ID:

dsi_16872

Coordinate:

3r:17431988-17432137 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_17431871_17431987_+]; CDS [3r_17431871_17431987_+]; intron [3r_17431988_17433577_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCTGCAAGATCATGGTCCGAGGCAAGGGTTCCATGCGCGACAAGAAGAAGGTGAGTGCATCGCTCGATCGAGTGGATTACGGATTCCAAATGGTTTGGCAGGAAACGGGGCATTACTGCAGGCAGATATACATTTTAGACATTCAGGCATTAGCAGAGCAATTTCATTTTTAATTATCATGAATAGTGCCCGCGTATATGCTTGGATATGAAAATTCAGTCGACAGTTGCTATCCGTGCCAAATGGGAAT ************************************************...........(((.(((((..((((........))))..))))).))).....(((((((((((((((..((.((................))..))....))))......(((((...........))))))))))))).))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
..TGCAAGATCATGGTCCGAGGCAAGGG..............................................................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0
..........................................................ATCGTTCGTTCGAGGGGAT.............................................................................................................................................................................	19	3	10	0.20	2	0	2	0	0	0	0
.............................TCCATGTGCGAGAAGAAGA..........................................................................................................................................................................................................	19	2	7	0.14	1	0	0	1	0	0	0
..................................................................................ATTCCAAATGGTTTAGCAGAC...................................................................................................................................................	21	3	9	0.11	1	0	0	0	1	0	0
............................TTCCATGCGCGTCAATAA............................................................................................................................................................................................................	18	2	9	0.11	1	0	0	0	0	1	0
.......................................................TGCTGCGCTCGATCGAG..................................................................................................................................................................................	17	2	18	0.06	1	0	0	0	0	0	1
......................CAAGGGTTCCTGTCGCGA..................................................................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1

Anti-sense strand reads

CGACGTTCTAGTACCAGGCTCCGTTCCCAAGGTACGCGCTGTTCTTCTTCCACTCACGTAGCGAGCTAGCTCACCTAATGCCTAAGGTTTACCAAACCGTCCTTTGCCCCGTAATGACGTCCGTCTATATGTAAAATCTGTAAGTCCGTAATCGTCTCGTTAAAGTAAAAATTAATAGTACTTATCACGGGCGCATATACGAACCTATACTTTTAAGTCAGCTGTCAACGATAGGCACGGTTTACCCTTA ************************************************...........(((.(((((..((((........))))..))))).))).....(((((((((((((((..((.((................))..))....))))......(((((...........))))))))))))).))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	M053 female body	O001 Testis
.................................................................................................................................................................................................................................CATCGATAGGCACGG..........	15	1	5	0.20	1	1	0	0	0	0	0
............................AAGGTACACGCTGTTC..............................................................................................................................................................................................................	16	1	10	0.20	2	0	0	2	0	0	0
............................AAGGTACACGCTGTTCT.............................................................................................................................................................................................................	17	1	7	0.14	1	0	1	0	0	0	0
............................................................................................................................................................TGGTTGAAGTAAAAATTAA...........................................................................	19	2	12	0.08	1	1	0	0	0	0	0
.....GTCTAGTACCCGGCTCC....................................................................................................................................................................................................................................	17	2	13	0.08	1	0	0	0	1	0	0
..............CAGGCTCCGTCGCCAAG...........................................................................................................................................................................................................................	17	2	13	0.08	1	0	1	0	0	0	0
........................................................................................................................................................CGTCTCGTTAGAGTAAAC................................................................................	18	2	16	0.06	1	0	0	0	0	1	0
................................................................................CCTAATCTTTACCAATCCGT......................................................................................................................................................	20	3	16	0.06	1	0	0	0	0	0	1

Generated: 04/23/2015 at 07:59 PM