ID:

dsi_16893

 Coordinate:

2l:3557774-3558050 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.7 -30.6 -30.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GATTTTGGCCGTTATCCTGGACCAACCATTCACTGCAGAGGCGGTTGTTCGTAAGTATTCAAAGAATTCTCATAATCAATGAGGAAAAATATTGAAAAATCAAAATCAAAATGGTGTTGGGTTATCTGCTTTTTGTTTTTCAACCTGTCAATGCCAAAATTCTGAGGGCAATGACTTCGGATTAACCTATCTTAAACATTTTAAATGAAACTACCTAAAAATACAGCTTAATTTATATGCATGCACCAAAATGATTTAAATACTTGGAAAAACAATATTTTTCTAAATGTAACGCTGGAATTGTAATATATATAATATTTATTCCAGGAGATGCATGCCAGACGGCGCCGAATAAGAACGTGTGGCTGTGTAGCCCA
********************************************************************************************************((((...(((((((((((((((((....(((.....)))...((((.((((...........)))).))))..)))).))))))).......((((...))))..................((...........))..))))))...))))....(((.(((((((((.....))))))))).))).....................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
........................................................................................................ATCAAAATGGTGTTGGGTTATCTGCTTT..................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0
..TTTTGGCCGTTATCCTGGAC................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...TTTGGCCGTTATCCTGGAC................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................GTAACGCTGGAATTGTAATATAT.................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................TCTGAGGGCAATGACTTCG...................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TATATATAATATTTATTCCAGGAG............................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................................GCGGTTGTTCGTAAGACT............................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0
.............................................................................AATAAGGACAAATATTGAAAAAA..................................................................................................................................................................................................................................................................................... 23 3 9 0.11 1 0 0 0 0 1 0 0
......................................................................................................................................................................................TAACCTATCTCAAAC.................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 1 0 0 0
....................................................................................................CAAATTCAAATTGGTGTTAGG................................................................................................................................................................................................................................................................ 21 3 12 0.08 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................ATACTTGGAACAACA....................................................................................................... 15 1 16 0.06 1 0 0 0 1 0 0 0
............................................................................................................AAATGGTGTTGGTTCAT............................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0
...........................................................................................................................................TCTACCCGTCGATGCCAA............................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1
........CCGTTATCCTCTACCA................................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

CTAAAACCGGCAATAGGACCTGGTTGGTAAGTGACGTCTCCGCCAACAAGCATTCATAAGTTTCTTAAGAGTATTAGTTACTCCTTTTTATAACTTTTTAGTTTTAGTTTTACCACAACCCAATAGACGAAAAACAAAAAGTTGGACAGTTACGGTTTTAAGACTCCCGTTACTGAAGCCTAATTGGATAGAATTTGTAAAATTTACTTTGATGGATTTTTATGTCGAATTAAATATACGTACGTGGTTTTACTAAATTTATGAACCTTTTTGTTATAAAAAGATTTACATTGCGACCTTAACATTATATATATTATAAATAAGGTCCTCTACGTACGGTCTGCCGCGGCTTATTCTTGCACACCGACACATCGGGT
******************************************************************((((...(((((((((((((((((....(((.....)))...((((.((((...........)))).))))..)))).))))))).......((((...))))..................((...........))..))))))...))))....(((.(((((((((.....))))))))).))).....................******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................................................................................................................................CATGGCGACCTGAACATT....................................................................... 18 2 1 1.00 1 0 1 0 0 0 0
..AAAACTGGCAAAAGGACCT.................................................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................AAAAGGTGGTCAGTTAGGGTT............................................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0
..........................................................................................................................................AAGGTGGTCAGTTAGGGTT............................................................................................................................................................................................................................ 19 3 20 0.25 5 5 0 0 0 0 0
...............................................................................................................................................................................................................................................GTGCGTGGATGTACTAAATT...................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0
.........................................................................................................................................AAAGGTGGTCAGTTAGGGTT............................................................................................................................................................................................................................ 20 3 6 0.17 1 1 0 0 0 0 0
.................................................................................................................................AAAAAAAAAAAGTTGGACAGGT.................................................................................................................................................................................................................................. 22 2 13 0.15 2 0 0 0 2 0 0
...................................................................................................................................................................................................GGTAAAATTTACTTTTAGGGA................................................................................................................................................................. 21 3 20 0.15 3 0 0 3 0 0 0
................................................................................................................................AAAAAAAAAAAAGTTGGACAGGT.................................................................................................................................................................................................................................. 23 3 20 0.10 2 0 0 0 2 0 0
...................................................................................................................................................ACATACGGTTTTAAGAGTCC.................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 1 0 0 0
....................................................................................................................................................................................................................TGGTTTCTTATGTCGATTTAA................................................................................................................................................ 21 3 13 0.08 1 1 0 0 0 0 0
.......................................................................................................................................................................................TCTGATAGAATTTCTAAAATT............................................................................................................................................................................. 21 3 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................AAGATTTACATTGCGGT................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0
...............AGACCTGGTTGGTAAC.......................................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1
............................................................................................................................................GTTGGTCAGTTAGGGTT............................................................................................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:3557724-3558100 - dsi_16893 GATTTTGGCCGTTATCCTGGACCA------------------------------ACCATTCACTGCAGAGGCGGTTGTTCGTAAGTATTC---AAAGAATTCT------------------------------------------CATA----------------------------ATCAA----------------------TGA-GG--AAAAATATTGAAAA-ATCAAAATCAAAATGGTGTTGGGTTATCTG------------------------------------------------------------------------------------------------------------------------CTTTTTGTTTTTCAACCTGTCAATGCCAAAATTCTGAGGGCAATGACTTC----GG---ATTA-------------------------------AC---------------------------------------------------CTATCTTAA--------------AC---------------ATTTTAAATGAAACTACCTAAAAATACAGC----TTAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGCATGCACCAAAATGATTTAAATACTTGGAAAAACAATATTTTTCTAAATGTAAC---------------------------------------------------------------------GCTGGAATTGTAATATATATAAT------------A----------------TTTATTCCAGGAGATGCATGCCAGACGGCGCCGAATAAGAACGTGTGGCTGTGTAGCCCA-----
droSec2 scaffold_5:1800201-1800523 - GATTTTGGCCGTTATGCTGGACCA------------------------------ACCATTCACTGCAGAGGCGGTTGTTCGTGAGTATTC---AAAGATTTCT------------------------------------------CATA----------------------------ATCAA----------------------TGA-GG--AAAAATATTGAAAAAAT---GTTCAACATGGTGTTGGGTTATCTG------------------------------------------------------------------------------------------------------------------------CTTTTTGTTTTTCAACCTGTCAATGCCGAAATTCTGAGGGCAATGACTTC----GG---ATTA-------------------------------AC------TTAT-----------------------------------------CTATCAAAC--------------AC---------------CTCTTGATTGAAACTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAATATTTTTCTAAAAGTTA----------------------------------------------------------------------GCTAGAATTGTAATATATATAAT------------A----------------TTTATTCCAGGAGATGCATGCCAGACGGCACCGAATAAGAACGTGTGGCTGTGTAGCCCA-----
dm3 chr2L:3704584-3704929 - GATTTTGGCCGTTATCCTGGAACA------------------------------ACCATTCACTGCAGAGGCGGTTGTTCGTAAGTATTC---AAAGATTTCT------------------------------------------TAAA----------------------------ATCAA----------------------TCA-GA-AAAAAATATTGTAA-AAT---GTTCAACATGGTGTTGGGTTATCTG------------------------------------------------------------------------------------------------------------------------CTTTTTGTTTTTCAACCTGTCAATGCCGAAATTCTGAGGGCAATGACTTC----GG---ATTA-------------------------------AC---------------------------------------------------CTATCGAAT--------------AC---------------ATTTTAAATGAAACTACCTACATGCTTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTACTTGAAACCACAATATTTTTCGAAATATTA----------------------------------------------------------------------GCTAGAAATGTAATATATATAAT------------A----------------TGTATTCCAGGAGATGCATGCCAGACGGCGCCGAATAAGAGTGTGTGGCTATGTAGCCCA-----
droEre2 scaffold_4929:3749297-3749813 - GATTTTGGCCATTATCCTGGACCA------------------------------ACAATTCACTGCAGAGGCTCGTGTCCGTAAGTATTC---AAAGGTTTCT------------------------------------------CATA----------------------------ATCAA----------------------GAG-GT--GAAAATATTGTGAAAAT---GTATAACTTGGTGTTTGGTTATCTG------------------------------------------------------------------------------------------------------------------------GGTTTTGTTTTTCAACCTGTCAATGCCGAAATTCTGAGGCCAATGACTTTT--TGC---ATAACAAATTGAA--ATTTGTATA------ACTAAATTCTGAATATTTGTCAT----------ACGGTTTCCCTACTTTAGTGACATTTTATTGTACAGTTTATGAATCACAAACTAAATTCTGAAAATTTGT-------------CATACGCTTACCAACT----TTTGTGACATGTTATTCTACAAATTATGAATGCTTCAAACATTCAA--------------------------------------GGACTTTAAAATAA---------------------------------------------------------------------TGTTCAAACTACAATACGATTTGAGTACTTTGAACCACAATATGTT-CCAAAAGTTA----------------------------------------------------------------------GCTATAAATGCAATA--TCCAAT------------ATTTATGTGTGC---C--ATGTTTCAGGAGATGCGTGCCAGGTGGTGCCGAGTACGAATG---GACTGTGTGGTCCT-----
droYak3 2L:3701541-3701935 - GATTTTGGCCATTATTCTGGACCA------------------------------ACAATTCACTGCAGAGGCTCTCGTTCGTAAGTATTC---AGAGATTTCT------------------------------------------CATA----------------------------ATCAA----------------------TCA-GTAAAAAAATATTGTAAAAAT---GTATAACATGGTGTTGGGTTATCT-------------------------------------------------------------------------------------------------------------------------------GTTTCTCAACCTGTCAATGCCAAAATTCTGAGGGCAATGACTTT----GC---GTTATAAATTGAT--TTTCTTATATCACAAACTAAATTCTGCAAATTTGTTATGTTAAAAATTATGGTTTCCTTACTTTAGTGACATATTATCGAAC--------------AT---------------AT------------------------------------------------------------TATAAATATTTCCAAATTGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA--------------------------AT-----TTAAAT------------------------GATATAAATGTTATA--TACAAT------------ATTAATTTGTGC---C--ATGTTCCAGGAGATGCGTGCCAGATGGAGCCGAGTACGAATG---GAGTGTGTGGTCCT-----
droEug1 scf7180000409554:2373862-2373994 + GATCTTGCTGATCATCCCGGATCA------------------------------GAAATTCATGGTAGAGGCGAGCGTGCGTAAGTACTC---AAGAATCTAT------------------------------------------------------------------------------------------------------GA-GG--AA--------------------------------------------------------------------------------------------------------------------------------------------TAGACGAAAGCAAACTATTACTAAT-TTCGATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTTTTCAGGAGATCTATGCCA------------------------------------------
droBia1 scf7180000302261:2085954-2086131 - GGTTTTGACCATTATCCTGGATCA------------------------------GCAGTTCACCGCAGAGGCTCGCGTGCGTAAGTATTC---AAACTAGGTT------------------------------------------CATAGGGTA-----------------------------TAACAGGCTTTTGATATCTTT-AAGGA--TGATGCA-------------------------------------------------------------------------------------------------------------------------------------------TTAAAAAATACCTTATCTAAT-CTTGTTGTTCAACCTTTCAATGCCAAAACCGCCAGGGCAATGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415709:158461-158740 + TACCTTGGCCATCATCCTGGATCA------------------------------GCAATTCACCGCAGAGGCTCGCGTGCGTAAGTATTT---AATTAATAAA---T-AT-------------------------------------------------------------------ATTAATACA--------TAATCTCTTAGAG-GA--TAATACACTTTGAAAAT---GTC--------------------TT------------------------------------------------------------------------------------------------------------------------ATCAATGTTGCTCAATCTTTCAATGCCAAAATCCTTAGGGCAATGACTTT----AGTAGATTG-------------------------------GT---------------------------------------------------TACTCTTAA--------------AA---------------ACTGT-ACTGAAATTATTAGTAAGTCTATT----TTGATTTTTTATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTAAGAAAGTTTTCTAAAAA---TGTTGCA---------------------------------------------------------------------ATT-AAATTTATTTA------------------------------------------------------------------------------------------A-----
droEle1 scf7180000490728:435012-435364 - GATATTGGCCATGATCCTGGATCA------------------------------GCAATCGCCTGCAGAGGCACGAGTGCGTAAGTATTC---AAAAAATCTT-------------------------------------------AGA----------------------------AATAATAAA--------TA-----------------------------------------ATATATTAATG------CGGCTTTTAAGAACTTC-----------------------------------------------------------------AAACAATAATCTGATTATAA---------------------AACTCTGTTTTTAAAGGTGTTTAAACTATAATTCAATTCAATTTGAATTC--------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------TAAGTTGAAATACCAATTT----------------------------GTCTGTTAAGAAAATATTTTTAATATAATTATAAATTACT-TAAATATTTTTTAATTACTTAAATCATT-------------------------------------------------------------------------------------------------------------------------------------------TTTTG--GACAAT------------ACTAATTTGTGACTTC--GTATTTCAGGTGACCTATGCCAGGTAGTGCCGAGCACAAATG---GAGTGTGTATGCCC-----
droRho1 scf7180000779523:430525-430922 - GATTTTGGCAATGATTCTGGACCA------------------------------GCAAACGCCCGCAGAGGCTCGAGTGCGTAAGTATTA---AAAGTTCCTTTTATAACGTTTTGGATTTTCAATCTTTTATTATGAAATGCCTTATGGGGGATT-------------------------TTTAATAGGCTTCCCAAGTCCTC-ACGAT--TGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTATGA---TAATCACTTATCATAC---AGAACTAATTTAACGATTTGAACG------GCTTAATTCTACATTTT-----------------------------------------TAATCCCAC--------------AA---------------TTCAAATTTTAAAGTTC-----------------------------------------------------------------------------ACATAACAAAT---------------------------------GT-----------------------------------TAAAAATTTATTAACAAATTTATTCTTTTGTAGGCATGTATA--TA----TGATATATTTGAAGTAGTACTAATTTTTCA-------------------------------------------------------------------------------------------------AAA------------T----------------TCTTTTTCAGGAGACCTTTGCCAGGTGGTGCCGAGCACGAATG---GAGTGTGTATGCCC-----
droFic1 scf7180000453924:1688012-1688076 - GATTTTGGCCATGATCCTGGATCA------------------------------GCAGATGCCTGCGGAGGCACGAGTGCGTAAGTACAC---AAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302270:895999-896325 + GATTTTGGCCATGATCCAGGAGAA------------------------------GCAGGTGCCCGTTGAGGCCACAGTTCGTGAGTATTA---AATGAATTTT------------------------------------------GAAA-----------------------------------------------------------GG--GAAATTAATGGGAAAAT---TTC--------------------TA------------------------------------------------------------------------------------------------------------------------AAAAAAACTACTTAACTTAGGAATTGT----------------------A--------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------CAAGTGGAAATGCTAGTGTAAATTTTTCTTCTTCAAGACCCCAAAATATCTTAAAAGAAAACTTATTT-------------------------------------------CCATT----------------------TGAACAATTCCAAATTTCAAA-------------TTA----GAA--------------------------ATTAATGTGATATT---------------------A-ACTGAAA--GTT---------AATTCTAATTTTAAA----------------TTGCTTTCAGGTGACCTCTGCCAGTCGGTGCCGAGCACAAGCAATGGCATTTGTATGCCC-----
droAna3 scaffold_12916:5768228-5768661 - GATTTTGGCCATGATCCTAGAGCA------------------------------GCAGATGCCTGTTGAGGCGCGAGTTCGTAAGTATTTCAAAATAAAGC--TAAT-ATATTGAGAA------------------------------------TAATACCCTATATTAGACCCTATATAATTACA--------AAA-----------------------------------ATTCATATTGTTGAT-------CCGCTATTATAAATTTCAAACTGATTTCTCTGAATTATTAAATGCATTTTTTTG---AAAAG---CA-TTTTTTAAGTAAACAAATATTAATCTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAATAAATCAATCAATAAATTATTAACC--------AGTTA-TGT-------------CCAGTT----------------------------GC-------GACT---------------------------A------------------------------------------------------------------------GATTTTTAAAAA---TATTTCATAATAATATTAATTAATCCATTTTAA------ACGAGATTGTCTCGCAGAGCTGTCGCTTTTCCTTAAATTTGTATTAAATATAAA------------T----------------ACCCTTCCAGGAGATCTATGCCAAGTGGTACCCAGCACGAGCG---GACTGTGTGTCCCC-----
droBip1 scf7180000396568:1070909-1071266 + CATCTTGGCCATGATCCTGGAGCA------------------------------GCAGATTCCTGTTGAGGCGCGAGTTCGTAAGTTAAA---AATTATTC--CAAT-ATATTGAGAA------------------------------------TT--------------------------------------------------------------------------------------------------TT----TTTTTTATTTCCGAATAA--ACTCTAAG-TTTTTTATGCACTTTTCTACAAAAAAGAATCGTTTTTTCAAGTAAACAAATAGTAATCTGATTAATAGTTGTATGCAAACTA--------------------------------------------------------------------------------------------------------------------------------GTAG-------------------------------------------------------------------------------------------------------------------------------------------------TTC-------------CCAGTT----------------------------GC-------AACT---------------------------A------------------------------------------------------------------------GATTTTTTACAA---TATTTTATAACATTTTTTA--ATTCCCTATTAA------ACGATATTTT---------------------TGTAAATTTGTATTACATTTTAATTCTGTTTTT--T----------------ACTTTTCCAGGAGATCTTTGCCAAGTGGTGCCCAGCACGAGCG---GACTGTGTGTGCCC-----
dp5 4_group3:5025703-5025768 + TGTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------T----------------TTCTGATTAGGTGATCTCTGCACGGTGCAGCCCAGCACGAATG---GACTCTGTGTGCCG-----
droPer2 scaffold_1:6517034-6517109 + GATCCTGACAATGATCCAGGACCA------------------------------AGCAATC------GAGGCACGCTCCCGTAAGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---GAAAGCATATTCCCACAAT
droWil2 scf2_1100000004521:9405279-9405397 + AGTATC-------ATTTTAAATGAACCTTTGATAATATAAAATCTTCTGGAGTTATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTGCTTTCAGGTGATCTCTGTCAGGTGAAACCCAGCACTAGTG---GTCTCTGTGTGCCC----A
droVir3 scaffold_12963:15011424-15011473 + C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGATCTGTGCCAGGTGAAGCCCAGCACGAGCA---GCCTCTGTGTGCCG-----
droMoj3 scaffold_6500:17982731-17982780 + C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGATTTGTGCCAGGTGAAGCCCACGACGAGCG---GCCTGTGCGTGCCC-----
droGri2 scaffold_15126:4372654-4372737 - TATTTTTCTAGTG------GATTA------------------------------ATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT-------------------------T------------G--------------C--TTGTTGCAGGTGATCTGTGCCAGGTGAAGCCCAGCACAAGCA---GCCTGTGTGTGCCA-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GATTTTGGCCGTTATCCTGGACCA------------------------------ACCATTCACTGCAGAGGCGGTTGTTCGTAAGTATTC---AAAGAATTCT------------------------------------------CATA----------------------------ATCAA----------------------TGA-GG--AAAAATATTGAAAA-ATCAAAATCAAAATGGTGTTGGGTTATCTG------------------------------------------------------------------------------------------------------------------------CTTTTTGTTTTTCAACCTGTCAATGCCAAAATTCTGAGGGCAATGACTTC----GG---ATTA-------------------------------AC---------------------------------------------------CTATCTTAA--------------AC---------------ATTTTAAATGAAACTACCTAAAAATACAGC----TTAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGCATGCACCAAAATGATTTAAATACTTGGAAAAACAATATTTTTCTAAATGTAAC---------------------------------------------------------------------GCTGGAATTGTAATATATATAAT------------A----------------TTTATTCCAGGAGATGCATGCCAGACGGCGCCGAATAAGAACGTGTGGCTGTGTAGCCCA-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................ATCAAAATGGTGTTGGGTTATCTG------------------------------------------------------------------------------------------------------------------------CTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..TTTTGGCCGTTATCCTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...TTTGGCCGTTATCCTGGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAC---------------------------------------------------------------------GCTGGAATTGTAATATAT...................................................................................................2311.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGGGCAATGACTTC----G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATAAT------------A----------------TTTATTCCAGGAG....................................................2411.00110000000000000000
droSec2
GATTTTGGCCGTTATGCTGGACCA------------------------------ACCATTCACTGCAGAGGCGGTTGTTCGTGAGTATTC---AAAGATTTCT------------------------------------------CATA----------------------------ATCAA----------------------TGA-GG--AAAAATATTGAAAAAAT---GTTCAACATGGTGTTGGGTTATCTG------------------------------------------------------------------------------------------------------------------------CTTTTTGTTTTTCAACCTGTCAATGCCGAAATTCTGAGGGCAATGACTTC----GG---ATTA-------------------------------AC------TTAT-----------------------------------------CTATCAAAC--------------AC---------------CTCTTGATTGAAACTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACAATATTTTTCTAAAAGTTA----------------------------------------------------------------------GCTAGAATTGTAATATATATAAT------------A----------------TTTATTCCAGGAGATGCATGCCAGACGGCACCGAATAAGAACGTGTGGCTGTGTAGCCCA-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGTGTGGCTGTGTAGCCCA-----2311.0010010
dm3
GATTTTGGCCGTTATCCTGGAACA------------------------------ACCATTCACTGCAGAGGCGGTTGTTCGTAAGTATTC---AAAGATTTCT------------------------------------------TAAA----------------------------ATCAA----------------------TCA-GA-AAAAAATATTGTAA-AAT---GTTCAACATGGTGTTGGGTTATCTG------------------------------------------------------------------------------------------------------------------------CTTTTTGTTTTTCAACCTGTCAATGCCGAAATTCTGAGGGCAATGACTTC----GG---ATTA-------------------------------AC---------------------------------------------------CTATCGAAT--------------AC---------------ATTTTAAATGAAACTACCTACATGCTTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTACTTGAAACCACAATATTTTTCGAAATATTA----------------------------------------------------------------------GCTAGAAATGTAATATATATAAT------------A----------------TGTATTCCAGGAGATGCATGCCAGACGGCGCCGAATAAGAGTGTGTGGCTATGTAGCCCA-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGTGTGGCTATGTA..........1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCCGAATAAGAGTGTGTGGCTATG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGTGTGTGGCTA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCCAGACGGCGCCGAATAAGA.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...TTTGGCCGTTATCCTGGAACA------------------------------ACCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACGGCGCCGAATAAGAGTGTG....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGAGTGTGTGGCTATGTAGCCC......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCAATGACTTC----GG---AT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGAGATGCATGCCAGACGG.....................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ACTGCAGAGGCGGTTGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAGAGTGTGTGGCTATG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------A----------------TGTATTCCAGGAGATGCA...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGTGTGTGGCT...............1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGACGGCGCCGAATAAG..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................CTGCAGAGGCGGTTGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGTGTGTGGCTATG............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATGCCAGACGGCGCCG................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGCATGCCAGACGGCGCCG................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGAGTGTGTGGCTATGTG..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGAATAAGAGTGTGT...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAAGAGTGTGTGGCT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................A------------------------------ACCATTCACTGCAGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..TTTTGGCCGTTATCCTGGAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................ACTGCAGAGGCGGTTGTTCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GATTTTGGCCATTATCCTGGACCA------------------------------ACAATTCACTGCAGAGGCTCGTGTCCGTAAGTATTC---AAAGGTTTCT------------------------------------------CATA----------------------------ATCAA----------------------GAG-GT--GAAAATATTGTGAAAAT---GTATAACTTGGTGTTTGGTTATCTG------------------------------------------------------------------------------------------------------------------------GGTTTTGTTTTTCAACCTGTCAATGCCGAAATTCTGAGGCCAATGACTTTT--TGC---ATAACAAATTGAA--ATTTGTATA------ACTAAATTCTGAATATTTGTCAT----------ACGGTTTCCCTACTTTAGTGACATTTTATTGTACAGTTTATGAATCACAAACTAAATTCTGAAAATTTGT-------------CATACGCTTACCAACT----TTTGTGACATGTTATTCTACAAATTATGAATGCTTCAAACATTCAA--------------------------------------GGACTTTAAAATAA---------------------------------------------------------------------TGTTCAAACTACAATACGATTTGAGTACTTTGAACCACAATATGTT-CCAAAAGTTA----------------------------------------------------------------------GCTATAAATGCAATA--TCCAAT------------ATTTATGTGTGC---C--ATGTTTCAGGAGATGCGTGCCAGGTGGTGCCGAGTACGAATG---GACTGTGTGGTCCT-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCAGGAGATGCGTGCCA..........................................2111.0010000100
............................................................CACTGCAGAGGCTCGTGTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAATG---GACTGTGTGGTC.......2111.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCGAGTACGAATG---GACTG..............2111.0010000010
droYak3
GATTTTGGCCATTATTCTGGACCA------------------------------ACAATTCACTGCAGAGGCTCTCGTTCGTAAGTATTC---AGAGATTTCT------------------------------------------CATA----------------------------ATCAA----------------------TCA-GTAAAAAAATATTGTAAAAAT---GTATAACATGGTGTTGGGTTATCT-------------------------------------------------------------------------------------------------------------------------------GTTTCTCAACCTGTCAATGCCAAAATTCTGAGGGCAATGACTTT----GC---GTTATAAATTGAT--TTTCTTATATCACAAACTAAATTCTGCAAATTTGTTATGTTAAAAATTATGGTTTCCTTACTTTAGTGACATATTATCGAAC--------------AT---------------AT------------------------------------------------------------TATAAATATTTCCAAATTGAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTA--------------------------AT-----TTAAAT------------------------GATATAAATGTTATA--TACAAT------------ATTAATTTGTGC---C--ATGTTCCAGGAGATGCGTGCCAGATGGAGCCGAGTACGAATG---GAGTGTGTGGTCCT-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................CA------------------------------ACAATTCACTGCAGAGGCTCTCGTTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.................TGGACCA------------------------------ACAATTCACTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................................................ATTCACTGCAGAGGCTCTCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
.................TGGACCA------------------------------ACAATTCACTGCAGAGGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droEug1
GATCTTGCTGATCATCCCGGATCA------------------------------GAAATTCATGGTAGAGGCGAGCGTGCGTAAGTACTC---AAGAATCTAT------------------------------------------------------------------------------------------------------GA-GG--AA--------------------------------------------------------------------------------------------------------------------------------------------TAGACGAAAGCAAACTATTACTAAT-TTCGATG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTTTTCAGGAGATCTATGCCA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGTTTTGACCATTATCCTGGATCA------------------------------GCAGTTCACCGCAGAGGCTCGCGTGCGTAAGTATTC---AAACTAGGTT------------------------------------------CATAGGGTA-----------------------------TAACAGGCTTTTGATATCTTT-AAGGA--TGATGCA-------------------------------------------------------------------------------------------------------------------------------------------TTAAAAAATACCTTATCTAAT-CTTGTTGTTCAACCTTTCAATGCCAAAACCGCCAGGGCAATGACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TACCTTGGCCATCATCCTGGATCA------------------------------GCAATTCACCGCAGAGGCTCGCGTGCGTAAGTATTT---AATTAATAAA---T-AT-------------------------------------------------------------------ATTAATACA--------TAATCTCTTAGAG-GA--TAATACACTTTGAAAAT---GTC--------------------TT------------------------------------------------------------------------------------------------------------------------ATCAATGTTGCTCAATCTTTCAATGCCAAAATCCTTAGGGCAATGACTTT----AGTAGATTG-------------------------------GT---------------------------------------------------TACTCTTAA--------------AA---------------ACTGT-ACTGAAATTATTAGTAAGTCTATT----TTGATTTTTTATATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTAAGAAAGTTTTCTAAAAA---TGTTGCA---------------------------------------------------------------------ATT-AAATTTATTTA------------------------------------------------------------------------------------------A-----SizeHit CountTotal NormTotal
No Reads
droEle1
GATATTGGCCATGATCCTGGATCA------------------------------GCAATCGCCTGCAGAGGCACGAGTGCGTAAGTATTC---AAAAAATCTT-------------------------------------------AGA----------------------------AATAATAAA--------TA-----------------------------------------ATATATTAATG------CGGCTTTTAAGAACTTC-----------------------------------------------------------------AAACAATAATCTGATTATAA---------------------AACTCTGTTTTTAAAGGTGTTTAAACTATAATTCAATTCAATTTGAATTC--------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------TAAGTTGAAATACCAATTT----------------------------GTCTGTTAAGAAAATATTTTTAATATAATTATAAATTACT-TAAATATTTTTTAATTACTTAAATCATT-------------------------------------------------------------------------------------------------------------------------------------------TTTTG--GACAAT------------ACTAATTTGTGACTTC--GTATTTCAGGTGACCTATGCCAGGTAGTGCCGAGCACAAATG---GAGTGTGTATGCCC-----SizeHit CountTotal NormTotal
No Reads
droRho1
GATTTTGGCAATGATTCTGGACCA------------------------------GCAAACGCCCGCAGAGGCTCGAGTGCGTAAGTATTA---AAAGTTCCTTTTATAACGTTTTGGATTTTCAATCTTTTATTATGAAATGCCTTATGGGGGATT-------------------------TTTAATAGGCTTCCCAAGTCCTC-ACGAT--TGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTATGA---TAATCACTTATCATAC---AGAACTAATTTAACGATTTGAACG------GCTTAATTCTACATTTT-----------------------------------------TAATCCCAC--------------AA---------------TTCAAATTTTAAAGTTC-----------------------------------------------------------------------------ACATAACAAAT---------------------------------GT-----------------------------------TAAAAATTTATTAACAAATTTATTCTTTTGTAGGCATGTATA--TA----TGATATATTTGAAGTAGTACTAATTTTTCA-------------------------------------------------------------------------------------------------AAA------------T----------------TCTTTTTCAGGAGACCTTTGCCAGGTGGTGCCGAGCACGAATG---GAGTGTGTATGCCC-----SizeHit CountTotal NormTotal
No Reads
droFic1
GATTTTGGCCATGATCCTGGATCA------------------------------GCAGATGCCTGCGGAGGCACGAGTGCGTAAGTACAC---AAAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GATTTTGGCCATGATCCAGGAGAA------------------------------GCAGGTGCCCGTTGAGGCCACAGTTCGTGAGTATTA---AATGAATTTT------------------------------------------GAAA-----------------------------------------------------------GG--GAAATTAATGGGAAAAT---TTC--------------------TA------------------------------------------------------------------------------------------------------------------------AAAAAAACTACTTAACTTAGGAATTGT----------------------A--------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------------CAAGTGGAAATGCTAGTGTAAATTTTTCTTCTTCAAGACCCCAAAATATCTTAAAAGAAAACTTATTT-------------------------------------------CCATT----------------------TGAACAATTCCAAATTTCAAA-------------TTA----GAA--------------------------ATTAATGTGATATT---------------------A-ACTGAAA--GTT---------AATTCTAATTTTAAA----------------TTGCTTTCAGGTGACCTCTGCCAGTCGGTGCCGAGCACAAGCAATGGCATTTGTATGCCC-----SizeHit CountTotal NormTotal
No Reads
droAna3
GATTTTGGCCATGATCCTAGAGCA------------------------------GCAGATGCCTGTTGAGGCGCGAGTTCGTAAGTATTTCAAAATAAAGC--TAAT-ATATTGAGAA------------------------------------TAATACCCTATATTAGACCCTATATAATTACA--------AAA-----------------------------------ATTCATATTGTTGAT-------CCGCTATTATAAATTTCAAACTGATTTCTCTGAATTATTAAATGCATTTTTTTG---AAAAG---CA-TTTTTTAAGTAAACAAATATTAATCTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAATAAATCAATCAATAAATTATTAACC--------AGTTA-TGT-------------CCAGTT----------------------------GC-------GACT---------------------------A------------------------------------------------------------------------GATTTTTAAAAA---TATTTCATAATAATATTAATTAATCCATTTTAA------ACGAGATTGTCTCGCAGAGCTGTCGCTTTTCCTTAAATTTGTATTAAATATAAA------------T----------------ACCCTTCCAGGAGATCTATGCCAAGTGGTACCCAGCACGAGCG---GACTGTGTGTCCCC-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTACCCAGCACGAGCG---...................2111.001100000
................CTAGAGCA------------------------------GCAGATGCCTGTTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACGAGCG---GACTGTGTGTCCCC-----2411.001000001
.......GCCATGATCCTAGAGCA------------------------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...........................................................................................................................................................................................................................................CATATTGTTGAT-------CCGCTATTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
CATCTTGGCCATGATCCTGGAGCA------------------------------GCAGATTCCTGTTGAGGCGCGAGTTCGTAAGTTAAA---AATTATTC--CAAT-ATATTGAGAA------------------------------------TT--------------------------------------------------------------------------------------------------TT----TTTTTTATTTCCGAATAA--ACTCTAAG-TTTTTTATGCACTTTTCTACAAAAAAGAATCGTTTTTTCAAGTAAACAAATAGTAATCTGATTAATAGTTGTATGCAAACTA--------------------------------------------------------------------------------------------------------------------------------GTAG-------------------------------------------------------------------------------------------------------------------------------------------------TTC-------------CCAGTT----------------------------GC-------AACT---------------------------A------------------------------------------------------------------------GATTTTTTACAA---TATTTTATAACATTTTTTA--ATTCCCTATTAA------ACGATATTTT---------------------TGTAAATTTGTATTACATTTTAATTCTGTTTTT--T----------------ACTTTTCCAGGAGATCTTTGCCAAGTGGTGCCCAGCACGAGCG---GACTGTGTGTGCCC-----SizeHit CountTotal NormTotal
No Reads
dp5
TGTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------T----------------TTCTGATTAGGTGATCTCTGCACGGTGCAGCCCAGCACGAATG---GACTCTGTGTGCCG-----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGCACGAATG---GACTCTGTGTG........2511.0010100000000
droPer2
GATCCTGACAATGATCCAGGACCA------------------------------AGCAATC------GAGGCACGCTCCCGTAAGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---GAAAGCATATTCCCACAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGTATC-------ATTTTAAATGAACCTTTGATAATATAAAATCTTCTGGAGTTATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-GTGCTTTCAGGTGATCTCTGTCAGGTGAAACCCAGCACTAGTG---GTCTCTGTGTGCCC----ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTG---GTCTCTGTGTGCCC----.1812.00220000
droVir3
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGATCTGTGCCAGGTGAAGCCCAGCACGAGCA---GCCTCTGTGTGCCG-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCAGGTGAAGCCCAGC.............................2011.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTGAAGCCCAGCACGC.........................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTGATTTGTGCCAGGTGAAGCCCACGACGAGCG---GCCTGTGCGTGCCC-----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGCG---GCCTGTGCGTGCCC-----2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGCG---GCCTGTGCGTGCC......2111.001100000
droGri2
TATTTTTCTAGTG------GATTA------------------------------ATCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAT-------------------------T------------G--------------C--TTGTTGCAGGTGATCTGTGCCAGGTGAAGCCCAGCACAAGCA---GCCTGTGTGTGCCA-----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCA---GCCTGTGTGTGCCA-----2112.00202
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCCCAGCACAAGCA---GCCTGTGTG..........2811.00110
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCA---GCCTGTGTGTGCC......2011.00101
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCCAGGTGAAGCCCAGCA............................2211.00110
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTGCCAGGTGAAGCCCAGCACA..........................2611.00110
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCA---GCCTGTGTGTGCC......1820.50110

Generated: 05/19/2015 at 11:01 AM