ID:

dsi_16915

 Coordinate:

3r:4317376-4317525 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-27.4 -27.2 -27.2

Flybase annnotation

CDS [3r_4317526_4317780_+]; exon [3r_4317526_4317780_+]; intron [3r_4317064_4317525_+]

No Repeatable elements found

mature
  1. dsi_1469  2l:6420692-6420706 -
  2. dsi_16915  3r:4317443-4317457 +
  3. 3r:19793643-19793657 +
  4. x:13167844-13167858 +
  5. x:17151921-17151935 -
star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGTGGCCCATTGTTAGCCAAGTGAATTATGCAAATCGCATTCCCAGCCCCAAAATAGCAGCCACAAAACAAAATTAACCCATTAAGAGTCATAGAAATGGATTTCAGAATGGCGTCTTTTGTGTTTTGTAATTCAAAGCTGAAATTAGTCTGAGATTTATTGGCGGCGATTATATGTTTTTCCCCTTTAAATTTTACAGCCTGGCGGCATTTCGGTTCAAAGGGAAAAGGCTGCCATGATGGAGCTGGT
**************************************************...(((..((((.((((((((......(((((((..(((((((....))))..)))..))))).))......))))))))........))))..)))....(((((((((..((.((.((.........)).))))..)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
...........................................................................TAACCCATTCAGAGTCCTAGC.......................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
...................................................................................................................TCTTTTGGGTCTTGTAATT.................................................................................................................... 19 2 10 0.50 5 0 5 0 0 0
.....................................................................................................................TTTTGTGTTTTGTAA...................................................................................................................... 15 0 5 0.40 2 0 0 2 0 0
...................................................................................................................TCTTTTGGGTCTTGTAAT..................................................................................................................... 18 2 15 0.20 3 0 2 0 1 0
...................................................................................................................TCTTTTGGGTCTTGTAATTG................................................................................................................... 20 3 20 0.15 3 0 3 0 0 0
............................................................................................TAGCAATGGATGTCAGA............................................................................................................................................. 17 2 14 0.14 2 0 0 0 2 0
....................................................................................................................CTTTTGAGTCTTGTAATT.................................................................................................................... 18 2 20 0.10 2 0 0 2 0 0
............................................................................................................................................................................................................................AAGGGTAAAAGCTGCCTTGAT......... 21 3 10 0.10 1 0 0 0 1 0
...........................................................................................................................................................................................TTAAATTTAACAGACTGG............................................. 18 2 11 0.09 1 0 0 0 0 1
..................................................................................................................CTCTTTTGTGTCTTGTAATTG................................................................................................................... 21 3 11 0.09 1 0 0 1 0 0
..........................................................................................................................................................................................................TGGCGGCATTGCGGT................................. 15 1 16 0.06 1 0 0 1 0 0
.........................................................................................................................................AGCTGAAATCAGTCCAAGAT............................................................................................. 20 3 17 0.06 1 0 0 0 1 0
..................................................................................................TGGATTTCCGAATGG......................................................................................................................................... 15 1 19 0.05 1 0 0 1 0 0
....................................................................................................................CTTTTGTGTCTTGTA....................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TGCACCGGGTAACAATCGGTTCACTTAATACGTTTAGCGTAAGGGTCGGGGTTTTATCGTCGGTGTTTTGTTTTAATTGGGTAATTCTCAGTATCTTTACCTAAAGTCTTACCGCAGAAAACACAAAACATTAAGTTTCGACTTTAATCAGACTCTAAATAACCGCCGCTAATATACAAAAAGGGGAAATTTAAAATGTCGGACCGCCGTAAAGCCAAGTTTCCCTTTTCCGACGGTACTACCTCGACCA
**************************************************...(((..((((.((((((((......(((((((..(((((((....))))..)))..))))).))......))))))))........))))..)))....(((((((((..((.((.((.........)).))))..)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
....................................................TTTGTCGTCGGTGTTTTGT................................................................................................................................................................................... 19 1 2 1.50 3 3 0 0 0 0
..............................CGTTTAGCGTAAGGGTCGG......................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
.....TGGGTAATAATCGGTTCACTTA............................................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................TTTTTCGTCGGTGTTTTGT................................................................................................................................................................................... 19 1 6 1.00 6 6 0 0 0 0
...................................................TTTTGTCGTCGGTGTTTTGT................................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0
...................................................TTTTTTCGTCGGTGTTTTGT................................................................................................................................................................................... 20 1 4 0.50 2 2 0 0 0 0
....................................................TTTGTCGTCGGTGTTTTGTG.................................................................................................................................................................................. 20 2 11 0.09 1 1 0 0 0 0
.......................................................................................TCAGTACCTTTACCTA................................................................................................................................................... 16 1 13 0.08 1 0 0 0 1 0
.........................................................................................................................................................................................................GACCGCGGTAAACGCAAGTT............................. 20 3 13 0.08 1 0 0 1 0 0
.......................................................................................................................................................................................................CGGGCCGCCGTAAAG.................................... 15 1 20 0.05 1 0 0 0 0 1
..............................................................CTCCTTTGTTTTAATTGGGT........................................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0

Generated: 04/24/2015 at 01:28 AM