dsi_16852

CDS [3r_542852_544660_-]; exon [3r_542852_544660_-]; intron [3r_542542_542851_-]

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	-

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAACGATAACTACCGCAAAACATTCCGATCTGTGGACGAAAACTCGAAGGGTGAGTAATAAATACCATTCAATTTCAACCATTCAAAGGGTTACTAGTACCCATTCATATTAGCCACATTGCTCCAATTTTGATGTTCAATAACACTTTTTAACTACTTTTAACTAAAACGTCGAATTTCCGTGACTGGTGAAGATATTCAATAGGTAAAGTTAAGGTTTCCGGCCCTTAAAGACTAGAAATTCTTGATC ************************************************(((.(((.....))))))....(((((.(((.(((..((((.......)))).........(((......))).....(((((((((..............................)))))))))......))).))))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M024 male body
........................................................................................................................................................................................................................GTTTCCGGGCCTTAAA..................	16	1	1	1.00	1	1	0	0	0	0
..............................................................................................................................ATTTTGATGTTCAATA............................................................................................................	16	0	2	0.50	1	0	1	0	0	0
..................................................................................TAAAAGGATAACTAGTACCCAT..................................................................................................................................................	22	3	2	0.50	1	0	0	1	0	0
............................................CGAACGGTGAGTAATA..............................................................................................................................................................................................	16	1	3	0.33	1	0	0	0	1	0
......................................................................................................................................................................................................................AGGTTTCCGGGCTTTAAA..................	18	2	8	0.13	1	1	0	0	0	0
.................................................................................................................................................................................TTACGTGACTGATGAAGAAA.....................................................	20	3	8	0.13	1	0	0	0	0	1
........................................................................................................................................................................................................................GTTTCCGGCCCTTGA...................	15	1	10	0.10	1	1	0	0	0	0
.....................................................................................................................................................................................................................AAGGTTTCCGGGCTTTA....................	17	2	11	0.09	1	1	0	0	0	0
........................................................................................................................................................................................ACTTGTCAAGATATTCTATA..............................................	20	3	12	0.08	1	0	1	0	0	0
.....................................................................................................................................................................................................................AAGGCTTCCGGGCTTTAAA..................	19	3	20	0.05	1	1	0	0	0	0
.......................................................................................................................................................................................................................GGTTTCCGGGCTTTAAA..................	17	2	20	0.05	1	1	0	0	0	0

CTTGCTATTGATGGCGTTTTGTAAGGCTAGACACCTGCTTTTGAGCTTCCCACTCATTATTTATGGTAAGTTAAAGTTGGTAAGTTTCCCAATGATCATGGGTAAGTATAATCGGTGTAACGAGGTTAAAACTACAAGTTATTGTGAAAAATTGATGAAAATTGATTTTGCAGCTTAAAGGCACTGACCACTTCTATAAGTTATCCATTTCAATTCCAAAGGCCGGGAATTTCTGATCTTTAAGAACTAG ************************************************(((.(((.....))))))....(((((.(((.(((..((((.......)))).........(((......))).....(((((((((..............................)))))))))......))).))))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	O002 Head	SRR553488 RT_0-2 hours eggs	M024 male body	M053 female body	SRR553486 Makindu_3 day-old ovaries
.TTGCTATTGATGGCGTTTTGTAAGGC...............................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0
........AGATGGCGTTTTGTAAGGCTAGACAC........................................................................................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................AGTTATAGTGAAAAATTG................................................................................................	18	1	1	1.00	1	0	1	0	0	0	0	0	0
........................................TTGAGCTTCCCACTCATTA...............................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0
..........ATGGCGTTTTGTAAGGCTAGACACCT......................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................AACGGGAATTTCTGATCTTTAAGAACT..	27	2	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................................................AAATTGAGTTTGCAGCTT..........................................................................	18	1	2	0.50	1	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................TCAATTGCAAAGGCCGAG.......................	18	2	5	0.40	2	0	0	0	0	2	0	0	0
...............................................................................................................................................................................................TTCTAAAAGTTATCGATTTCAGT....................................	23	3	3	0.33	1	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................CTGCTATAAGTTATC.............................................	15	1	3	0.33	1	0	1	0	0	0	0	0	0
............................................................................................................................GTTCAAACTACAAGTTCT............................................................................................................	18	2	4	0.25	1	0	0	0	0	1	0	0	0
.......................AGGACTGACACCTGCTTTT................................................................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	2	0	0
...........................................................TTTACGGGAAGTGAAAGTTG...........................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	1	0
................................................................GGAAAGTTAAAGTTG...........................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:542652-542901 -	dsi_16852	GAAC-GATAACT---------ACCGCAAAACATTCCGATCTGTGGACGAAAACT---CGAAGGGTGAGTA---------ATAAAT----AC---CATTCAATTTCAACCATTCAA--------AGGGT---TACTAGTACCCATTCATATTA------------------------------------------------------------------------------GCCAC-----------------------------------------ATTGCT-----------CCAATTTTGAT--------------------------GTT----CAATAACACTTTTTAAC---------TAC----------TTTTAACTAAAACGT---CGA----------------------------------------------------------ATTTCCGTGACT--G-GTGAAGAT--ATTCAATAGGTA---AAGTTA-AGGTTTCCGGCCCT-TAAAGACTAGAAATTCTTGATC
droSec2	scaffold_6:708086-708328 -		GAAC-GATAACT---------ACCGCAAAACATTCCGATCTGTGGACGAAAACT---CGAAGGGTGAGTA---------ATAAAT----AC---CA--------------TTCC-GAGTGGAAAGGGT---TACTAGTACCCATTCATATTA------------------------------------------------------------------------------GTCAC-----------------------------------------ATTGCT-----------CTAATTTTGAT--------------------------GTT----CAATAACACTTTTTAAC---------TAC----------TTTTAACTAAAACGT---CGA----------------------------------------------------------ATTTCCGTGACT--G-GTGAAGAT--ATTCAATAGGTA---AAGT-TAAAGTTTCCGGCCCT-TAAAGACTAGAAATTCTTGGTC
dm3	chr3R:607859-608058 -		GAAC-GATAACT---------ACCGAAAAACATTCCGATCTGTGGACGAAAACT---CAAAGGGTGAGTT---------ATAAAT----G----------------ACCATTCA-GAGTGGAAAGGGT---TACTAG-------------------------------------------------------------------------TAT---TA------------GCAAC-----------------------------------------ATTGCT-----------CTAATTTTGAA--------------------------TTT----TAATAACAC--------------------TC------------------------------------------------------------------------------------------------ACA--G-ATACAGAT--ATTGAATAGGAA---CAAATTAGGTTTTCTGGCTCTATAAAGAATAGATATTCTTGATC
droEre2	scaffold_4929:18377088-18377263 +		TCGA-AT-------------------------------------------------------GGCGTTTG---------ATGGAT----AC---CAACCGATCT---------AA-----------AGT----------------------------------------------------GCCAAGTAAAA----------------------------------------GGC----------------------------------------------------------------TTGTT------------TTCGCTATCA----------------------------TATTGTTCATACC----ATT-----------------CATG---------------------------------------ACGT--TAAAGGATATACTA-AT----------TCGTTGATAAGTTGAAGGAACAGGTA---GAGAGAAGCCTTTCCGACCCTATAAAGTATATATATTCTTGACC
droYak3	v2_chrUn_1763:402-646 -		AAAC-CTC-------------------------TTCGGTTCGTAGAATTGAACTTTGCGTAGGGTGTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTCATACATTCTATATGGTTACTCATTTTGTGTTAGAAAAAATATCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TGATTTTTATACCCGTTACT-----------------CGTA---------------------------------------GAGT--AAAAGGGTATACTAGAT----------TCGTTGAAAAGT--ATGTAACAGGCA---GAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATC
droEug1	scf7180000408107:2662-2866 +		TAAA-GGTTATT---------A-----------------------------------------------------------------------------AATGTGACCCATTTAA--ATG------AGTGTCATTAA-------------------------------------------------------------------CTG---TATTTTCTCCATTTA-----CAAAC-----------------------------------------ATGGCT-----------CCATCTTGGAT---------------------------TACATC----TACA---------TTTTTATCATACCCGTTACT-----------------CGTA---------------------------------------GAGT--AAAAGGGTATACTAGAT----------TCGTTGAAAAGT--ATGTAACAGATA---GAAGGAAGCGTTTACGATCCTATAAAGTATATATATTCTTGATC
droBia1	scf7180000301780:36673-36891 -		GAAA-GCAAAGT---------TCTA---------------------------------------------------------AAT----ATTTCCAAAGAATTTTTACCTATCAA-----------AA---TATTAAATTTAA-------------------------------------------------------------------------------------------------------------AATACATTCATTTTAATTTA-C--ATTTTA---------CTTCTATTG--A----------ATTATAGCTATT-----GTT----A---GTTA---------GCCTAGTTATACC-GTTACT-----------------CGT-------------------------------------------------AGAGTATACAAGAT----------TTGACGGAAAGT--ATTTAACAGGTA---AAAGGAAGCCTTTCCGACCCCATTAAGTATATATATTCTTAATC
droTak1	scf7180000415662:4645-4845 +		TTGA-TGGATCA-------------------------GTAATCAGTAATGA------------------------------------------------AGTTTGTTCTGCT-GA------ACGCAGC---CATTGGCTACCTTTTACTTTA------------------------------------------------------------------------------CCCAC-----------------------------------------ACTCAA-----------AAAAACTTGTT----------------TTTTTATGATG----TC----CGTA---------TCTTAATTATACCCTTTAAT-----------------CGTA---------------------------------------G-------------------AAT----------TCGTCGAAAATT--ATGAAACAGGTA---GAGGAAAGCGTTTCCCACCCTAATAAGTA--TATATTCTTTATC
droEle1	scf7180000491238:378220-378385 -		CAAT-TTCAACA---------ATA----------------------------------------------------------------------------------------------------------------ATATCAATTTTTATT---------------------------------------------------------------------------------TGT-----------------------------------------GTGTTTTTAATTTGGCTTAAACAG---------------------------------TATT-----------TATAAC---------TAT----------ATTTAGTTGGATATTTGTA---------------------------------------TAGCATTT------AAAGCAAAA----------TTG-CAGAAGAT--GTT--ATAATTAAGTGAAGGAGCCATTTCCGACCCTA-------TATATGTTCTGGATC
droRho1	scf7180000777206:241594-241851 -		AAAT-GGTAATTTAA------ATCCCAGAACATACT-------GTATGAGAACTT--CGAGGGGTGATAAAAAAGTGAAATAACT----AG---CC-------T-------TC-------------AAT----------------------------------------------------GGCAGGAAAAATATA--------ACGAAGTTT---TA----------------TTTGAGCTGAAATCATTAATTTT----GTTAC----------AAT-----------------------------------------------------CCATC----TACT---------GGTTAATTATACCCGTTACT-----------------CGTA---------------------------------------GAGT--AAAAGGGTATATTGTAT----------TCGTGCAAAAGT--ATGTAACAGCTA---GAAGGAAGCGTTTCCGACCCTAAAAAGTATATATATTCTTGATC
droFic1	scf7180000453903:213074-213129 -		CAAC-GACAACT---------ACCGCAAGACCTTCCGATCCGTCGACGAGAACT---CGAAGGGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302471:1091629-1091777 +		ACTA-GTCT-----------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------GTGTCAATTTATCATTTTGCT-----------TTAATTGTGTT--------------------------GTT----A---AGGA---------TGTTTTTTATACCCTT-----------------------------------------------------------------------GCAGGGTATTATAATT----------TCAGTCAGAAGT--TTGCAACGCAGT---GAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATC
droAna3	scaffold_13335:3147773-3147999 +		CTCG-AAGGGTATAA-----------------------------------------------------AT---------ATAAAC----A---------AATTGTTAC---TTGA--------ATATT-------------------------------------------TGTTTTTTTT-TAT-------------------------------------GTATAGTAGAAAT-----------------------------------------ATAAAA-----------AAAATTTTTACGATTAATAAATTG---------------------------------TTAC---------CAC----------TTTTA--TAACT---CTTTGAACTCAGAAGTGACAAACATGTGCTCGCCACTGTA-TGTCAC--TGAAAGACATACA------------------------------GCTCCGCAGT---GAAGGAGACACCTCCGACCCTATAAAGTATATATATTCTTGATC
droBip1	scf7180000395973:169733-169929 -		AAAA-CCGATGG-------TTT-G-------------------------------------------CCA---------TTAATT----TT---CAGCTAATCTCAATCAGTCAA--ACGGCCAT-GGT----------------------------------------------------CCCTGGGAAAATTCA--------CTCGAGTTT---TT-----------------------------------------------------------------------------------------------------CCGACCA---------------TTTT---------TGTTTTTTATACCCTT----------------------GC-----------------------------------------------AGAGGGTATTATAATT----------TTGTCCAAAAGT--GTGCAACGCAGT---GAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATC
dp5	Unknown_group_790:960-1194 +		ATCA-AT------------------------------------GGTCTAAAATT---AGATGGGCAGAGC---------TA---TAAGTCT---TAGTTACTCAACATTATTCAA--------CGGAA---TATCAAAATTGAGTAATAGGA------------------------------------------------------------------------------ACGAT-----------------------------------------TTTTCT-----------CTTACG-TCTT--------------------------AT---------TAAG---------TTTTTTTTATAACCGATACT-----------------CAAA------------------------------------AT-GAGT--ATTGGGGTATATTAGATTTGTGGTAAA---AGTGGATGT--GTGTAACGTCCA---GAAGGAATCGTTTGCGACCCTATAAAGTATATATATTTTTGATC
droPer2	scaffold_3:4966354-4966425 +		AAAC-AATAAAT---------ACCGCAAGACCTTCGAGCCAACAGATGAAAACT---CAAGGGGTAAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATACCGATCG----------------------AT
droWil2	scf2_1100000004515:1166538-1166725 -		TGAATAATAGTT---------T-------------ACATATATCGACAACAATT---CAGTGGGTTAAT-----------------------------------------------------------------------CCATTCAC-----------------------------------------------------------------------------------AAAC------------------------------------------------------------AAATTTAC----------------CCTATCGTAATATT----TATAAGCA---------CATTTGTTATACCCTT----------------------GC-----------------------------------------------AGAGGGTATTTTAAAA----------TTGGTCAGATGT--TTGTAACGCACA---GAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATC
droVir3	scaffold_13050:608819-609042 -		TACT-GCAAAAT---------A-------------------ATTGGCGACGATT---CGAGGAGCGTGTT---------TGGAGT----TT--------------------------------------------------------------------------------TGCCATGTTT-TAACCAAACGGGC-GGTGGTAACAG---CAT---AC----GCATAGCAGTCAC-----------------------------------------TTAAGC-----------CAGATTTCAC--------------------------------TC----TGTA---------TGTTTTTTATACCCTGAAC--------------------------------------------------------------------------TATATTGTATTTGTGCGAAA---TCCAAATGT--ATGTAACAGGCA---GAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATC
droMoj3	scaffold_6473:5934148-5934367 -		AACA-AATAATACTAACAGTTT-C-------------AT------------------------------------------------------------------AATCATTCAT--------AAGGC---TA--------------------------------------TGCCTATTAT-TTAGCAAGAAAGT-TATGATCA-------------------------------CA--------------AATTTC--------------------------------------------ATCGATTTCCACTTTA------------------------TATC---------CACTTTTTATACCCTGAACCCATTTTAAATGAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------TTGTTGAAATGT--ATGTAACAGGCA---GAAGGAGGCGTGGCAGACCCCACAAAGTATACATATTCTTGATC
droGri2	scaffold_14906:6030415-6030551 +		ATTA-ACAAAAT-------T-ATGACAATTATTCTTGGCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----CAATGACATTTTGTTAT---------GA-----------TTTTAACTGGGTAA---------------------------------------------------AAAGTGTAT------------------------AATGT--ATGTAACAGGCA---GAAAAAAGCACCTCGGAACCCATAAAGTATATATATTCTTGATC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GAAC-GATAACT---------ACCGCAAAACATTCCGATCTGTGGACGAAAACT---CGAAGGGTGAGTA---------ATAAAT----AC---CATTCAATTTCAACCATTCAA--------AGGGT---TACTAGTACCCATTCATATTA------------------------------------------------------------------------------GCCAC-----------------------------------------ATTGCT-----------CCAATTTTGAT--------------------------GTT----CAATAACACTTTTTAAC---------TAC----------TTTTAACTAAAACGT---CGA----------------------------------------------------------ATTTCCGTGACT--G-GTGAAGAT--ATTCAATAGGTA---AAGTTA-AGGTTTCCGGCCCT-TAAAGACTAGAAATTCTTGATC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................ATTTTGAT--------------------------GTT----CAATA......................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GAAC-GATAACT---------ACCGCAAAACATTCCGATCTGTGGACGAAAACT---CGAAGGGTGAGTA---------ATAAAT----AC---CA--------------TTCC-GAGTGGAAAGGGT---TACTAGTACCCATTCATATTA------------------------------------------------------------------------------GTCAC-----------------------------------------ATTGCT-----------CTAATTTTGAT--------------------------GTT----CAATAACACTTTTTAAC---------TAC----------TTTTAACTAAAACGT---CGA----------------------------------------------------------ATTTCCGTGACT--G-GTGAAGAT--ATTCAATAGGTA---AAGT-TAAAGTTTCCGGCCCT-TAAAGACTAGAAATTCTTGGTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GAAC-GATAACT---------ACCGAAAAACATTCCGATCTGTGGACGAAAACT---CAAAGGGTGAGTT---------ATAAAT----G----------------ACCATTCA-GAGTGGAAAGGGT---TACTAG-------------------------------------------------------------------------TAT---TA------------GCAAC-----------------------------------------ATTGCT-----------CTAATTTTGAA--------------------------TTT----TAATAACAC--------------------TC------------------------------------------------------------------------------------------------ACA--G-ATACAGAT--ATTGAATAGGAA---CAAATTAGGTTTTCTGGCTCTATAAAGAATAGATATTCTTGATC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................TTCCGATCTGTGGACGAAAACT---CAAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTCTGGCTCTATAA...................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CATTCCGATCTGTGGACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTCCGATCTGTGGACGAAAACT---CAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ATTCCGATCTGTGGACGAAAACT---CAAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AAACATTCCGATCTGTGGACGAAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TAATTTTGAA--------------------------TTT----TAATC......................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TCGA-AT-------------------------------------------------------GGCGTTTG---------ATGGAT----AC---CAACCGATCT---------AA-----------AGT----------------------------------------------------GCCAAGTAAAA----------------------------------------GGC----------------------------------------------------------------TTGTT------------TTCGCTATCA----------------------------TATTGTTCATACC----ATT-----------------CATG---------------------------------------ACGT--TAAAGGATATACTA-AT----------TCGTTGATAAGTTGAAGGAACAGGTA---GAGAGAAGCCTTTCCGACCCTATAAAGTATATATATTCTTGACC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

AAAC-CTC-------------------------TTCGGTTCGTAGAATTGAACTTTGCGTAGGGTGTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTCATACATTCTATATGGTTACTCATTTTGTGTTAGAAAAAATATCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TGATTTTTATACCCGTTACT-----------------CGTA---------------------------------------GAGT--AAAAGGGTATACTAGAT----------TCGTTGAAAAGT--ATGTAACAGGCA---GAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................TTCGTAGAATTGAACTTTGCGTAGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	1.40	28	0	1	9	0	0	0	1	0	0	0	17
................................................TGAACTTTGCGTAGGGTGTGGT---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.40	28	0	12	16	0	0	0	0	0	0	0	0
................................................................TGTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................	26	20	1.40	28	0	8	20	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGT---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	1.15	23	0	9	5	9	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGT---------GCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.90	18	0	16	2	0	0	0	0	0	0	0	0
.....................................................................T---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTCA..................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.80	16	0	11	5	0	0	0	0	0	0	0	0
..............................................................................................................................................................TTCTATATGGTTACTCATTTTGTGT.....................................................................................................................................................................................................................................................................................................................................................................	25	20	0.75	15	0	13	0	2	0	0	0	0	0	0	0
................................................................................................................................................................................................TATCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TGA.......................................................................................................................................................................................	28	20	0.70	14	0	6	0	0	0	0	0	0	0	0	8
..........................................TAGAATTGAACTTTGCGTAGGGTGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.65	13	0	8	5	0	0	0	0	0	0	0	0
...............................................TTGAACTTTGCGTAGGGTGTGGT---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.65	13	0	3	9	0	0	0	1	0	0	0	0
.......................................TCGTAGAATTGAACTTTGCGTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.60	12	0	9	2	0	0	0	1	0	0	0	0
............................................GAATTGAACTTTGCGTAGGGTGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.55	11	0	11	0	0	0	0	0	0	0	0	0
...............................................TTGAACTTTGCGTAGGGTGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.55	11	0	5	0	4	0	0	2	0	0	0	0
..........................................TAGAATTGAACTTTGCGTAGGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.55	11	0	0	11	0	0	0	0	0	0	0	0
..........................................TAGAATTGAACTTTGCGTAGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.50	10	0	0	4	4	0	0	2	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.50	10	0	3	1	6	0	0	0	0	0	0	0
................................................................TGTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCT......................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.45	9	0	0	8	1	0	0	0	0	0	0	0
...............................................TTGAACTTTGCGTAGGGTGTGGT---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	3	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................TACATTCTATATGGTTACTCATTTTG........................................................................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGT---------GCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	5	0	1	0	0	0	0	0	0	0
...............................................TTGAACTTTGCGTAGGGTGTGGT---------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.30	6	0	3	2	1	0	0	0	0	0	0	0
............................................GAATTGAACTTTGCGTAGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0
............................................GAATTGAACTTTGCGTAGGGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	3	1	1	0	0	0	0	0	0	0
........................................CGTAGAATTGAACTTTGCGTAGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	3	1	1	0	0	0	0	0	0	0
...............................................TTGAACTTTGCGTAGGGTGTGGC---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TACTCATTTTGTGTTAGAAAAAATA..........................................................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	0	4	1	0	0	0	0	0	0	0	0
.......................................TCGTAGAATTGAACTTTGCGTAGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	3	0	0	0	0	1	0	0	0	0
................................................................TGTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTT.....................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................T---------------------------------------TGA---------TGATTTTTATACCCGTTAC.......................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.20	4	0	2	1	1	0	0	0	0	0	0	0
............................................GAATTGAACTTTGCGTAGGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	2	1	1	0	0	0	0	0	0	0
..........................................TAGAATTGAACTTTGCGTAGGGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	3	0	0	0	0	1	0	0	0	0
......................................TTCGTAGAATTGAACTTTGCGTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
.......................................................TGCGTAGGGTGTGGT---------GCAAAC----A---------AATC-------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	1	2	1	0	0	0	0	0	0	0
...............................................................................GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTCA..................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...............................................TTGAACTTTGCGTAGGGTGTGGT---------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGT---------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	0	1	2	0	0	0	0	0	0	0
..................................................................TGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTT.....................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.......................................TCGTAGAATTGAACTTTGCGTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
.....................................................................T---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTCAT.................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	1	2	0	0	0	0	0	0	0	0
.........................................GTAGAATTGAACTTTGCGTAGGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	1	0	0	0	0	2	0	0	0	0
.....................................................................................................TC-------------------------------------CAATTCGCCTTTCATACATTCTATA.......................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................TGCGTAGGGTGTGGT---------GCAAAC----A---------AATC-------------------------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................TGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTC...................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................CGTAGAATTGAACTTTGCGTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................TAGAATTGAACTTTGCGTAGGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTCATA................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................GGTGTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..AC-CTC-------------------------TTCGGTTCGTAGAATTGAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
AAAC-CTC-------------------------TTCGGTTCGTAGAATTGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TGA.......................................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.AAC-CTC-------------------------TTCGGTTCGTAGAATTGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................TAGAATTGAACTTTGCGTAGGGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TGAT......................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TAGAATTGAACTTTGCGTAGGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................TTTGCGTAGGGTGTGGT---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................T---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTT....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................................TGTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGC........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................TTTGCGTAGGGTGTGGT---------GCAAAC----A---------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TGATT.....................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................TC-------------------------------------CAATTCGCCTTTCATACATTCTA.........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................TCGGTTCGTAGAATTGAACTTTGCGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................GAACTTTGCGTAGGGTGTGGT---------GCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................TTTGCGTAGGGTGTGGT---------GCAAAC----A---------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................T---------GCAAAC----A---------AATC-------------------------------------CAATTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..AC-CTC-------------------------TTCGGTTCGTAGAATTGAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................TC-------------------------------------CAATTCGCCTTTCATACATT............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.AAC-CTC-------------------------TTCGGTTCGTAGAATTGAACTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TATGGTTACTCATTTTGTGTTAGA.................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................TTGCGTAGGGTGTGGT---------GCAAAC----A---------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TG........................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................GAATTGAACTTTGCGTAGGGTGTGGT---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................TATCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TG....................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................TAGGGTGTGGT---------GCAAAC----A---------AATC-------------------------------------CAA.............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................TCGTAGAATTGAACTTTGCGTAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................TTTGCGTAGGGTGTGGT---------GCAAAC----A---------AATC-------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------TGA.......................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGC---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................TTGAACTTTGCGTAGGGTGTGGT---------GCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................TTCGTAGAATTGAACTTTGCGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TTTGTGTTAGAAAAAATATCCGTAATA.................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................CAAAC----A---------AATC-------------------------------------CAATTCGCCTTTCATA................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................AAC----A---------AATC-------------------------------------CAATTCGCCTTTCATACATTC...........................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................GTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTT.....................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................GAACTTTGCGTAGGGTGTGGT---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................AAC----A---------AATC-------------------------------------CAATTCGCCTTTCATAC...............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGAT----------TCGTTGAAAAGT--...........................................................	21	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................TATCCGTAATAT-------------------------------TT--------------AATTTC--------------------------------------------CT---------------------------------------TGA---------T.........................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................ACTTTGCGTAGGGTGTGGT---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..............................................ATTGAACTTTGCGTAGGGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................T---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTC...................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................TGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................AACTTTGCGTAGGGTGTGGT---------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................ATTCGCCTTTCATACATTCTATATGGC...................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................TATGGTTACTCATTTTGTGTTAGAAA...............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCATACATTCTATATGGTTACTCATTTTG........................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................C----A---------AATC-------------------------------------CAATTCGCCTTTCATA................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................ACATTCTATATGGTTACTCATTTTGTGT.....................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..........................................TAGAATTGAACTTTGCGTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................GAATTGAACTTTGCGTAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGT---------GCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
......................................TTCGTAGAATTGAACTTTGCGTAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AGAAAAAATATCCGTAATAT-------------------------------TT--------------AATT.............................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CTATATGGTTACTCATTTTGTGTTAGA.................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................GTGGT---------GCAAAC----A---------AATC-------------------------------------CAATTCGCCTTTT...................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGT---------GCAAAC----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................AATTGAACTTTGCGTAGGGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.................................................GAACTTTGCGTAGGGTGTGGT---------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................CGGTTCGTAGAATTGAACTTTGCGTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
............................................GAATTGAACTTTGCGTAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
................................................TGAACTTTGCGTAGGGTGTGGT---------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................TCGGTTCGTAGAATTGAACTTTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................ATTGAACTTTGCGTAGGGTGTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..............................................ATTGAACTTTGCGTAGGGTGTGGT---------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................GAATTGAACTTTGCGTAGGGTGTGGT---------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

TAAA-GGTTATT---------A-----------------------------------------------------------------------------AATGTGACCCATTTAA--ATG------AGTGTCATTAA-------------------------------------------------------------------CTG---TATTTTCTCCATTTA-----CAAAC-----------------------------------------ATGGCT-----------CCATCTTGGAT---------------------------TACATC----TACA---------TTTTTATCATACCCGTTACT-----------------CGTA---------------------------------------GAGT--AAAAGGGTATACTAGAT----------TCGTTGAAAAGT--ATGTAACAGATA---GAAGGAAGCGTTTACGATCCTATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAAA-GCAAAGT---------TCTA---------------------------------------------------------AAT----ATTTCCAAAGAATTTTTACCTATCAA-----------AA---TATTAAATTTAA-------------------------------------------------------------------------------------------------------------AATACATTCATTTTAATTTA-C--ATTTTA---------CTTCTATTG--A----------ATTATAGCTATT-----GTT----A---GTTA---------GCCTAGTTATACC-GTTACT-----------------CGT-------------------------------------------------AGAGTATACAAGAT----------TTGACGGAAAGT--ATTTAACAGGTA---AAAGGAAGCCTTTCCGACCCCATTAAGTATATATATTCTTAATC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTGA-TGGATCA-------------------------GTAATCAGTAATGA------------------------------------------------AGTTTGTTCTGCT-GA------ACGCAGC---CATTGGCTACCTTTTACTTTA------------------------------------------------------------------------------CCCAC-----------------------------------------ACTCAA-----------AAAAACTTGTT----------------TTTTTATGATG----TC----CGTA---------TCTTAATTATACCCTTTAAT-----------------CGTA---------------------------------------G-------------------AAT----------TCGTCGAAAATT--ATGAAACAGGTA---GAGGAAAGCGTTTCCCACCCTAATAAGTA--TATATTCTTTATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAAT-TTCAACA---------ATA----------------------------------------------------------------------------------------------------------------ATATCAATTTTTATT---------------------------------------------------------------------------------TGT-----------------------------------------GTGTTTTTAATTTGGCTTAAACAG---------------------------------TATT-----------TATAAC---------TAT----------ATTTAGTTGGATATTTGTA---------------------------------------TAGCATTT------AAAGCAAAA----------TTG-CAGAAGAT--GTT--ATAATTAAGTGAAGGAGCCATTTCCGACCCTA-------TATATGTTCTGGATC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAT-GGTAATTTAA------ATCCCAGAACATACT-------GTATGAGAACTT--CGAGGGGTGATAAAAAAGTGAAATAACT----AG---CC-------T-------TC-------------AAT----------------------------------------------------GGCAGGAAAAATATA--------ACGAAGTTT---TA----------------TTTGAGCTGAAATCATTAATTTT----GTTAC----------AAT-----------------------------------------------------CCATC----TACT---------GGTTAATTATACCCGTTACT-----------------CGTA---------------------------------------GAGT--AAAAGGGTATATTGTAT----------TCGTGCAAAAGT--ATGTAACAGCTA---GAAGGAAGCGTTTCCGACCCTAAAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAC-GACAACT---------ACCGCAAGACCTTCCGATCCGTCGACGAGAACT---CGAAGGGTGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTA-GTCT-----------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------GTGTCAATTTATCATTTTGCT-----------TTAATTGTGTT--------------------------GTT----A---AGGA---------TGTTTTTTATACCCTT-----------------------------------------------------------------------GCAGGGTATTATAATT----------TCAGTCAGAAGT--TTGCAACGCAGT---GAAGGAGACCTTTCCGACCCTATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTCG-AAGGGTATAA-----------------------------------------------------AT---------ATAAAC----A---------AATTGTTAC---TTGA--------ATATT-------------------------------------------TGTTTTTTTT-TAT-------------------------------------GTATAGTAGAAAT-----------------------------------------ATAAAA-----------AAAATTTTTACGATTAATAAATTG---------------------------------TTAC---------CAC----------TTTTA--TAACT---CTTTGAACTCAGAAGTGACAAACATGTGCTCGCCACTGTA-TGTCAC--TGAAAGACATACA------------------------------GCTCCGCAGT---GAAGGAGACACCTCCGACCCTATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCTATAAAGTATATATATTC......	26	20	0.10	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGT---GAAGGAGACACCTCCGACCC........................	25	20	0.10	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGT---GAAGGAGACACCTC..............................	20	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGT---GAAGGAGACACCTCCGA...........................	22	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGT---GAAGGAGACACCTCT.............................	21	20	0.05	1	0	0	0	0	0	1

droBip1

AAAA-CCGATGG-------TTT-G-------------------------------------------CCA---------TTAATT----TT---CAGCTAATCTCAATCAGTCAA--ACGGCCAT-GGT----------------------------------------------------CCCTGGGAAAATTCA--------CTCGAGTTT---TT-----------------------------------------------------------------------------------------------------CCGACCA---------------TTTT---------TGTTTTTTATACCCTT----------------------GC-----------------------------------------------AGAGGGTATTATAATT----------TTGTCCAAAAGT--GTGCAACGCAGT---GAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATCA-AT------------------------------------GGTCTAAAATT---AGATGGGCAGAGC---------TA---TAAGTCT---TAGTTACTCAACATTATTCAA--------CGGAA---TATCAAAATTGAGTAATAGGA------------------------------------------------------------------------------ACGAT-----------------------------------------TTTTCT-----------CTTACG-TCTT--------------------------AT---------TAAG---------TTTTTTTTATAACCGATACT-----------------CAAA------------------------------------AT-GAGT--ATTGGGGTATATTAGATTTGTGGTAAA---AGTGGATGT--GTGTAACGTCCA---GAAGGAATCGTTTGCGACCCTATAAAGTATATATATTTTTGATC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTGTAACGTCCA---GAAGG.......................................	20	20	3.60	72	0	72	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAA---AGTGGATG..............................................................	19	20	1.35	27	0	0	0	0	0	0	0	0	27	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTGCGACCC........................	20	3	0.67	2	0	1	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA---AGTGGATGT--GTGTAAC....................................................	20	20	0.55	11	0	7	0	0	0	0	0	4	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGT--GTGTAACGTCCA---GAAGGA......................................	23	20	0.55	11	0	11	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGT--GTGTAACGTC.................................................	19	20	0.55	11	0	11	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT--GTGTAACGTCCA---GAAGGAATCGT.................................	27	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTAAA---AGTGGA................................................................	20	20	0.30	6	0	4	0	0	0	0	0	0	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTAAA---AGTGGATGT--GTGTAACG...................................................	25	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGTAACGTCCA---GAAGGAA.....................................	20	20	0.20	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAA---AGTGGA................................................................	21	20	0.15	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTAAA---AGTGGA................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAA---AGTGGATGT--GTGTA......................................................	21	20	0.15	3	0	0	0	0	3	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGTATATTAGATTTGTGGT............................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTAGATTTGTGGTAAA---......................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAA---AGTGGA................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAA---AGTGGATGT--GTGTAACGT..................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAAA------------------------------------AT-GAGT--ATTGGGGTATATTAGATT..................................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAA---AGTGGAT...............................................................	20	20	0.10	2	0	1	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAA---AGTGGATGT--G..........................................................	19	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------AT-GAGT--ATTGGGGTATA.........................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGGGTATATTAGATTTGTGG.............................................................................	23	20	0.10	2	0	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAA---AGTGGATG..............................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAA---AGTGGA................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAA---AGTGGATGT--GTGTA......................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAA---AGTGGATGT--GTGTAAC....................................................	27	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGTCCA---GAAGGAATC...................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAA---AGTGGATGT--GTGG.......................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCA---GAAGGAATCGTT................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AGTGGATGT--GTGTAACGTC.................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAA---AGTGGATGT--GTGT.......................................................	24	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAA---AGTGGATGT--GTGTAACGTC.................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--GTGTAACGTCCA---GAAGGA......................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTATATTAGATTTGTGGTAAA---A.....................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAA---AGTGGATGT--GTGTAA.....................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

AAAC-AATAAAT---------ACCGCAAGACCTTCGAGCCAACAGATGAAAACT---CAAGGGGTAAGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATACCGATCG----------------------AT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

TGAATAATAGTT---------T-------------ACATATATCGACAACAATT---CAGTGGGTTAAT-----------------------------------------------------------------------CCATTCAC-----------------------------------------------------------------------------------AAAC------------------------------------------------------------AAATTTAC----------------CCTATCGTAATATT----TATAAGCA---------CATTTGTTATACCCTT----------------------GC-----------------------------------------------AGAGGGTATTTTAAAA----------TTGGTCAGATGT--TTGTAACGCACA---GAAGGAGACGTTTCCGACCCCATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................T----------------------GC-----------------------------------------------AGAGGGTATTTTAAAA----------TTGGT....................................................................	24	8	0.13	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATTTTAAAA----------TTGGTC...................................................................	19	9	0.11	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAAAA----------TTGGTCAGATGT--T..........................................................	21	12	0.08	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAA----------TTGGTCAGATGT--TTG........................................................	21	14	0.07	1	0	1	0	0	0

droVir3

TACT-GCAAAAT---------A-------------------ATTGGCGACGATT---CGAGGAGCGTGTT---------TGGAGT----TT--------------------------------------------------------------------------------TGCCATGTTT-TAACCAAACGGGC-GGTGGTAACAG---CAT---AC----GCATAGCAGTCAC-----------------------------------------TTAAGC-----------CAGATTTCAC--------------------------------TC----TGTA---------TGTTTTTTATACCCTGAAC--------------------------------------------------------------------------TATATTGTATTTGTGCGAAA---TCCAAATGT--ATGTAACAGGCA---GAAGGAAGCATCTCCGACCCCATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................TGTT---------TGGAGT----TT--------------------------------------------------------------------------------TGCCATGTTT-TAA...................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................TGTT---------TGGAGT----TT--------------------------------------------------------------------------------TGCCATGTTT-TAACC.................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................GT----TT--------------------------------------------------------------------------------TGCCATGTTT-TAACCAAACGGGC-GG......................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TAGCAGTCAC-----------------------------------------TTAAGC-----------CAGATTTCA..............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--ATGTAACAGGCA---GAAGGAAG....................................	22	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ATGTAACAGGCA---GAAGGAAGCATCT...............................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCA---GAAGGAAGCATCTCCGACCCCAT.....................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCA---GAAGGAAGCATCTCC.............................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGGCGACGATT---CGAGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGGCGACGATT---CGAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TGGCGACGATT---CGAGGAGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCGACCCCATAAAGTAT..............	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAAA---TCCAAATGT--ATGTAACAGGC................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAAA---TCCAAATGT--ATGTAACAGG.................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGAAA---TCCAAATGT--ATGTAAC....................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---TCCAAATGT--ATGTAACAGGCA---G...........................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--ATGTAACAGGCA---GAAGGAA.....................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGT--ATGTAACAG..................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACA-AATAATACTAACAGTTT-C-------------AT------------------------------------------------------------------AATCATTCAT--------AAGGC---TA--------------------------------------TGCCTATTAT-TTAGCAAGAAAGT-TATGATCA-------------------------------CA--------------AATTTC--------------------------------------------ATCGATTTCCACTTTA------------------------TATC---------CACTTTTTATACCCTGAACCCATTTTAAATGAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------TTGTTGAAATGT--ATGTAACAGGCA---GAAGGAGGCGTGGCAGACCCCACAAAGTATACATATTCTTGATC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------T........................................................................	24	20	0.15	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------TTG......................................................................	26	20	0.10	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------TTG......................................................................	25	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------TTT......................................................................	26	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------TT.......................................................................	25	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT--ATGTAACAGGCA---GAAGGA......................................	22	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------------------------TCAGGGTATAATGGTT----------.........................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCCACAAAGTATACATATTCTT....	24	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGAAA---------------------------------------------------TCAGGGTATAATGGTT----------.........................................................................	23	20	0.05	1	0	0	0	0	0	1

droGri2

ATTA-ACAAAAT-------T-ATGACAATTATTCTTGGCCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----CAATGACATTTTGTTAT---------GA-----------TTTTAACTGGGTAA---------------------------------------------------AAAGTGTAT------------------------AATGT--ATGTAACAGGCA---GAAAAAAGCACCTCGGAACCCATAAAGTATATATATTCTTGATC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_16852

3r:542702-542851 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.4	-19.3	-19.3