ID:

dsi_16868

 Coordinate:

3r:8036887-8037173 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3r_8037174_8040762_+]; CDS [3r_8037174_8038618_+]; CDS [3r_8036397_8036886_+]; exon [3r_8036295_8036886_+]; intron [3r_8036887_8037173_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAGGCCGACCAGGATGTCATCAAGGCGCTGCAGCGGTGCCGTGATGAAGGCAAGTACTTTGCCCATACTATTATCATTCGCATATTTCTTGATAAAATAAGAAACATGGCGCATTAAGCTTTTTAAGCATTTTTGTTACCGACCTCAAAATTAACATGCAAATATATATATATAAAAACCATACATAGTAGAATTGGAATAGATGCTAGTCTTTACAAACAAACAAAATTATATGATTTACTCAAAAATTCATTTTACAAATTTGAATTTGTTTTTAAGATGAATTAAGTGAATCACTTCATACAACCATGTAATGATTTTATATGCTCCCCACAGGCATCAAGCGCTTGGACTTGAGCAAATCCTCCATCACGGTGATCCCCAGC
**************************************************((.((((((...((.((.(((((((......(((.(((((((......))))))).)))((.......)).......(((((((((..........))))).....)))).........................))))))).)).))...)).)))).)).......................(((((((((....(((((((((((.((((........)))).))))))))))).)))))))))...........(((((((.....)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
......CGACCAGGATGTCATCAAGGC........................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 4.00 4 2 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GAAGGCATCAAGCGCTTGGAC................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................GCTGCAGCGGTGCCGTGATG.................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................GCGCTGCAGCGGTGCCGTGAT..................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................AAGCGGTGCCGTGAT..................................................................................................................................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................AATATATTTATATAAAAACCC............................................................................................................................................................................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................TGCTTGGACTTAAGCAAGTC...................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................ACCATACCTAGTAGAG................................................................................................................................................................................................. 16 2 15 0.07 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................CCTAGTAGAATTGGAATTT........................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 1 0
..........................CGTTGCAGCGGTGCCGC........................................................................................................................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0
................................................................................GGATATTTGTTGATAAAATGA.............................................................................................................................................................................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGTCCGGCTGGTCCTACAGTAGTTCCGCGACGTCGCCACGGCACTACTTCCGTTCATGAAACGGGTATGATAATAGTAAGCGTATAAAGAACTATTTTATTCTTTGTACCGCGTAATTCGAAAAATTCGTAAAAACAATGGCTGGAGTTTTAATTGTACGTTTATATATATATATTTTTGGTATGTATCATCTTAACCTTATCTACGATCAGAAATGTTTGTTTGTTTTAATATACTAAATGAGTTTTTAAGTAAAATGTTTAAACTTAAACAAAAATTCTACTTAATTCACTTAGTGAAGTATGTTGGTACATTACTAAAATATACGAGGGGTGTCCGTAGTTCGCGAACCTGAACTCGTTTAGGAGGTAGTGCCACTAGGGGTCG
**************************************************((.((((((...((.((.(((((((......(((.(((((((......))))))).)))((.......)).......(((((((((..........))))).....)))).........................))))))).)).))...)).)))).)).......................(((((((((....(((((((((((.((((........)))).))))))))))).)))))))))...........(((((((.....)))))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
................................................................................................................................................................................................TTAACCTTATCTACGATC................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................CACTTAGTGAAGTATGTTG............................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................TTAACCTTATCTACGATCAG............................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................ATGTATCTTCATAACCTTAT......................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TGTTTGTTTGTTTTAATA.......................................................................................................................................................... 18 0 2 0.50 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................TTTAGGAGGCAGTGCTACTA....... 20 2 4 0.50 2 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................TTTTAGGAGGCAGTGCTACTA....... 21 3 5 0.40 2 0 2 0 0 0 0 0 0
...................................................................................................................................AAAACAATGGCTGTAGTCT............................................................................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 1 0 0
..................................................................................................................................AAAAAAATTGGCTGAAGTTTTAA.......................................................................................................................................................................................................................................... 23 3 4 0.25 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TGTATCTTCATAACCTTAT......................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................ATGTATCTTCATAACCTTATA........................................................................................................................................................................................ 21 3 9 0.22 2 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................................................TGTTTGTTTGTTTTA............................................................................................................................................................. 15 0 20 0.20 4 0 0 0 0 4 0 0 0
.....................................................................................................................................................................ATAAATATATTTTTGCTATGTGT....................................................................................................................................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 1 0
..................................................................................................................................AAAAACAATGGCTAGTGT............................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................ACATTACGAAAATATAC............................................................ 17 1 7 0.14 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................ATGTGTCTTCATAACCTTAT......................................................................................................................................................................................... 20 3 15 0.13 2 0 0 0 1 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................CGAACCTGCACTTGTT......................... 16 2 20 0.10 2 0 0 0 0 0 0 1 1
.......................................................................................................................................................................................................................................................................................................................................................................TTTTAGGAGGCAGTGCTACT........ 20 3 11 0.09 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................GAAATGGTTGTTTATTTTATT........................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................TGTGTCTTCATAACCTTAT......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................GAAATGCTTGTTCGTTT............................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1
...................................................................................................................................AAAAAAATGGCTGGAGTAGT............................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 1
..........................................................................AGTAAGCGGATATAGAAGT...................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................AAACTAAACTTCTACTTAA.................................................................................................... 19 2 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:8036837-8037223 + dsi_16868 C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGCTGCAGCGGTG-CCGTGATGAAGGCAAGTA-C-TTT----GCCCATACTATTATCATTCGCATATT-----------------------TCTTGATAAAATAAGAAACATGGCGCATTAAGCTTTTTAAGCATTTTTGT-------TACCGACCTCAAAATTAACATGCAAATATATATATATAAA------AACCATACATAGTAGAATTGGAATAGATGCTAGTCTTTACAA--------ACAAACAAA---ATTA----------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------TGATTTACTCAAA--AAT-----------------------------------------------------TCATTTTACAAATTTGAATTTGTTTTTA-AGATGAATTAAG----TGAATCA--------CTTCA----------------------------------------------------------------------------------------------------------------TACAACC-ATGTAATGATTTTAT----ATGC-TCCCCACAGGCATCAAGCGCTTGGACTTGAGCAAATCCTCCATCACGGTGATCCCCAGC
droSec2 scaffold_12:923692-924092 + C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGCTGCAGCGGTG-CCGTGATGAAGGCAAGTA-C-TTT----GCCTATACTATTATCATACGCATATTTCCGTTTCAA--TTTAATATTTTTCTGGATGAAATAAGAATCATGGCGCATGAAGCTT-T-----------GTCCCTTGCCGCCGACCTCAAAATTAACTTGCAAATATAT--ATATTAA------AACTATACATAGTAGAATTGGAATAGATGCTAGTCTTTACAA--------ACAAACAAA---ATTA----------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------TGATTTACTCAAA--AAT-----------------------------------------------------TCATTTTACAAATTTGAATTGGTTTATA-AGATGAATTAAG----TGAATCA--------CTTCA----------------------------------------------------------------------------------------------------------------TACAACC-ATGTAATGATTTTAT----ATGC-TCCCCACAGGCATCAAGCGCTTGGACTTGAGCAAATCTTCGATCACGGTGATCCCCAGC
dm3 chr3R:13224453-13224790 - C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGCTGCAGCGCTG-TCGTGATGAAGGCAAGTA-C-A-----------------------------------------A--TTTAATATTTTTCTTGATGAAATAAGAAACATGGCGCAGAAAGCTT-T-----------GTCCCTTACCACCGAGTTCAAAATTAACTTGGAAATATAT--ATATTAA------GGCCATAATTAGCAGAATTGAAATAGAAGCTAGTCAATACAT--------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--ATT-----------------------------------------------------TCATT-TACTAATTAGAATTTGTTAATA-AGATGAATTAAG----TTAATAA--------CTTCA----------------------------------------------------------------------------------------------------------------TACAACC-ATATAATGATTTTAT----ACGC-TCCCCACAGGCATCAAGCGCTTGGACTTGAGCAAATCTTCGATCACGGTGATCCCCAGC
droEre2 scaffold_4770:8405221-8405577 + C-------------CAGGCCGACCAAGAT--GTCATCAAGGCGTTGCAGCGGTG-CCGCGATGAAGGCAAGTA-T-TTC----GACCATGTCGATATCA--CGGATATTTCCGTTTTCA--TTTAATGCTTTCCTGAATGAAGTAAGAAACATGACACATCAAACTTTT-----------ATCTCATGTCACCAGCATTAATATAAAGTTGCAAATATATTT-----AA------G-------------GAATTGGAATGGCTGCTAGGCTATACAA--------ACAAAGAAAGAATTAA----------------------------------------------------------------------------------------------CA---------------------------------------------------------------------------------------------------AGA----CTAAAA--TAC-----------------------------------------------------CCATTTTATAAAT--------------------------------TGATTCA--------CTTTA----------------------------------------------------------------------------------------------------------------TACAACCTCTGTAATGATTTTAT----ATGC-TCCCCGCAGGCATCAAGCGCTTGGACTTGAGCAAATCCTCGATCACGGTGATCCCCAGC
droYak3 3R:17316277-17316652 - C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGTTGCAGCGTTG-CCGCGATGAAGGCAAGTA-T-TTG----GACCTTATGGTTATCATACGCGTATTTCCTTTTTTA--TTTAATCTTTGTCTGAATGAAATAAGAAACATGACA----------------------------------CCAGGATTAATATTAACTTGCAAATGAAT------TAA------GG--ATGCTCATTATAATTGGAATGGATGCTTGTCTATACGC--------GTAAAGAAAGAATTTA----------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------AAACTGTCTCGAAATAAT-----------------------------------------------------TCATTTT---AATTGGAATTTGTTTTAA-AGATGAAAAACT----TGATTCA--------CTTTA----------------------------------------------------------------------------------------------------------------TACAACATCTGTAATGCTTTTGT----ATGC-TCCCCGCAGGCATCAAGCGCTTGGACTTGAGCAAATCTTCGATCACGGTGATCCCCAGC
droEug1 scf7180000409568:138554-138632 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGTTTTTAT----ATGGTTTCCCGCAGGCATCAAACGCTTGGACCTGAGCAAATCCTCAATCACAGTGCTCCCTAGC
droBia1 scf7180000302075:4442356-4442522 - C-------------CAGGCGGACCAGGAT--GTCATCAAGGCGCTGCAGCGATG-TCGCGATGAAGGCAAGTGTTTTTCGATT--------------------CATTTT-----------------------AACAAGTGAATTAATAACCATGACACATCAAAGTTAA-----------AACGCTTATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACCGGCACTTGAAA---AGGAAAACCCATATTATT-TTCTTAAAAAC
droTak1 scf7180000413407:9434-9526 - C-------------CAGGCGGACCAGGAT--GTCATCAAGGCGCTGCAGCGATGGCCGGGATGAAGGCAAGTT-ATTTCGAAT--------------------A------------------------------------------------------------------------------------------------------------AAATATTTTT-----AA------G-------------TAA-------------------------------------------AATAAA----------------------------------------------------------------------------------------------CA---------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491080:3056690-3057236 + C-------------CAGGCGGACCAGGAC--GTCATCAAGGCGCTGCAGCGGTG-CCGCGATGAAGGCAAGTA-T-ATA---TCATCATATAGTCATCATCTGAGCATTTTCGGTACTG--TTTAAT------------------------TAGTCGCACTTAACTC-C--------------------------------------------TATTAG-CT-----AGCTCTCTG-------------TAAGTGGATTATGC-ACAT-ACATTTAATTTTTGTTG---------------------------TTATATTAATAACTTCTCTTA-------------------TACACATA------TTTTCAAGCAATATAA----------TAAAAGCATAGATAAAA------------------------------------------------CATAATACTGACAAACAAAAAT----------------TGG----CCTATG--T--ATTCAACATTTTTTTGTAAAAAAAAAACATATATATATATTTTATTAAGGAAACCTAATTACAAAATTCAACCTATATTTATAGATGATTTTTT----TGATTTG--------CTGCAAAGATACGATTTTTCAACCTTTTAAGAGTAAACATTGAAAACGTTTAATTGGTTTATTTTGGCTCCTTGAAACATTTAAATTTAATACCA-------------------------AACTTTTAAAATAATGTCGT----ATGCTTCCCCGCAGGCATCAAGCGCTTGGACCTGAGCAAATCCTCGATCACAGTGATTCCCAGC
droRho1 scf7180000778002:43270-43769 + C-------------CAGGCCGACCAGGAC--GTCATCAAGGCGCTGCAGCGATG-CCGTGATGAAGGCAAGTA-A-A----ATCATT--------------------TTATTAGCACCGTATTTAA------------------------CTAGACACAGCAAACTC-C--------------------------------------------AATATG-TT-----AA------G-------------TAAGTGGAATAAGTCCCATGACAAACAATTTATAATGCAAATAAGGAACCAAGTTAAACCGAAAATATATAAATA-TTTTTCTTAAAACAGGAGTCAGCGGTTTTACACAAAAATAATATTATAAGCAATATAA----------CACA---------------------------------------------------------------------------------------------------AGG----CCAAAA--TACATTCCATAATT---TATAAAAAAA--ATGTATATA-----------------GCTTAAGTAC-----TTAACCAAAATTTATT---TCTTTTTTTAATTAATTTG--------TTA-------------------------------AAAC-TTGA-AATGTTT------TTTTTTTTAACTTTTTAAAACATTTT--TTCGGTACTAAACTTATACCAGCTATAATTTTAACAACCTGTATAATATTCTCGT----ATGCTTCCCCGCAGGCATCAAGCGCTTGGACCTGAGCAAATCCTCGATCACGGTGATTCCCAGC
droFic1 scf7180000453912:2254897-2254979 + C-------------CATGTTAACAATAAT--TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GTCA-TTCCCTTAGGAATCAAGCGCTTGGACCTGAGCAAGTCCTCGATCACGGTGATTCCCAGC
droKik1 scf7180000302461:1309028-1309086 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCGCAGGCATCAAGCGCTTGGACCTAAGCAACTCCTCGATCACTGTGATCCCCAGC
droAna3 scaffold_13340:10435744-10435844 - C-------------CAGGCGGATCAGGAC--GTGATCAAGGCGCTTCAGCGGTG-TCGCGATGAAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-TCCTGACAATCATAAAGCCAAT-------------ATCT---CCAATGTAGTTCTTGAT
droBip1 scf7180000396691:3129001-3129101 - GTTCTTGATCTGAATAGTGAAACTATAAT--GTAATCAAAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGCAGGAATTAAACGTCTCGACCTGAGCAAATCTTCCATCACGGTTATTCCCAGC
dp5 2:9202357-9202415 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGCAGGCATCAAGCGACTGGACCTGAGCAAATCCTCAATCACGGTGATACCCAGC
droPer2 scaffold_0:3009678-3009736 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGCAGGCATCAAGCGACTGGACCTGAGCAAATCCTCAATCACGGTGATACCCAGC
droWil2 scf2_1100000004902:1825306-1825363 - T-------------CAGGCTGATCAGGAT--GTGATTAAAGCGCTTCAACGCTG-TCGCGATGAAGGTAAGGA-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:14333377-14333488 - T-------------AAGTGGAATCGGACCAAATAATCAACC---------------------------------------AAT--------------------GATATT-----------------------TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----TGGATTTACTTTCTGTTAGGCATCAAGCGCTTGGACTTGAGCAAATCCTCTATCACTGTTCTACCCAAT
droMoj3 scaffold_6540:17751388-17751454 - T-------------CAGGCGGATCAGGAT--GTGATCAAGGCATTGCAGCGGTG-CCGTGACGAAGGTGAGTT-G---------TCCAAGCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14830:5632997-5633317 + C-------------CAGGCGGATCAGGAT--GTGATCAAGGCACTGCAACGTTG-CCGAGACGAAGGTAAGTC-G-A----AT-----------------------------------------------------------------------ACACAGCAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATAGTATATATAATTGAAAGCATAGTTCAATTTAAATTCGAGAAATTCTCAATAAATAAACTTTAATTTTAAAATGAAACAA---CTTGGCAAATTAAAATAATAGATTGTTTTATACGA--TACCTAAA--ATC-----------------------------------------------------TGAACCCACATTTTTTAATGTGT-------------------------ATTAGCATGGATCTTTA----------------------------------------------------------------------------------------------------------------T--------TCAAATGC-----TGTCCTTGTTTACCCATAGGCATCAAGCGTCTGGACCTGAGCAAATCCTCCATCACTGTGCTGCCCAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGCTGCAGCGGTG-CCGTGATGAAGGCAAGTA-C-TTT----GCCCATACTATTATCATTCGCATATT-----------------------TCTTGATAAAATAAGAAACATGGCGCATTAAGCTTTTTAAGCATTTTTGT-------TACCGACCTCAAAATTAACATGCAAATATATATATATAAA------AACCATACATAGTAGAATTGGAATAGATGCTAGTCTTTACAA--------ACAAACAAA---ATTA----------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------TGATTTACTCAAA--AAT-----------------------------------------------------TCATTTTACAAATTTGAATTTGTTTTTA-AGATGAATTAAG----TGAATCA--------CTTCA----------------------------------------------------------------------------------------------------------------TACAACC-ATGTAATGATTTTAT----ATGC-TCCCCACAGGCATCAAGCGCTTGGACTTGAGCAAATCCTCCATCACGGTGATCCCCAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................CGACCAGGAT--GTCATCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00402200000000000000
..........................................GCTGCAGCGGTG-CCGTGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
........................................GCGCTGCAGCGGTG-CCGTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
droSec2
C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGCTGCAGCGGTG-CCGTGATGAAGGCAAGTA-C-TTT----GCCTATACTATTATCATACGCATATTTCCGTTTCAA--TTTAATATTTTTCTGGATGAAATAAGAATCATGGCGCATGAAGCTT-T-----------GTCCCTTGCCGCCGACCTCAAAATTAACTTGCAAATATAT--ATATTAA------AACTATACATAGTAGAATTGGAATAGATGCTAGTCTTTACAA--------ACAAACAAA---ATTA----------------------------------------------------------------------------------------------TA---------------------------------------------------------------------------------------------------TGATTTACTCAAA--AAT-----------------------------------------------------TCATTTTACAAATTTGAATTGGTTTATA-AGATGAATTAAG----TGAATCA--------CTTCA----------------------------------------------------------------------------------------------------------------TACAACC-ATGTAATGATTTTAT----ATGC-TCCCCACAGGCATCAAGCGCTTGGACTTGAGCAAATCTTCGATCACGGTGATCCCCAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................GAT--GTCATCAAGGCGCTGCAGCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..........................................GCTGCAGCGGTG-CCGTGATGAAGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGCTTGGACTTGAG............................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTTTAT----ATGC-TTT........................................................2050.2010010
dm3
C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGCTGCAGCGCTG-TCGTGATGAAGGCAAGTA-C-A-----------------------------------------A--TTTAATATTTTTCTTGATGAAATAAGAAACATGGCGCAGAAAGCTT-T-----------GTCCCTTACCACCGAGTTCAAAATTAACTTGGAAATATAT--ATATTAA------GGCCATAATTAGCAGAATTGAAATAGAAGCTAGTCAATACAT--------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--ATT-----------------------------------------------------TCATT-TACTAATTAGAATTTGTTAATA-AGATGAATTAAG----TTAATAA--------CTTCA----------------------------------------------------------------------------------------------------------------TACAACC-ATATAATGATTTTAT----ACGC-TCCCCACAGGCATCAAGCGCTTGGACTTGAGCAAATCTTCGATCACGGTGATCCCCAGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................AGCGCTG-TCGTGATGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000020000000000000000000100000000000000001000000000
....................GACCAGGAT--GTCATCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...........................................CTGCAGCGCTG-TCGTGATGAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................GACCAGGAT--GTCATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGCCGACCAGGAT--GTCATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGACTTGAGCAAATCTTCG..................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGGAT--GTCATCAAGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGCAAATCTTCGATCACGGTG.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CAGGCCGACCAGGAT--GTCATCAAGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............AGGCCGACCAGGAT--GTCATCAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................GCTGCAGCGCTG-TCGTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................CGACCAGGAT--GTCATCAAGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAAGCGCTTGGACTTG..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................TGCAGCGCTG-TCGTGATGAAGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGCCGACCAGGAT--GTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGCTGCAGCGCTG-TCGTGATGAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................GACCAGGAT--GTCATCAAGGCGCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAT--GTCATCAAGGCGCTGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................CTGCAGCGCTG-TCGTGATGAAGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAT--GTCATCAAGGCGCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................GCAGCGCTG-TCGTGATGAAGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAT--GTCATCAAGGCGCTGCAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............AGGCCGACCAGGAT--GTCATCAAGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................CCGACCAGGAT--GTCATCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................GCTGCAGCGCTG-TCGTGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACTTGAGCAAATCTTCGATCACG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AGGCCGACCAGGAT--GTCATCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGGAT--GTCATCAAGGCGCTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................GTCAATACAT--------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--ATT-----------------------------------------------------TCATT-TAC...................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGAGCAAATCTTCGATC...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGCAGCGCTG-TCGTGATGAAGGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................GCTGCAGCGCTG-TCGTGATGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................CGCTG-TCGTGATGAAGGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACTTGAGCAAATCTTC...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCGATCACGGTGA........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CATCAAGGCGCTGCAGCGCTG-TCGTGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCTTCGATCACGGTGATCCCCAGC2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-ATATAATGATTTTAT----ACGC-T..........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGCTGCAGCGCTG-TCGTGATGAAGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................AGGAT--GTCATCAAGGCGCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GACCAGGAT--GTCATCAAGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................TGCAGCGCTG-TCGTGATGAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTCGATCACGGTGATCCCCAGC2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCATCAAGGCGCTGCAGCGCTG-TCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................GCTG-TCGTGATGAAGGCATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCGCTTGGACTTGAGC...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................CCGACCAGGAT--GTCATCAAGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATCACGGTGATCCCCAGC2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCGCTTGGACTTGAG............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAATTTGTTAATA-AGATG..........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTTAT----ACGC-TCCCCACAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGAGCAAATCTTCGATCACGGTG.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................ATAAGAAACATGGCGCAGAAAGCTT-T-----------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGCCGACCAGGAT--GTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GACCAGGAT--GTCATCAAGGCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGCTTGGACTTGAGC...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................CGACCAGGAT--GTCATCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
C-------------CAGGCCGACCAAGAT--GTCATCAAGGCGTTGCAGCGGTG-CCGCGATGAAGGCAAGTA-T-TTC----GACCATGTCGATATCA--CGGATATTTCCGTTTTCA--TTTAATGCTTTCCTGAATGAAGTAAGAAACATGACACATCAAACTTTT-----------ATCTCATGTCACCAGCATTAATATAAAGTTGCAAATATATTT-----AA------G-------------GAATTGGAATGGCTGCTAGGCTATACAA--------ACAAAGAAAGAATTAA----------------------------------------------------------------------------------------------CA---------------------------------------------------------------------------------------------------AGA----CTAAAA--TAC-----------------------------------------------------CCATTTTATAAAT--------------------------------TGATTCA--------CTTTA----------------------------------------------------------------------------------------------------------------TACAACCTCTGTAATGATTTTAT----ATGC-TCCCCGCAGGCATCAAGCGCTTGGACTTGAGCAAATCCTCGATCACGGTGATCCCCAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................AT--GTCATCAAGGCGTTGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020002000
...............................GTCATCAAGGCGTTGCAGCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
..........................................GTTGCAGCGGTG-CCGCGATGAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
............................................TGCAGCGGTG-CCGCGATGAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAAATCCTCGATCACGGT..........2211.0011000000
droYak3
C-------------CAGGCCGACCAGGAT--GTCATCAAGGCGTTGCAGCGTTG-CCGCGATGAAGGCAAGTA-T-TTG----GACCTTATGGTTATCATACGCGTATTTCCTTTTTTA--TTTAATCTTTGTCTGAATGAAATAAGAAACATGACA----------------------------------CCAGGATTAATATTAACTTGCAAATGAAT------TAA------GG--ATGCTCATTATAATTGGAATGGATGCTTGTCTATACGC--------GTAAAGAAAGAATTTA----------------------------------------------------------------------------------------------AA---------------------------------------------------------------------------------------------------AAACTGTCTCGAAATAAT-----------------------------------------------------TCATTTT---AATTGGAATTTGTTTTAA-AGATGAAAAACT----TGATTCA--------CTTTA----------------------------------------------------------------------------------------------------------------TACAACATCTGTAATGCTTTTGT----ATGC-TCCCCGCAGGCATCAAGCGCTTGGACTTGAGCAAATCTTCGATCACGGTGATCCCCAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGCTTGGACTTGAGC...........................1912.00202000000000
...................CGACCAGGAT--GTCATCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................CGACCAGGAT--GTCATCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................GAT--GTCATCAAGGCGTTGCAGCGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGATCACGGTGATCCC....1911.00100100000000
...................CGACCAGGAT--GTCATCAAGGCGTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................AT--GTCATCAAGGCGTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCTTCGATCACGGT..........1911.00100000010000
...............................GTCATCAAGGCGTTGCAGCGTTG-CCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGTTTTAA-AGATGAA........................................................................................................................................................................................................................................2011.00101000000000
droEug1
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGTTTTTAT----ATGGTTTCCCGCAGGCATCAAACGCTTGGACCTGAGCAAATCCTCAATCACAGTGCTCCCTAGCSizeHit CountTotal NormTotal
No Reads
droBia1
C-------------CAGGCGGACCAGGAT--GTCATCAAGGCGCTGCAGCGATG-TCGCGATGAAGGCAAGTGTTTTTCGATT--------------------CATTTT-----------------------AACAAGTGAATTAATAACCATGACACATCAAAGTTAA-----------AACGCTTATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACCGGCACTTGAAA---AGGAAAACCCATATTATT-TTCTTAAAAACSizeHit CountTotal NormTotal
No Reads
droTak1
C-------------CAGGCGGACCAGGAT--GTCATCAAGGCGCTGCAGCGATGGCCGGGATGAAGGCAAGTT-ATTTCGAAT--------------------A------------------------------------------------------------------------------------------------------------AAATATTTTT-----AA------G-------------TAA-------------------------------------------AATAAA----------------------------------------------------------------------------------------------CA---------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
C-------------CAGGCGGACCAGGAC--GTCATCAAGGCGCTGCAGCGGTG-CCGCGATGAAGGCAAGTA-T-ATA---TCATCATATAGTCATCATCTGAGCATTTTCGGTACTG--TTTAAT------------------------TAGTCGCACTTAACTC-C--------------------------------------------TATTAG-CT-----AGCTCTCTG-------------TAAGTGGATTATGC-ACAT-ACATTTAATTTTTGTTG---------------------------TTATATTAATAACTTCTCTTA-------------------TACACATA------TTTTCAAGCAATATAA----------TAAAAGCATAGATAAAA------------------------------------------------CATAATACTGACAAACAAAAAT----------------TGG----CCTATG--T--ATTCAACATTTTTTTGTAAAAAAAAAACATATATATATATTTTATTAAGGAAACCTAATTACAAAATTCAACCTATATTTATAGATGATTTTTT----TGATTTG--------CTGCAAAGATACGATTTTTCAACCTTTTAAGAGTAAACATTGAAAACGTTTAATTGGTTTATTTTGGCTCCTTGAAACATTTAAATTTAATACCA-------------------------AACTTTTAAAATAATGTCGT----ATGCTTCCCCGCAGGCATCAAGCGCTTGGACCTGAGCAAATCCTCGATCACAGTGATTCCCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
C-------------CAGGCCGACCAGGAC--GTCATCAAGGCGCTGCAGCGATG-CCGTGATGAAGGCAAGTA-A-A----ATCATT--------------------TTATTAGCACCGTATTTAA------------------------CTAGACACAGCAAACTC-C--------------------------------------------AATATG-TT-----AA------G-------------TAAGTGGAATAAGTCCCATGACAAACAATTTATAATGCAAATAAGGAACCAAGTTAAACCGAAAATATATAAATA-TTTTTCTTAAAACAGGAGTCAGCGGTTTTACACAAAAATAATATTATAAGCAATATAA----------CACA---------------------------------------------------------------------------------------------------AGG----CCAAAA--TACATTCCATAATT---TATAAAAAAA--ATGTATATA-----------------GCTTAAGTAC-----TTAACCAAAATTTATT---TCTTTTTTTAATTAATTTG--------TTA-------------------------------AAAC-TTGA-AATGTTT------TTTTTTTTAACTTTTTAAAACATTTT--TTCGGTACTAAACTTATACCAGCTATAATTTTAACAACCTGTATAATATTCTCGT----ATGCTTCCCCGCAGGCATCAAGCGCTTGGACCTGAGCAAATCCTCGATCACGGTGATTCCCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
C-------------CATGTTAACAATAAT--TTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----GTCA-TTCCCTTAGGAATCAAGCGCTTGGACCTGAGCAAGTCCTCGATCACGGTGATTCCCAGCSizeHit CountTotal NormTotal
No Reads
droKik1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCGCAGGCATCAAGCGCTTGGACCTAAGCAACTCCTCGATCACTGTGATCCCCAGCSizeHit CountTotal NormTotal
No Reads
droAna3
C-------------CAGGCGGATCAGGAC--GTGATCAAGGCGCTTCAGCGGTG-TCGCGATGAAGGTAAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-TCCTGACAATCATAAAGCCAAT-------------ATCT---CCAATGTAGTTCTTGATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GTTCTTGATCTGAATAGTGAAACTATAAT--GTAATCAAAAAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGCAGGAATTAAACGTCTCGACCTGAGCAAATCTTCCATCACGGTTATTCCCAGCSizeHit CountTotal NormTotal
No Reads
dp5
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGCAGGCATCAAGCGACTGGACCTGAGCAAATCCTCAATCACGGTGATACCCAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCGACTGGACCTGAGCAAATCCT....................2811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATCCTCAATCACGGT..........1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGACCTGAGCAAATC......................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGGACCTGAGCAAATCCTCAAT................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCGACTGGACCTGAGCA..........................2211.0010000100000
droPer2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGCAGGCATCAAGCGACTGGACCTGAGCAAATCCTCAATCACGGTGATACCCAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGACTGGACCTGAGCAA.........................2113.003300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGCGACTGGACCTGAGCAAAT.......................2512.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGCGACTGGACCTGAGCA..........................2111.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGGACCTGAGCAAATCCTC...................2311.001100000
droWil2
T-------------CAGGCTGATCAGGAT--GTGATTAAAGCGCTTCAACGCTG-TCGCGATGAAGGTAAGGA-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................CAGGAT--GTGATTAAAGCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00400130
..............................................CAACGCTG-TCGCGATGAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300120
.....................ATCAGGAT--GTGATTAAAGCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
..........................GAT--GTGATTAAAGCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
................................................ACGCTG-TCGCGATGAAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
..............CAGGCTGATCAGGAT--GTGATTAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
......................TCAGGAT--GTGATTAAAGCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
........................AGGAT--GTGATTAAAGCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............AGGCTGATCAGGAT--GTGATTAAAGCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
droVir3
T-------------AAGTGGAATCGGACCAAATAATCAACC---------------------------------------AAT--------------------GATATT-----------------------TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC-----TGGATTTACTTTCTGTTAGGCATCAAGCGCTTGGACTTGAGCAAATCCTCTATCACTGTTCTACCCAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
T-------------CAGGCGGATCAGGAT--GTGATCAAGGCATTGCAGCGGTG-CCGTGACGAAGGTGAGTT-G---------TCCAAGCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................GAT--GTGATCAAGGCATTGCAGCGGTG-C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droGri2
C-------------CAGGCGGATCAGGAT--GTGATCAAGGCACTGCAACGTTG-CCGAGACGAAGGTAAGTC-G-A----AT-----------------------------------------------------------------------ACACAGCAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATAGTATATATAATTGAAAGCATAGTTCAATTTAAATTCGAGAAATTCTCAATAAATAAACTTTAATTTTAAAATGAAACAA---CTTGGCAAATTAAAATAATAGATTGTTTTATACGA--TACCTAAA--ATC-----------------------------------------------------TGAACCCACATTTTTTAATGTGT-------------------------ATTAGCATGGATCTTTA----------------------------------------------------------------------------------------------------------------T--------TCAAATGC-----TGTCCTTGTTTACCCATAGGCATCAAGCGTCTGGACCTGAGCAAATCCTCCATCACTGTGCTGCCCAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:59 PM