................................................................................................................................................................................TGCAGTCTCGTGTAGTATG........................................................................................................................................................................................................................................................................19200.05100001
..................................................................................................................................................................................................................T------TGGTATGCAGTCTCGTGTA.............................................................................................................................................................................................................................................................................20200.05100001
............................................................AACCGAGTCGATCTAGCCATGTCC------------GT.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100
............................................................................................................................................................TCT-------------CGGAGACTATA-----AGAG---CTA...................................................................................................................................................................................................................................................................................................................21200.05101000
.........................................................................................................................................................................................................................TGGTATGCAGTCTCGTGTAGTAT.........................................................................................................................................................................................................................................................................23200.05100010
ACAGGCAGAAGGAAGCATCTCCGAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
............................................................................................................................................................................................................................TATGCAGTCTCGTGTAGTATG........................................................................................................................................................................................................................................................................21200.05101000
.......................................................................................................................T-------------------------GAACACCTAGATCT-------------CGGAGA.......................................................................................................................................................................................................................................................................................................................................21200.05100010
droVir3
ACAGACAGAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATCAGCATCAATAGCAGAGTCGATTTAGCCATGTCC------------GTCCGT----CTGTCC----GTCC-------------------------GTCCGTGGA-ATTT-------------GAAAAAAAAAA-----CCAG---CCATTGGTTTCTGATC------TAATAT-------------ACTTATAGGTAGTA----TTTGTTAGCTAACGT-----------------------------------------------------------------------------------------------GCTCTAGATA--------------------------GTCATGTTTTAATAATTTTGAAT------GCAAAACTTCAATTCTAGTTAGTTGCAACCCCA-------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................TTCTTGATCAGCATCAATAGCAGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.091000000000000000000000000000010000000000000000000000000000000000
.......................................ATATTCTTGATCAGCATCAATAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.071000000000000000000000000100000000000000000000000000000000000000
......................................TATATTCTTGATCAGCATCAATAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.071000000000000000000000000000000010000000000000000000000000000000
.................................................TCAGCATCAATAGCAGAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.071000000000000000000001000000000000000000000000000000000000000000
..............................AAAGTATATATATTCTTGATCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000100000000000000000000000000000000000
........................................TATTCTTGATCAGCATCAATAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000001000000000000000000000000000000000000000000
.......................................ATATTCTTGATCAGCATCAATAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000001000000000000000000000000000000
..............GCATCTCCGACCCCATAAAGTATATAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
.......................................ATATTCTTGATCAGCATCAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
......................................TATATTCTTGATCAGCATCAATAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
...GACAGAAGGAAGCATCTCCGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
......................................TATATTCTTGATCAGCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................TAGCCATGTCC------------GTCCGT----CTG............................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
ACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATATTCTTGATCAGGGTGACGAGCTAAGTCGATTTGGCCCTGTCC------------GTCTGT----CTGTCCGTCCGTC-CGTCCGTTTTTCCGTCCGTATGTATGAACGCGTGGATCT-------------CAGAAGATATA-----AGAG---CTAGAGATTTGAAATT------TTTTTCCTAGGTCCGTGTATATCACGCGCATATCAAGTTTTTCTCTGTATAT-------------------------------------------------------------CGA--TAACTACTCCCGATATTTTAT----------------------------------------------------------------------------------TATCGATCAAAAACCATATCTGCA----------------------CC-TG---------------TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................TGTATAT-------------------------------------------------------------CGA--TAACTACTCCCGA.............................................................................................................................................................2330.331000010
......................................................................................................................................................................................................................................................................TGTATAT-------------------------------------------------------------CGA--TAACTACTCCCG..............................................................................................................................................................2230.331000010
......................................................................................................................................................................................................................................................................TGTATAT-------------------------------------------------------------CGA--TAACTACTCCC...............................................................................................................................................................2130.331000010
......................................................................................................................................................................................................................................................................TGTATAT-------------------------------------------------------------CGA--TAACTACTCCCGATT...........................................................................................................................................................2550.201000010
............................................................................................................................................................................................................................................................................T-------------------------------------------------------------CGA--TAACTACTCCCGATATTTTAT----------------------------------------------------------------------------------TAT................................................................28200.153300000
.....CAGAAGGAGGCGTGGCAGACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000030
..................................................CAGGGTGACGAGCTAAGTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.132000020
..............................................................................................................................................................................GAAGATATA-----AGAG---CTAGAGATTTGA..........................................................................................................................................................................................................................................................................................................25160.132100001
........................................................................TTGGCCCTGTCC------------GTCTGT----CTGTCCGTC......................................................................................................................................................................................................................................................................................................................................................................................................27200.102000020
................................................................AAGTCGATTTGGCCCTGTCC------------GT.......................................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
..................................................................................................................................................................................ATATA-----AGAG---CTAGAGATTT............................................................................................................................................................................................................................................................................................................19200.102200000
.............................................................................CCTGTCC------------GTCTGT----CTGTCCG........................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
...................................................AGGGTGACGAGCTAAGTCGATTTGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................27110.091000010
..............................................................................................................................................................................GAAGATATA-----AGAG---CTAGAGATTTGAAA........................................................................................................................................................................................................................................................................................................27140.071100000
......................................................................................................................................................................................................................................................................TGTATAT-------------------------------------------------------------CGA--TAACTACTCCCA..............................................................................................................................................................22150.071000010
..............................................................................................................................................................................GAAGATATA-----AGAG---CTAGAGATTTGAA.........................................................................................................................................................................................................................................................................................................26160.061100000
..............................................................................................................................................................................GAAGATATA-----AGAG---CTAGAGATTTG...........................................................................................................................................................................................................................................................................................................24190.051100000
............................................................................................................................................................................................................................TTCCTAGGTCCGTGTATATCACGCG....................................................................................................................................................................................................................................................................25200.051100000
.......................................ATATTCTTGATCAGGGTGACGAGCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
...........................................................................................................................................................................................................................TTTCCTAGGTCCGTGTATATCAC.......................................................................................................................................................................................................................................................................23200.051010000
..............................................................................................................................................................T-------------CAGAAGATATA-----AGAG---CTAGAGATT.............................................................................................................................................................................................................................................................................................................25200.051000010
...................................ATATATATTCTTGATCAGGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...............................................................TAAGTCGATTTGGCCCTGTCC------------.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................................................TAGGTCCGTGTATATCACGCGC...................................................................................................................................................................................................................................................................22200.051000010
droGri2
ACAGGCAGAAGGACGCATC----ACCACATAAAGTATATATATTCGTGATCAGAGTCAACAGCCGAGTCGATATAGCCATGTCC------------GTCTGT----CCGTCCGTCCGTT-CGTC----------------TGTATGAACACGCGGATCT-------------CAGAGACTATA-----TGAG---CCGGAAAATTTAGA------------ATATGGGTTCTCGTATACCCGGCGCAGATCAAGGTTGCTTTATT---T----------------------------------------------------------TATCGA--AAACTGCCTCCGTTTCTCGAATACCAATAGG---------------------------------------------------------------------CTTCGATTTCCGATAGCAATAAATGC--------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:31 AM