dsi_16930

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+
TART_DV	LINE	Jockey	-

##################################################################################################################################################################################### CGATCCTCACCAGGAGCTGCAGTTCGAGCAGCATCAGCCGCACCAGTCGCATCAGCAGCATCAGCAGCAGCAACATCAGCAGCAACAACATCAGCAGCAACATCAGCAGCAGCAGCAGCTGCAACAGCAACATCAGCAACATCAGCAGCTGCAGCATCAGCAGCAGCAACATCAGCAGCAA ***************************************************.((........................................))....*****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553488 RT_0-2 hours eggs
...............GCTGCAGTTCGAGCAGTA....................................................................................................................................................	18	1	2	0.50	1	1	0	0	0
...............GCTGCAGTTCGAGCA.......................................................................................................................................................	15	0	3	0.33	1	1	0	0	0
...............GCTGCAGTTCGAGCAGT.....................................................................................................................................................	17	1	5	0.20	1	1	0	0	0
.............TAGCTGCAGTTCGAGCAGT.....................................................................................................................................................	19	2	6	0.17	1	1	0	0	0
...................................................................................AACAACATCAGCAGCAACA...............................................................................	19	0	6	0.17	1	0	1	0	0
.....................GTTCGAGCCCCATCAGCCA.............................................................................................................................................	19	3	20	0.05	1	0	0	0	1
...............................................................................CAGCAACAACATCAGCA.....................................................................................	17	0	20	0.05	1	0	1	0	0
.......................................................................................................CAGCAGCAGCAGCAGCTGCAACTGC.....................................................	25	1	20	0.05	1	0	0	1	0
................................................................................................GCAACATCAGCAGCAGCA...................................................................	18	0	20	0.05	1	1	0	0	0
.....................................................AGCAGCATCAGCAGCAGC..............................................................................................................	18	0	20	0.05	1	1	0	0	0

GCTAGGAGTGGTCCTCGACGTCAAGCTCGTCGTAGTCGGCGTGGTCAGCGTAGTCGTCGTAGTCGTCGTCGTTGTAGTCGTCGTTGTTGTAGTCGTCGTTGTAGTCGTCGTCGTCGTCGACGTTGTCGTTGTAGTCGTTGTAGTCGTCGACGTCGTAGTCGTCGTCGTTGTAGTCGTCGTT *****************************************************************************.((........................................))....***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
...........................................................................AGTCGTCGATGTTGCAGTCGTAG...................................................................................	23	3	2	0.50	1	1	0
.................................AGTCGGCGTGCGCCGCGTAG................................................................................................................................	20	3	8	0.13	1	0	1
........................................................................................................................................................TCGTAGTCGTCGTCGT.............	16	0	20	0.10	2	0	2

Species	Coordinate	ID	Alignment
droSim2	x:3498523-3498703 -	dsi_16930	C--G-ATC--CTCACCAGGAGCT------------GCAGTTCGAGCAGCATCAGCCGCACCAGTCG------CATCAG---CAGCATCAGCAGCAGCA---------ACATC---AG---CAGCAACAACAT---CAGCAGCAACATCAGCAGC---AGCAGCAGCT---GCAACAGC------A-AC---ATCAGCAACATCAGCAGCTGCAGCATCAGCAGCAGC------AACATCAGCAGCAA
droSec2	scaffold_4:2908035-2908221 +		C--G-ATT--CGCACCAGGAGCT------------GCAGTTCGAGCAGCATCAGCCGCACCAGTCGCATCAGCAACATCAGCAGCAGCAGCTGCAGCA---------TCAGC---AG---CAG---CAGCAG---CTGCAGCATCAGCAGCAGCAGCAACATCAGCAGCAACAAAATCAGCAGCA-GCAGC---A------G------CTACAACAGCAACATCAGC------AGCAGCAACAGCTG
dm3	chrX:9649001-9649182 +		T--GATGC--TTCACCAGCAGCA------------GCAGCAGCAGCAACATCAGCAGCAACAGCAG------CAACAG---CAGCAGCAGCAGCATCA---------ACAGC---AG---CAA---CAGCAGCAACATCAACAGCAGCAGCAGC---AACATCAGCA---GCAGCAGCAGCAACA-CCACC---A------G------CAACAGCAGCAGCATCATCACCAGCAATTTGGCCAGCAG
droEre2	scaffold_4784:3586560-3586743 +		C--C-AGC--AGCAGCATCAGCA------------GCAGCAGCAGCAGCATCAACAGCAGCAGCAG------CAGCAA---CAGCAGCAACAGCAGCA---------ACAGC---AG---CAGCAGCAACAA---CAGCAACAGCAGCAGCAGC---AACAGCAGCAGCATCAACAGC------A-AC---AGCAGCAACAGCAACAGCAGCAGCAGTTGCAGCCAC------AACAGCAGCTGCAG
droYak3	X:19447744-19447917 -		C------------AGCAGCAGCA------------GCAGCAGCAGCAACAGCAACAGCAGCAGCAG------CAGCAG---CAGCAGCAGCAGCAGCA---------ACAGC---AG---CAACAACAGCAG---CAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA-GCAGC---A------G------CAACAGCAGCAGCAGCAGC------AGCAGCAGCAACAA
droEug1	scf7180000409474:908168-908335 +		CAGG-AGT--ACCAGCAGCATCA------------GCAGCACCAGCA---------------GCAC------CAACAG---CATCAGCAGCACCAGCA---------ACAGC---AGCATCAG---CAGCAT---CAACAGCATCAGCAACATCAGCAACATCAGCAGCATCAGCAACACCAGCA-GCATC---A------G------CAACATCAGCAGCACCAGC------AGCATCAGCAGCAG
droBia1	scf7180000302428:5893203-5893378 +		T--G-ATT----CAGCAGCAACA------------ACAGCAGCAGCA---GCAGCAACAACAGCAG------CAGCAG---CAGCAACAACAGCAGCA---------GCAGC---AGCAGC---AACAACAG---CAGCAACAACAGCAGCAGC---AACAACAGCA---GCAGCAGC------A-AC---AACAGCTGCAACAACAACAACAGTTGCAGCAGCAGC------AACAACAGCAGCAG
droTak1	scf7180000414445:283373-283550 +		A--C-ATC--AGCAGCAGCAGCA------------GCAAAATATGCATCATCACC---AACAGCAG------CAGCAG---CACCAACAACAGCAGCA---------GCAGC---ATATGC---AACAGCAG---CAGCAACACCAACAGCAGCAGCAACAACATCAACAGCAGCAGCAGCAACA-TCAAC---A------G------CAGCAGCAGCAGCATCAAC------AACAGCAGCAGCAA
droEle1	scf7180000491232:353999-354185 +		G--C-AGC--ATCAGCAGCACCA------------GCAGCACCAGCAGCATCAACAGCATCAGCAG------CATCAA---CAACATCAGCAGCATCAGCAACACCAGCAAC---AC---CAG---CAGCAG---CAACAGCACCAACAGCAGCATCAGCAACACCAGCAGCAGCACCAGCAACA-TCAGC---A------G------CATCAACAGCAGCATCAGC------AACATCAGCAGCAT
droRho1	scf7180000779334:925444-925618 +		C--G-AT--------CAGGATCT------------GCAGTTCGAACAACATCAGCCACTTCAGCAG------CATCAG---CAGCAGCAGCAACATCA---------GCAGC---AG---CAG---CAGCAGCAGCATCAGCAGCAGCAGCAGC---AACATCAGCAGCAGCAGCAACATCAGCA-GCAGC---A------G---CAACATCAGCAGCATCAGCAGC------AACATCTGCAATTT
droFic1	scf7180000454044:491139-491316 -		G--G-ATT--ACCAGCAGCATCA------------GCAGCACCAACAGCATCAGCAGCACCAGCAA------CATCAG---CAGCAGCAGCAGCAGCA---------ACATC---AG---CAGCAACAGCAG------CAGCATCAACAACATCAGCAACATCAACAGCACCAGCAACATCAGCA-GCATC---A------G------CAACACCAGCAGCATCAGC------AACACCAGCAGCAT
droKik1	scf7180000302809:421-602 +		G--C-AGC--AGCACCAGCAGCA------------GCAGCACCAGCAGCAGCAGCTCCAGCAGCAG------CAGCAC---CAGCAGCAGCACCACCA---------GCAGC---AG---CAGCACCAGCAG---CAGCAGCACCAGCAGCAGC---AGCACCAGCA---GCAGCAGC------ACAC---AGCAGCAGCAGCAACAGCAGCAGCACCAACAGCAGC------AAAAGCACCAGCCG
droAna3	scaffold_13248:2270619-2270796 -	dan_4064	G--C-AGC--AGCAGCCACAGCA------------GCAACA---GCAGCAGCAGC---AACAGCAA------CAGCAA---CAGCAACAGCAGCAGCA---------ACAGC---AG---CAGCAACAGCAG------CAGCAGCCACAGCAGCAGCAACAGCAGCAACGACAGCAGCAGCAGCA-ACGTC---A------G------CAGCAGCAGCAACGACAACAACAGCAAGCAGTGCAGCAA
droBip1	scf7180000396423:460745-460918 +		G----ATT--ATCAGCAGCATCA------------GCAGCACCAACAACATCAGC---ACCAGCAG------CATCAG---CAGCACCAGCAACATCA---------ACAGC---AT---CAG---CAGCAC---CAGCAGCATCAACAGCATCAGCAGCACCAGCAGCACCAGCAACATCAACA-GCATC---A------G------CAGCACCAGCAGCATCAAC------AGCATCAGCAGCAA
dp5	XR_group6:12701976-12702156 +		C--C-AGC--AACAGCAGCAACA------------GCAGCATCAGCAGCAGAAGCAGCAGCAGCAA------CAGCAG---CAACAGCAGCAGCAGCA---------GAAGC---AG---CAGCAGCAACAG---CAGCAACAGCAGCAGC------AACAGCAGCAGCAGCAACAGC------A-AC---AACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC------AACAGCAGCAGCAA
droPer2	scaffold_7033:715-894 +		C--C-GGC--CG-AGGAGGACGA------------GGGCTCCGAGCAGCAGCAGCAGCAGCAGCAG------CAGCAG---CACTAACATCAGCAGCC---------GCAGC---AGCAGC---AGCAGCAG---CAGCACCAACATCAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCACCAACA-TCAGC---A------G------CGCCAGCAGCAGCAGCAGC------AGCAACAGCAGCAG
droWil2	scf2_1100000004949:1100797-1100977 +		C--G-ATG--CACAGCAACAGCA------------GCAGCAGCAGCAGCAACAGCAGCAGCAGCAG------CAGCAG---CAGCAGCAGCAGCAGCA---------GCAGC---AG---CAGCAACAACAA---CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA-ACAAC---A------A------CAACAACATCAGCAACAGC------AACAGCAACAACAA
droVir3	scaffold_13049:14891840-14892021 -		C--C-AGC--TACAACAAT--CTGACGTCGCCAGCACTGGGCGCACAGCAGCA---------GCAG------CAGCAG---CAACAGCAGCAGCAACA---------ACAGCAGCAG---CAA---CAACAG---CAACAGCTGCAACAACAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCA-ACAGC---A------G------CAACAGCAGCAGCAGCAGC------AACAACAGCAGCAA
droMoj3	scaffold_6473:11064640-11064823 -		G--C-AGC--AGCAGCAGCAGCA------------GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG------CAGCAG---CAGCAGCAGCAGCAGCA---------ACAGC---AG---CAGCAGCAACAG---CAGCAGCAGCAACAGCAGC---AGCAGCAACAGCAGCAGCAGC------A-AC---AGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC------AACAACAGCAGCAA
droGri2	scaffold_588:927-1109 -		C--G-CTCTGGCCAGCAGCAGCA------------GCAGCAGCATCAGCAGCAGCAGCATCAGCAG------CAGCAG---CATCAGCAGCAGCAGCA---------TCAGC---AGCAGCAG---CATCAG---CAGCAGCAGCATCAGCAGCAGCAGCATCAGCAGCAGCAGCATCAGCAGCA-GCAGC---A------G------CAGCAGCAGCAGCATCAGC------AGCATCAGCAGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

C--G-ATC--CTCACCAGGAGCT------------GCAGTTCGAGCAGCATCAGCCGCACCAGTCG------CATCAG---CAGCATCAGCAGCAGCA---------ACATC---AG---CAGCAACAACAT---CAGCAGCAACATCAGCAGC---AGCAGCAGCT---GCAACAGC------A-AC---ATCAGCAACATCAGCAGCTGCAGCATCAGCAGCAGC------AACATCAGCAGCAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................GCT------------GCAGTTCGAGCA........................................................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................GCT------------GCAGTTCGAGCAGT......................................................................................................................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................AACAACAT---CAGCAGCAACA.....................................................................................................	19	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CAGCAACAACAT---CAGCA...........................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................GCAACATCAGCAGC---AGCA......................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................AG---CAGCATCAGCAGCAGC......................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

C--G-ATT--CGCACCAGGAGCT------------GCAGTTCGAGCAGCATCAGCCGCACCAGTCGCATCAGCAACATCAGCAGCAGCAGCTGCAGCA---------TCAGC---AG---CAG---CAGCAG---CTGCAGCATCAGCAGCAGCAGCAACATCAGCAGCAACAAAATCAGCAGCA-GCAGC---A------G------CTACAACAGCAACATCAGC------AGCAGCAACAGCTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................GCAGCA---------TCAGC---AG---CAG---CAGCAG---C...............................................................................................................	23	10	0.10	1	0	0	1	0
.........................................................................................................................................................................................................................CAACATCAGC------AGCAGCAACAG...	21	11	0.09	1	0	0	0	1
........................................................................................................................................................GCAGCAACATCAGCAGCAAC...........................................................................	20	13	0.08	1	0	0	1	0
........................................................................................................................................................................................................................GCAACATCAGC------AGCAGCAACA....	21	16	0.06	1	0	0	1	0
...........................................................................................................................................................................................................................ACATCAGC------AGCAGCAACA....	18	20	0.05	1	1	0	0	0
............................................................................................................................................................................................................................CATCAGC------AGCAGCAACAGC..	19	20	0.05	1	0	0	1	0
.......................................................................................................................................................................................................................AGCAACATCAGC------AGCAGCAA......	20	20	0.05	1	0	0	0	1

dm3

T--GATGC--TTCACCAGCAGCA------------GCAGCAGCAGCAACATCAGCAGCAACAGCAG------CAACAG---CAGCAGCAGCAGCATCA---------ACAGC---AG---CAA---CAGCAGCAACATCAACAGCAGCAGCAGC---AACATCAGCA---GCAGCAGCAGCAACA-CCACC---A------G------CAACAGCAGCAGCATCATCACCAGCAATTTGGCCAGCAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................CAGCAACATCAGCAGCAACAGCAG------CA.............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................CAGCATCA---------ACAGC---AG---CAA---CAGC.....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................ATCAGCAGCAACAGCAG------C..............................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CA------------GCAGCAGCAGCAACATCA..................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCAACATCAGCAGCAAC..........................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................GCAACAGCAG------CAACAG---CAGCAGC...............................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGCAGC---AACATCAGCA---GCAGCAGC.....................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droEre2

C--C-AGC--AGCAGCATCAGCA------------GCAGCAGCAGCAGCATCAACAGCAGCAGCAG------CAGCAA---CAGCAGCAACAGCAGCA---------ACAGC---AG---CAGCAGCAACAA---CAGCAACAGCAGCAGCAGC---AACAGCAGCAGCATCAACAGC------A-AC---AGCAGCAACAGCAACAGCAGCAGCAGTTGCAGCCAC------AACAGCAGCTGCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................AACAGCAACAGCAGCAGCAGTT............................	22	2	0.50	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................ACAGCAACAGCAGCAGCAGTT............................	21	2	0.50	1	0	0	0	0	0	1	0
...................................................................................................................................................................AGCAGCATCAACAGC------A-AC---A.......................................................	19	3	0.33	1	0	0	0	0	1	0	0
............................................GCAGCATCAACAGCAGCAGCAG------CAGC...........................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0
............................................................................................GCAGCA---------ACAGC---AG---CAGCAGC........................................................................................................................	20	20	0.15	3	1	0	0	0	0	2	0
......GC--AGCAGCATCAGCA------------GCAGC...............................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0	0
........................................................................................AACAGCAGCA---------ACAGC---AG---CA.............................................................................................................................	19	20	0.10	2	0	0	0	2	0	0	0
....................................................................................CAGCAACAGCAGCA---------ACAGC---AG---CA.............................................................................................................................	23	20	0.10	2	1	0	0	0	1	0	0
.....................................................................................................................................................................................................AACAGCAACAGCAGCAGC................................	18	20	0.10	2	0	0	0	0	0	2	0
..........................................................................................................................GCAGCAACAA---CAGCAACAGCAGCA..................................................................................................	24	12	0.08	1	0	0	0	0	0	1	0
......................A------------GCAGCAGCAGCAGCATCAACA...............................................................................................................................................................................................	22	12	0.08	1	1	0	0	0	0	0	0
................................................CATCAACAGCAGCAGCAG------CAGC...........................................................................................................................................................................	22	16	0.06	1	0	0	0	1	0	0	0
............................................................................................................................AGCAACAA---CAGCAACAGCAGCA..................................................................................................	22	16	0.06	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................AGCAACAGCAGCAGCAGT.............................	18	19	0.05	1	1	0	0	0	0	0	0
.......C--AGCAGCATCAGCA------------GCAGCAGC............................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
.............................................................................................................................GCAACAA---CAGCAACAGCAGC...................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
.................................................................G------CAGCAA---CAGCAGCAACAGCAGCA---------............................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0
.....................................................................................AGCAACAGCAGCA---------ACAGC---AG---CAGCAGC........................................................................................................................	27	20	0.05	1	1	0	0	0	0	0	0
.....................................................................................AGCAACAGCAGCA---------ACAGC---A...................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
...............................................................................................................................................................................AGC------A-AC---AGCAGCAACAGCA...........................................	19	20	0.05	1	0	0	0	0	1	0	0
................................................................................................................................ACAA---CAGCAACAGCAGCAGC................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
............................................................................................................................................ACAGCAGCAGCAGC---AACAGC....................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................CAACAGCAGCAGCAGC---AACAGCA...................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................AACAGCAGCAGCAGC---AACAGCAGCA................................................................................	25	20	0.05	1	0	0	0	1	0	0	0
.................................................ATCAACAGCAGCAGCAG------CA.............................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
...........................................................GCAGCAG------CAGCAA---CAGCA.................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
..................................................................................AGCAGCAACAGCAGCA---------ACAGC---AG---CAG............................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................................................................GCAGCAGC---AACAGCAGCAGCA.............................................................................	21	20	0.05	1	0	0	0	1	0	0	0
..............................................................................................................................CAACAA---CAGCAACAGCAGCAG.................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
..............................................................................................AGCA---------ACAGC---AG---CAGCAGCA.......................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
................................................CATCAACAGCAGCAGCAG------CA.............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................AC---AGCAGCAACAGCAACAGC......................................	20	20	0.05	1	0	1	0	0	0	0	0
.............................................................AGCAG------CAGCAA---CAGCAGCA..............................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
..................................................................................................................................................GCAGCAGC---AACAGCAGCAGC..............................................................................	20	20	0.05	1	1	0	0	0	0	0	0
...........................................................................................................................................AACAGCAGCAGCAGC---AACAGCAGC.................................................................................	24	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................CAACAA---CAGCAACAGCAGCA..................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
.......................................................AGCAGCAGCAG------CAGCAA---CAGCAGC...............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0
...........GCAGCATCAGCA------------GCAGCAGCA...........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
............................................................................................GCAGCA---------ACAGC---AG---CAGCAGCAA......................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0
...............CATCAGCA------------GCAGCAGCAGCAGCA.....................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0
..............GCATCAGCA------------GCAGCAGCAGCA........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
...............................................................................................GCA---------ACAGC---AG---CAGCAGCAACA....................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.......................................................................................................................................CAGCAACAGCAGCAGCAGC---..........................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................................CAACAA---CAGCAACAGCAGC...................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
.........................................................................................ACAGCAGCA---------ACAGC---AG---CA.............................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0
........................................................................CAGCAA---CAGCAGCAACAGCAGCA---------............................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................CAGCAGCAGCAGC---AACAGC....................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
.............................................................................................CAGCA---------ACAGC---AG---CAGCAGCAAC.....................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0
.................................................................................................................................CAA---CAGCAACAGCAGCAGCAGC---A.........................................................................................	23	20	0.05	1	0	0	0	1	0	0	0
......GC--AGCAGCATCAGCA------------GCAGCAGC............................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0

droYak3

C------------AGCAGCAGCA------------GCAGCAGCAGCAACAGCAACAGCAGCAGCAG------CAGCAG---CAGCAGCAGCAGCAGCA---------ACAGC---AG---CAACAACAGCAG---CAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA-GCAGC---A------G------CAACAGCAGCAGCAGCAGC------AGCAGCAGCAACAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGCAGCAGC...........................................................................	28	20	0.75	15	0	0	0	0	0	0	0	0	0	0	15
......................................................CAGCAGCAGCAG------CAGCAG---CAGCAGCAGC............................................................................................................................................................	28	20	0.75	15	0	0	0	0	0	0	0	0	0	0	15
....................................................................................................................................................................................CAGCA-GCAGC---A------G------CAACAGCAGCAGC..........................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6
.........................................................................................................................................GCAGCAACAGCAGCAGCAGCAGCA......................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................GCA------------GCAGCAGCAGCAACAGCAAC................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................AGCAGCA---------ACAGC---AG---CAACAACAGCAG---C...............................................................................................................	27	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................AG---CAACAACAGCAG---CAGCAGCAACAGC...................................................................................................	27	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................GCAG---CAGCAGCAGCAGCAGCA---------AC..........................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................AACAGCAACAGCAGCAGCAG------CAGCAG---......................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................GCAGCAGCAACAGCAACAGCAGCAGCA......................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AGCAGCA-GCAGC---A------G------CAACAGCAGCA............................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCAGCAGCAGC------AGCAGCAGCAAC..	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GC---A------G------CAACAGCAGCAGCAGCAGC------..............	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GCAGCAGCAGCA-GCAGC---A------G------CAACAGC................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................ACAGCAG---CAGCAGCAACAGCAGCA...............................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................ACAGCAACAGCAGCAGCAG------C..............................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................GCAACAGCAACAGCAGCAGCAG------CAGCA..........................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............GCAGCAGCA------------GCAGCAGCAGCAACAGC...................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GC---A------G------CAACAGCAGCAGCAGCAGC------A.............	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..............GCAGCAGCA------------GCAGCAGCAGCAAC......................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................G---CAGCAGCAACAGCAGCAG..............................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................A---------ACAGC---AG---CAACAACAGCAG---CAGC............................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................AGCAGCAGCAGCAGCA---------ACAGC---AG---CA.............................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................AGCAGCAACAGCAACAGCAGC..........................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................GCAG---CAGCAGCAGCAGCAGCA---------ACAGC---....................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................ACAGCAACAGCAGCAGCAG------CAGCA..........................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GCAGCAGCAGCA-GCAGC---A------G------CAAC...................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CAGG-AGT--ACCAGCAGCATCA------------GCAGCACCAGCA---------------GCAC------CAACAG---CATCAGCAGCACCAGCA---------ACAGC---AGCATCAG---CAGCAT---CAACAGCATCAGCAACATCAGCAACATCAGCAGCATCAGCAACACCAGCA-GCATC---A------G------CAACATCAGCAGCACCAGC------AGCATCAGCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T--G-ATT----CAGCAGCAACA------------ACAGCAGCAGCA---GCAGCAACAACAGCAG------CAGCAG---CAGCAACAACAGCAGCA---------GCAGC---AGCAGC---AACAACAG---CAGCAACAACAGCAGCAGC---AACAACAGCA---GCAGCAGC------A-AC---AACAGCTGCAACAACAACAACAGTTGCAGCAGCAGC------AACAACAGCAGCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

A--C-ATC--AGCAGCAGCAGCA------------GCAAAATATGCATCATCACC---AACAGCAG------CAGCAG---CACCAACAACAGCAGCA---------GCAGC---ATATGC---AACAGCAG---CAGCAACACCAACAGCAGCAGCAACAACATCAACAGCAGCAGCAGCAACA-TCAAC---A------G------CAGCAGCAGCAGCATCAAC------AACAGCAGCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

G--C-AGC--ATCAGCAGCACCA------------GCAGCACCAGCAGCATCAACAGCATCAGCAG------CATCAA---CAACATCAGCAGCATCAGCAACACCAGCAAC---AC---CAG---CAGCAG---CAACAGCACCAACAGCAGCATCAGCAACACCAGCAGCAGCACCAGCAACA-TCAGC---A------G------CATCAACAGCAGCATCAGC------AACATCAGCAGCAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C--G-AT--------CAGGATCT------------GCAGTTCGAACAACATCAGCCACTTCAGCAG------CATCAG---CAGCAGCAGCAACATCA---------GCAGC---AG---CAG---CAGCAGCAGCATCAGCAGCAGCAGCAGC---AACATCAGCAGCAGCAGCAACATCAGCA-GCAGC---A------G---CAACATCAGCAGCATCAGCAGC------AACATCTGCAATTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G--G-ATT--ACCAGCAGCATCA------------GCAGCACCAACAGCATCAGCAGCACCAGCAA------CATCAG---CAGCAGCAGCAGCAGCA---------ACATC---AG---CAGCAACAGCAG------CAGCATCAACAACATCAGCAACATCAACAGCACCAGCAACATCAGCA-GCATC---A------G------CAACACCAGCAGCATCAGC------AACACCAGCAGCAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

G--C-AGC--AGCACCAGCAGCA------------GCAGCACCAGCAGCAGCAGCTCCAGCAGCAG------CAGCAC---CAGCAGCAGCACCACCA---------GCAGC---AG---CAGCACCAGCAG---CAGCAGCACCAGCAGCAGC---AGCACCAGCA---GCAGCAGC------ACAC---AGCAGCAGCAGCAACAGCAGCAGCACCAACAGCAGC------AAAAGCACCAGCCG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

G--C-AGC--AGCAGCCACAGCA------------GCAACA---GCAGCAGCAGC---AACAGCAA------CAGCAA---CAGCAACAGCAGCAGCA---------ACAGC---AG---CAGCAACAGCAG------CAGCAGCCACAGCAGCAGCAACAGCAGCAACGACAGCAGCAGCAGCA-ACGTC---A------G------CAGCAGCAGCAACGACAACAACAGCAAGCAGTGCAGCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................ACAGCAG------CAGCAGCCACAGC................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................CAGCAACAGCAG------CAGCAGCCAC...................................................................................................	22	2	0.50	1	0	1	0	0	0	0
............................................................................................GCAGCA---------ACAGC---AG---CAGCAACAGCAG------CAGC.........................................................................................................	29	6	0.17	1	0	1	0	0	0	0
...................................................................................................................................G------CAGCAGCCACAGCAGCAGC..........................................................................................	20	7	0.14	1	0	1	0	0	0	0
....................................................................................................................G---CAGCAACAGCAG------CAGCAGCC.....................................................................................................	21	16	0.13	2	0	1	1	0	0	0
G--C-AGC--AGCAGCCACAGCA------------GC..................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	1
................................................................................................................................GCAG------CAGCAGCCACAGCAGC.............................................................................................	20	8	0.13	1	0	0	0	0	0	1
......................A------------GCAACA---GCAGCAGCAGC---AACAGCA......................................................................................................................................................................................	25	20	0.10	2	0	1	1	0	0	0
.............................................................................................CAGCA---------ACAGC---AG---CAGCAACAGCAG------CA...........................................................................................................	26	13	0.08	1	0	1	0	0	0	0
.................................................................................CAGCAACAGCAGCAGCA---------ACAGC---AG---CA.............................................................................................................................	26	13	0.08	1	0	1	0	0	0	0
..........................................................................GCAA---CAGCAACAGCAGCAGCA---------ACAGC---....................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0
................................................................AA------CAGCAA---CAGCAACAGCAGCAGCA---------AC..........................................................................................................................................	27	15	0.07	1	0	0	0	0	0	1
....................................................................................CAACAGCAGCAGCA---------ACAGC---AG---CAGC...........................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
......................................................C---AACAGCAA------CAGCAA---CAGCAACAGCAGC.........................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
........................................A---GCAGCAGCAGC---AACAGCAA------CAGC...........................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
............................................................................................GCAGCA---------ACAGC---AG---CAGCAACAGCAG------A............................................................................................................	26	20	0.05	1	1	0	0	0	0	0
........................................................................CAGCAA---CAGCAACAGCAGCA........................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...........................................................................CAA---CAGCAACAGCAGCAGCA---------............................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
............................................................................AA---CAGCAACAGCAGCAGCA---------ACAGC---....................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................AGCAACAGCAG------CAGCAGCC.....................................................................................................	19	20	0.05	1	0	0	0	0	0	1
.............................................................AGCAA------CAGCAA---CAGCAACAGC............................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
..............................................................................................AGCA---------ACAGC---AG---CAGCAACA.......................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...........................................................ACAGCAA------CAGCAA---CAGCAAC...............................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
................................................................................................CA---------ACAGC---AG---CAGCAACAGCAG------CAGC.........................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................A---------ACAGC---AG---CAGCAACAGCA....................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
............................................................................................GCAGCA---------ACAGC---AG---CAGCAACAGC.....................................................................................................................	23	20	0.05	1	0	1	0	0	0	0

droBip1

G----ATT--ATCAGCAGCATCA------------GCAGCACCAACAACATCAGC---ACCAGCAG------CATCAG---CAGCACCAGCAACATCA---------ACAGC---AT---CAG---CAGCAC---CAGCAGCATCAACAGCATCAGCAGCACCAGCAGCACCAGCAACATCAACA-GCATC---A------G------CAGCACCAGCAGCATCAAC------AGCATCAGCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

C--C-AGC--AACAGCAGCAACA------------GCAGCATCAGCAGCAGAAGCAGCAGCAGCAA------CAGCAG---CAACAGCAGCAGCAGCA---------GAAGC---AG---CAGCAGCAACAG---CAGCAACAGCAGCAGC------AACAGCAGCAGCAGCAACAGC------A-AC---AACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC------AACAGCAGCAGCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................CA------------GCAGCATCAGCAGCAGAAGC................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................CATCAGCAGCAGAAGCAGC.............................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...........ACAGCAGCAACA------------GCAGCATC............................................................................................................................................................................................................	20	8	0.13	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................A-AC---AACAGCAGCAGCAACAGC......................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................G---CAGCAACAGCAGCAGC------AACAGC....................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCAGCAACAGCAGCAGC------AACAGC........	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................................GCAGCAGCAA------CAGCAG---CAACAGC...............................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................G---CAGCAGCAACAG---CAGCAAC.........................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AGCAACAGC------A-AC---AACAGCAGC...............................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AGCAACAGCAGCAGCAACAGCAGCAGC------..............	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................AACAGCAGCAGCAACAGCAGCA......................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................AG---CAGCAACAGCAGCAGC------AACAGC....................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................C------A-AC---AACAGCAGCAGCAACAGCAG....................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AGCAACAGCAGCAGCAACAGCAGC.......................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................AGCAACAGCAGCAGC------AACAGCAGC.................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................GCAGCAACAGCAGCAGC------AACAGCAGCA....	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACAGC------A-AC---AACAGCAGCAGCA...........................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACAGC..........................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................G---CAGCAGCAACAG---CAGCAACAGC......................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................CAGCAGCAA------CAGCAG---CAACAGCA..............................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................GCAGCAGCAA------CAGCAG---CAAC..................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCAGCAACAGC------A-AC---AACAGCAGCA..............................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................GCAACAGCAGCAGC------AACAGCAGCAGC..............................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................CAGCAGCAGCAGCAACAGC------...............................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................AGCAACAGCAGCAGC------AACAGCAGCAGC..	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................................................................................CAGCAGCAACAG---CAGCAACA........................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACA............................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................CAGCAGCAACAG---CAGCAACAGCA.....................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCAGCAACAGCAGCAGC------AACA..........	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................AGCAGCAACAGCAGCAGCAACAGC..........................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................AACAGCAGCAGC------AACAGCAGCA................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AACAGCAGCAGC------AACAGCAGCA....	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................AGCAGCAGCAA------CAGCAG---CAACAGCAGCA...........................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGCAACAGCAGCAGCAACAGCAGCA......................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......C--AACAGCAGCAACA------------GCAGC...............................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................ACAGCAGCAGCAACAGCAGC.......................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AGC------A-AC---AACAGCAGCAGCAA..........................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................CAGCAGCAA------CAGCAG---CAACA.................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
.....AGC--AACAGCAGCAACA------------GCAG................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................GCAGC------AACAGCAGCAGCAGCA..........................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................GCAACAGCAGCAGCAACAGCAGCAGC------..............	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................................................CAGCAACAGCAGCAGC------AACAGCAGCA....	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................G---CAGCAACAGCAGCAGC------AACA......................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................GCAGC------AACAGCAGCAGCAGCAACAGC------A-.............................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................CAGCAACAGCAGCAGC------AACAGCAGCA................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................AG---CAGCAGCAACAG---CAGCAACAGCAGCA..................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AGCAACAGCAGCAGC------AACAGCAGC.....	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................G---CAGCAACAGCAGCAGC------AACAGCAGCA................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................AGCAACAGCAGCAGC------AACAGCAGCAGC..............................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................C------AACAGCAGCAGCAGCAACAGC------...............................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CAGCAACAGCAGCAGCAACAGCAGCA......................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................ACAGCAGCAGC------AACAGCAGC.................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................AGCAGCAGCAACAGC------A-AC---AACA....................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GCAACAGC------A-AC---AACAGCAGCAGC............................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................GCAGCAGCAACAGC------A-AC---AACAGC..................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

C--C-GGC--CG-AGGAGGACGA------------GGGCTCCGAGCAGCAGCAGCAGCAGCAGCAG------CAGCAG---CACTAACATCAGCAGCC---------GCAGC---AGCAGC---AGCAGCAG---CAGCACCAACATCAGCAGCCGCAGCAGCAGCAGCAGCAGCAGCACCAACA-TCAGC---A------G------CGCCAGCAGCAGCAGCAGC------AGCAACAGCAGCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................CCAACATCAGCAGCCGCAGCA......................................................................................	21	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................ACCAACATCAGCAGCCGCAGCAGCA...................................................................................	25	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................AGCACCAACATCAGCAGCCG...........................................................................................	20	2	0.50	1	0	1	0	0	0	0
.............................................................................................................................................CAACATCAGCAGCCGCAGCAG.....................................................................................	21	2	0.50	1	0	1	0	0	0	0
...................................................................................................................................................................................CCAACA-TCAGC---A------G------CGCCAGCA...............................	21	2	0.50	1	0	1	0	0	0	0
.............................................................................................................................................CAACATCAGCAGCCGCAGCAGCAGC.................................................................................	25	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................ACCAACATCAGCAGCCGCAG........................................................................................	20	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................AACATCAGCAGCCGCAGCAG.....................................................................................	20	3	0.33	1	0	1	0	0	0	0
.....................................................................................AACATCAGCAGCC---------GCAGC---AG..................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0
..........................................................................................................................................................................................TCAGC---A------G------CGCCAGCAGCAGCA.........................	21	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................................................................................TCAGC---A------G------CGCCAGCAGCAGCAG........................	22	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................CA-TCAGC---A------G------CGCCAGCAG..............................	18	6	0.17	1	0	1	0	0	0	0
..................................................................................................................................................................................................A------G------CGCCAGCAGCAGCAGCAGC------AGCA..........	25	9	0.11	1	0	1	0	0	0	0
.........................................CGAGCAGCAGCAGCAGCAGCAG........................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................CAGCCGCAGCAGCAGCAGC..............................................................................	19	20	0.05	1	0	1	0	0	0	0
.............................................................................................CAGCC---------GCAGC---AGCAGC---AGC........................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droWil2

C--G-ATG--CACAGCAACAGCA------------GCAGCAGCAGCAGCAACAGCAGCAGCAGCAG------CAGCAG---CAGCAGCAGCAGCAGCA---------GCAGC---AG---CAGCAACAACAA---CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA-ACAAC---A------A------CAACAACATCAGCAACAGC------AACAGCAACAACAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....ATG--CACAGCAACAGCA------------GCAGC...............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................AG------CAGCAG---CAGCAGCAGCA...........................................................................................................................................................	19	20	0.30	6	0	0	0	6	0
.....................................................................................................................................................................................................................ACATCAGCAACAGC------AACAGCA.......	21	19	0.11	2	0	0	0	2	0
..........CACAGCAACAGCA------------GCAGCAGCAGC.........................................................................................................................................................................................................	24	10	0.10	1	0	0	0	1	0
...........................................AGCAGCAACAGCAGCAGCAGCAG------CA.............................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0
..................................................................................................................................................................................................................ACAACATCAGCAACAGC------AA............	19	14	0.07	1	0	1	0	0	0
......................................................................................................................................................................................................................CATCAGCAACAGC------AACAGCAAC.....	22	18	0.06	1	0	0	0	1	0
...................................GCAGCAGCAGCAGCAACAGC................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................AACAACAACAACAACAACAA............................................................................	20	20	0.05	1	0	1	0	0	0
..................CAGCA------------GCAGCAGCAGCAGCAACAG.................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..................................................ACAGCAGCAGCAGCAG------CAGCAG---CA....................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................CATCAGCAACAGC------AACAGCA.......	20	20	0.05	1	0	0	0	1	0
...............................................................CAG------CAGCAG---CAGCAGCAGC............................................................................................................................................................	19	20	0.05	1	1	0	0	0	0
..........................................................................................................................................................................................ACAAC---A------A------CAACAACATCAGCA.........................	21	20	0.05	1	0	0	0	1	0
............................................................................................................CAGC---AG---CAGCAACAACAA---CA..............................................................................................................	20	20	0.05	1	0	1	0	0	0
.............AGCAACAGCA------------GCAGCAGCAGC.........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................GCAACAGCAGCAGCAGCAG------C..............................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1

droVir3

C--C-AGC--TACAACAAT--CTGACGTCGCCAGCACTGGGCGCACAGCAGCA---------GCAG------CAGCAG---CAACAGCAGCAGCAACA---------ACAGCAGCAG---CAA---CAACAG---CAACAGCTGCAACAACAGCAGCAGCAACAGCAGCAACAGCAGCAGCAGCA-ACAGC---A------G------CAACAGCAGCAGCAGCAGC------AACAACAGCAGCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............AACAAT--CTGACGTCGCCAGCACC.................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TGCAACAACAGCAGCAGCAACAGCAGCA.............................................................................	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CAACAG---CAACAGCTGCAACAACA...............................................................................................	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GCAGCA---------GCAG------CAGCAG---CAAC..................................................................................................................................................................	20	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GCAGCAACA---------ACAGCAGCAG---CAA---CAACAG---C...............................................................................................................	29	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGCAACAGCAGCAGCAGCA-ACA..........................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................A---------GCAG------CAGCAG---CAACAGCA..............................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GCAGCAACA---------ACAGCAGCAG---C..............................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................GCTGCAACAACAGCAGCA.........................................................................................	18	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CAGCAGCAGCAACA---------ACAGCAGCAG---C..............................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAACAGCAGCAACAGCAGC.....................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAGCAACAGCAGCAGCAGC...............................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................G---CAACAGCAGCAGCAACA---------ACAGC.......................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................AGCAACA---------ACAGCAGCAG---C..............................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................ACAGCAGCAG---CAA---CAACAG---CAA.............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AACAGCAGCAGCAGCA-ACAGC---A------..............................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................AGCAGCAACA---------ACAGCAGCAG---C..............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................ACAGCAGCA---------GCAG------CAGCAG---CAAC..................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AACA---------ACAGCAGCAG---CAA---CAACAG---CAAC............................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GC---A------G------CAACAGCAGCAGCAGCAGC------AACA..........	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CA---------GCAG------CAGCAG---CAACAGCAGCAGCA........................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAACAGCAGCAGCAGCA-ACAGC---A------G------.......................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GCAGCAGCAGCA-ACAGC---A------G------CAAC...................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................ACAGCAGCAGCAACA---------ACA.........................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................AGCAACAGCAGCAACAGCA.......................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AACAGCAGCAGCAGCA-ACA..........................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CA-ACAGC---A------G------CAACAGCAGC.............................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................ACAGCAGCAG---CAA---CAACAG---CAAC............................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................AACA---------ACAGCAGCAG---CAA---CAACAG---C...............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAACAGCAGCAGCAACA---------ACAGCA......................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................GCAGC------AACAACAGCAGCAA	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CAGCAGCA-ACAGC---A------G------CAACA..................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAACAGCAGCAGCAACA---------AC..........................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CGCACAGCAGCA---------GCAG------CAGC...........................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................CAGCA---------GCAG------CAGCAG---CAACAGCA..............................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

G--C-AGC--AGCAGCAGCAGCA------------GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG------CAGCAG---CAGCAGCAGCAGCAGCA---------ACAGC---AG---CAGCAGCAACAG---CAGCAGCAGCAACAGCAGC---AGCAGCAACAGCAGCAGCAGC------A-AC---AGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC------AACAACAGCAGCAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................................................................................................................................................GCAACAGCAGCAGC------AACAACAGCAG...	25	20	0.05	1	1	0	0	0	0	0
...C-AGC--AGCAGCAGCAGCA------------GCA.................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................GCAGCAGC------AACAACAGCAGCA.	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................AACAGCAGCAGCAACAGCA.........................	19	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................GCAGCAACAGCAGCAGC------AA............	19	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................GCAACAGCAGCAGCAACAGCAGCAGC------A.............	27	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGC------AAC...........	23	20	0.05	1	0	0	0	0	1	0
.........................................................................................GCAGCAGCA---------ACAGC---AG---CA.............................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
...............................................................................................GCA---------ACAGC---AG---CAGCAGCAACA....................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................................................................................AGCAGCAGCAGCAGCA---------ACAGC---AG---CA.............................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAAC.............................	23	20	0.05	1	0	0	0	0	1	0

droGri2

C--G-CTCTGGCCAGCAGCAGCA------------GCAGCAGCATCAGCAGCAGCAGCATCAGCAG------CAGCAG---CATCAGCAGCAGCAGCA---------TCAGC---AGCAGCAG---CATCAG---CAGCAGCAGCATCAGCAGCAGCAGCATCAGCAGCAGCAGCATCAGCAGCA-GCAGC---A------G------CAGCAGCAGCAGCATCAGC------AGCATCAGCAGCAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................ATCAGCAG------CAGCAG---CATCAGCA..............................................................................................................................................................	22	20	0.05	1	1	0
..................................................................................ATCAGCAGCAGCAGCA---------TCAGC---A...................................................................................................................................	22	20	0.05	1	1	0
...............................................................................................................................ATCAG---CAGCAGCAGCATCAGCA...............................................................................................	22	20	0.05	1	1	0
.................................................................................................A---------TCAGC---AGCAGCAG---CATCAG---CA..............................................................................................................	22	20	0.05	1	1	0
................................................................................................................................................................ATCAGCAGCAGCAGCATCAGCA.................................................................	22	20	0.05	1	1	0
.................................................................................................................................................ATCAGCAGCAGCAGCATCAGCA................................................................................	22	20	0.05	1	1	0
...........................................ATCAGCAGCAGCAGCATCAGCA......................................................................................................................................................................................	22	20	0.05	1	1	0

dsi_16930

x:3498573-3498653 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.9	-4.5