dsi_16823

CDS [x_17103460_17103560_-]; exon [x_17103460_17103560_-]; intron [x_17100920_17103459_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTACTGCAACAATTTCAATTTAAATTTTCCAATCGTTCTAAATCAATCAATAAATGTCAAAACTCTGAATACAAAAGAACAACCAATCAAAAAAACCAAAAATATTAATAAGACCAACTCACCCAAGACAGAATGCAACAAAATTGTATCAAAACTAAAATCTTATTTGATTATCTAAAGTATTCATTTGAGTTCTAGTA ************************************************..................................................................((.((((.......................................................................))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	M053 female body	SRR902009 testis
..............GATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................	22	0	1	2.00	2	2	0	0	0
............................AGTCAGGAAAAAAGA...............................................................................................................................................................................................................	15	0	1	1.00	1	0	1	0	0
......................................................................................................................ATACAAAAGAACAACCAATC................................................................................................................	20	0	1	1.00	1	1	0	0	0
...............................................GAGGTACTGCAACAATTTCAATT....................................................................................................................................................................................	23	0	1	1.00	1	1	0	0	0
..................................................................................................................CTGAATACAAAAGAA.........................................................................................................................	15	0	9	0.11	1	0	1	0	0
...............................................................................................................................AACCACCAATCCAAAAACCC.......................................................................................................	20	3	20	0.05	1	0	0	1	0
....TCAGAAGTGGGATCTGGAAA..................................................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	1

TTCCGGTCTTTACCCTAGACCTTATGCTTCAGTCCTTTTTTCTGACCCTCCATGACGTTGTTAAAGTTAAATTTAAAAGGTTAGCAAGATTTAGTTAGTTATTTACAGTTTTGAGACTTATGTTTTCTTGTTGGTTAGTTTTTTTGGTTTTTATAATTATTCTGGTTGAGTGGGTTCTGTCTTACGTTGTTTTAACATAGTTTTGATTTTAGAATAAACTAATAGATTTCATAAGTAAACTCAAGATCAT ************************************************..................................................................((.((((.......................................................................))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	M023 head	M024 male body	SRR553485 Chicharo_3 day-old ovaries
...............................................CTCCATGACGTTGTTAAAGTTAAATTT................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................GTTCTTCTAACATAGTTTTG.............................................	20	2	2	0.50	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................TAAGTAAACTCAAAATCA.	18	1	3	0.33	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................AAGTAAACTCAAAATCA.	17	1	10	0.20	2	1	1	0	0	0	0
..............................................AGTCCATGACGTCGTTAAAGT.......................................................................................................................................................................................	21	3	8	0.13	1	0	0	0	1	0	0
.......................................................CGTTGTTAAAGTTAAAGGCAAA.............................................................................................................................................................................	22	3	20	0.10	2	0	0	0	0	2	0
...................................................................................................................................................................GGCTGAGTGGGTCCCGTCT....................................................................	19	3	12	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TAAGGAAACTCAAAATCA.	18	2	16	0.06	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................AGTAAACTCAAAATCA.	16	1	19	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:17103260-17103509 -	dsi_16823	AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTAA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAA---------CCAAA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droSec2	scaffold_8:309484-309735 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAAA-------ACCAAA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
dm3	chrX:18003295-18003552 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAAA-AAAAAAACCAAA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droEre2	scaffold_4690:8331470-8331726 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTC--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAACAAA-AAAAATA--------TAT-----------------ATATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droYak3	X:16627593-16627840 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAAT-----------AA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droEug1	scf7180000408176:680251-680522 +		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAAAAATTT--CAATTTCAAGT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA------ACCAAA------AAAAAAAATAATAATAATTATAATTATAAAACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAATTTGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droBia1	scf7180000301760:601879-602129 +		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAAAT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA--------------ATATA------------------GTAATAATAAAACCAACTCACCCC-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTCTCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droTak1	scf7180000415843:475002-475263 +		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTCAATTTAAA-----------ATTTCAAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAC-A--------AAAAATAT-----------------ATATATTAATAAAACCAACTCACCC--AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTCTCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droEle1	scf7180000491193:208691-208934 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTAAAATT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA---------------------------------------AATAATAAAACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATTTGAAT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droRho1	scf7180000779986:514551-514797 +		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA------------------A------------------ATAATAATAAAACCAACTCACCTA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droFic1	scf7180000453872:354226-354467 +		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAAATATTT--CAATTAAAA-T-----------------TTCAAATCGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA----------------------------------------ATAATAAAACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droKik1	scf7180000302696:1704607-1704852 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTCAATTTAAAA-C-GT-TCAA--TTC---TCGTTCTCA-----------ATCAATCA----ATTTCA-A--------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAACCAACAA---------------------------------------------------AACTCACCCAAAGACAGAATGCAACATGCAACAAAATTGTAT----------------------CAAAACTAAAAATTGAAT-CGATTTTCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droAna3	scaffold_13335:1622359-1622663 +	dan_2260	AGGACCAGAAATATGATCTTGAGTATGTTGTTAAACGCAAGGATGTTGAGGTACACGAACACTCTACTATAATAC--CAAATATAATG-----------------CCTAT----ATCTAA------ATCA-ATC-CTCGATCAAAATCA----------------------------------AAAGTTAACGCTTAACAAGGGGGGGGTTTTGGCGCGGGGGGGAAGAAA-A-----------AAAA-AA-----AAAAA---AAT-----------------ATATATT-----CAACAACTCACCTA-AGATAGAATGCAACATGCAACTAAATTTAATTCAATTCAATCAAAAACAAAAAAAAAACTAAAATCTAAATCTGA--ATCTGAAGTA----------------TTCAT----TTGAGTTC----TAGTA--
droBip1	scf7180000395454:42309-42590 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAAT------------------TTCAAATCGTTCTCAATATATATCAAATT-ATCAATCAATGTCAAA--------------------------------AAAC-----TCTGAATACA----------------------AAAGAACAAAGCAATCAAAAAAAA-TCAAATATCAA----------------------------ATT-----CAACAACTCACCTA-AGATAGAATGCAACATGCAACTAAATTTAATTCAATTCTAAAAAAATTAAA---AAAAATATAATCTGA--------ATCTGAAGTA----------------TTCAT----TTGAGTTC----TAGTATA
dp5	XL_group3a:1998373-1998636 +		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCACCAATTT--CAATTTCAATT----A-CAGTTTCAATTTTCAATTTGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAACCAACCAACCAACAAACA-AACA-----------------------------------ATT--------C-AATCACTCC-AGACAGAATGCAACATGCAACAAAAATCAATTAAAT-----------------CAAATC-AAAATCAATAT-CAATTACCTAATCTA----------------ATC------TTGAGTTCTATCTAGTA--
droWil2	scf2_1100000004909:12009317-12009440 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCCAAAAATTT-TAATATCA---------------------------------CA-----------AACAAAA--------CCA-------------------AAAAAAAAAAAATAAAAAC-----TCTGAATACA----------------------AAAGAAC-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12928:1289591-1289795 +		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTTT-CAAT--CAATT-----------------TTCAA-------------------------------AAATATCAAAATACTCTAAATACAATT--------------------------------------------------------GAAAAAA-AAGCAACAAAAAAAAA-AAAAATACCAA----------------------------AT-------A----------CC-AGAC-------ATC-------AAATTTGTTT----------------------------------------------------AGTATCATGTTTTTTACGTTTCCGTTTTTTTTCTTTC----TTGCA--
droMoj3	scaffold_6473:13703571-13703749 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAAATATTCAATT-CAATAAAAAAAA-AA-AAAA--TAC---AAATACAAA-----------ACAAATCA--AAATTTCA-A--------------------------------A------------AATACA----------------------AAATA---------------------------CCAAA------A------------------AAAT-------A----------CC-AGACATA--------------CAATTTGTTT----------------------------------------------------AGTA-----------------TCAT----ATGTTTTT----T---A--
droGri2	scaffold_15203:8426768-8426929 -		AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTTT-TAAT--CAATTAAAAAAA-AA-AAAA---AC---AAATATAA-------------------------AAACC----------------------------------AAAC-----TCTTAATACA----------------------AAAGAAA-AAAAAA---------------------------------------------------ATACAAAAA----------CC-AGACATA--------------CAATT------------------------------------------------------------------------------------------TTTT----TAGTA--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTAA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAA---------CCAAA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............GATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AGTCAGGAAAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................ATACA----------------------AAAGAAC-AACCAATC..........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GAGGTAC----------TGCAACAATTT--CAATT........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTGAATACA----------------------AAAGAA....................................................................................................................................................................................................................	15	9	0.11	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAAA-------ACCAAA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........ATGGGATCTGGAATACGAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

dm3

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAAA-AAAAAAACCAAA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..GGCCAGAAATGGGATCTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAAATGGGATCTGGAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGGGATCTGGAATACGAAGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........AATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GGCCAGAAATGGGATCTGGAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGGGATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......GAAATGGGATCTGGAATATC...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GGAAAAAAGACTGGGATC.......................................................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AAAAAAA-AAAAAAACCAAA------A------------------A...........................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTC--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAACAAA-AAAAATA--------TAT-----------------ATATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........TGGGATCTGGAATACGAAGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	1	0
.......................TACGAAGTCAGGAAAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..........ATGGGATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................ATATTAATAAGACCAACTCACCC.....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................ACCCA-AGACAGAATGCAAC-------..............................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
.......GAAATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.................CTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
................TCTGGAATACGAAGTCAGGAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........TGGGATCTGGAATACGAAGTCAGGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........TGGGATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
..................TGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
......AGAAATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

droYak3

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCCAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAATCAAAAAAAT-----------AA------A------------------ATATTAATAAGACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTTATT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......GAAATGGGATCTGGAATACG...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................GTCAGGAAAAAAGACTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......GAAATGGGATCTGGAATACGAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........ATGGGATCTGGAATACGAAGTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........AATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........TGGGATCTGGAATACGAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......GAAATGGGATCTGGAATACGAAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........ATGGGATCTGGAATACGAAGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GGCCAGAAATGGGATCTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........ATGGGATCTGGAATACGAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........TGGGATCTGGAATACGAAGTCAGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................TACGAAGTCAGGAAAAAAGACT.............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................TACGAAGTCAGGAAAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GGAATACGAAGTCAGGAAAAAAGACT.............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAAAAATTT--CAATTTCAAGT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA------ACCAAA------AAAAAAAATAATAATAATTATAATTATAAAACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAATTTGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAAAT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA--------------ATATA------------------GTAATAATAAAACCAACTCACCCC-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTCTCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTCAATTTAAA-----------ATTTCAAATCGTTCTCA-----------ATCAATCAATAAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAC-A--------AAAAATAT-----------------ATATATTAATAAAACCAACTCACCC--AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTCTCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTAAAATT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA---------------------------------------AATAATAAAACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATTTGAAT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAATT-----------------TTCAAATCGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA------------------A------------------ATAATAATAAAACCAACTCACCTA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAAATATTT--CAATTAAAA-T-----------------TTCAAATCGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAAACAAAAA----------------------------------------ATAATAAAACCAACTCACCCA-AGACAGAATGCAAC-------AAAATTGTAT----------------------CAAAACTAAAATCTGAAT-TGATTATCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTCAATTTAAAA-C-GT-TCAA--TTC---TCGTTCTCA-----------ATCAATCA----ATTTCA-A--------------------------------AAAC-----TCTGAATACA----------------------AAAGAAC-AACCAACCAACCAACAA---------------------------------------------------AACTCACCCAAAGACAGAATGCAACATGCAACAAAATTGTAT----------------------CAAAACTAAAAATTGAAT-CGATTTTCTAAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGGACCAGAAATATGATCTTGAGTATGTTGTTAAACGCAAGGATGTTGAGGTACACGAACACTCTACTATAATAC--CAAATATAATG-----------------CCTAT----ATCTAA------ATCA-ATC-CTCGATCAAAATCA----------------------------------AAAGTTAACGCTTAACAAGGGGGGGGTTTTGGCGCGGGGGGGAAGAAA-A-----------AAAA-AA-----AAAAA---AAT-----------------ATATATT-----CAACAACTCACCTA-AGATAGAATGCAACATGCAACTAAATTTAATTCAATTCAATCAAAAACAAAAAAAAAACTAAAATCTAAATCTGA--ATCTGAAGTA----------------TTCAT----TTGAGTTC----TAGTA--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................GTTAAACGCAAGGATGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	10.00	10	1	4	4	0	1	0
..........................GTTGTTAAACGCAAGGATGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	2	0	2	0
......................GTATGTTGTTAAACGCAAGGATGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	0	0	1	0
...............................TAAACGCAAGGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
............................TGTTAAACGCAAGGATGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.....CAGAAATATGATCTTGAGTATGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
.....CAGAAATATGATCTTGAGTATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................GTATGTTGTTAAACGCAAGGATGC............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................ATGTTGTTAAACGCAAGGATGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..GACCAGAAATATGATCTTGAGTATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..........................GTTGTTAAACGCAAGGATGTT...........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................AGTATGTTGTTAAACGCAAGGATGTT...........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..............GATCTTGAGTATGTTGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.............................GTTAAACGCAAGGATGTTGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........AATATGATCTTGAGTATGTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.GGACCAGAAATATGATCTTGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................AGTATGTTGTTAAACGCAAGGATGTTGA.........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.....CAGAAATATGATCTTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................................AAACGCAAGGATGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.......GAAATATGATCTTGAGTATGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
..........ATATGATCTTGAGTATGTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................AGAAA-A-----------AAAA-AA-----AAAAA---AA................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
................................................................................................................................................................................................................................GAAGAAA-A-----------AAAA-AA-----AAAA......................................................................................................................................................................................	18	20	0.10	2	0	1	1	0	0	0
...............................................................................................................................................................................................................................GGAAGAAA-A-----------AAAA-AA-----AAAAA---A.................................................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AAAACAAAAAAAAAACTA......................................................................	18	20	0.05	1	0	1	0	0	0	0

droBip1

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTT--CAATTTAAAT------------------TTCAAATCGTTCTCAATATATATCAAATT-ATCAATCAATGTCAAA--------------------------------AAAC-----TCTGAATACA----------------------AAAGAACAAAGCAATCAAAAAAAA-TCAAATATCAA----------------------------ATT-----CAACAACTCACCTA-AGATAGAATGCAACATGCAACTAAATTTAATTCAATTCTAAAAAAATTAAA---AAAAATATAATCTGA--------ATCTGAAGTA----------------TTCAT----TTGAGTTC----TAGTATA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCACCAATTT--CAATTTCAATT----A-CAGTTTCAATTTTCAATTTGTTCTCA-----------ATCAATCAATCAATGTCA----------------------------------AAAC-----TCTGAATACA----------------------AAAGAACCAACCAACCAACAAACA-AACA-----------------------------------ATT--------C-AATCACTCC-AGACAGAATGCAACATGCAACAAAAATCAATTAAAT-----------------CAAATC-AAAATCAATAT-CAATTACCTAATCTA----------------ATC------TTGAGTTCTATCTAGTA--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............GGGATCTGGAATACGAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........AAATGGGATCTGGAATACGAAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............GGATCTGGAATACGAAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........ATGGGATCTGGAATACGAAGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CAGAAATGGGATCTGGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........TGGGATCTGGAATACGAAGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........AATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............GGATCTGGAATACGAAGTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........AATGGGATCTGGAATACG...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........TGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................TACGAAGTCAGGAAAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................AAAGACTGGGAGGTAC----------TGCACC....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......AGAAATGGGATCTGGAATAC................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................AGACTGGGAGGTAC----------TGCAC.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......AGAAATGGGATCTGGAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
AAGGCCAGAAATGGGATC........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...........TGGGATCTGGAATACGAAGTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................CTGGAATACGAAGTCAGGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GGGATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........ATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........TGGGATCTGGAATACGAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........ATGGGATCTGGAATACGAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droWil2

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCCAAAAATTT-TAATATCA---------------------------------CA-----------AACAAAA--------CCA-------------------AAAAAAAAAAAATAAAAAC-----TCTGAATACA----------------------AAAGAAC-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................TACGAAGTCAGGAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	5	0	0	0	0
.......................TACGAAGTCAGGAAAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0
............GGGATCTGGAATACGAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0
............GGGATCTGGAATACGAAGTCAGGAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0
...........TGGGATCTGGAATACGAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.........AATGGGATCTGGAATACGAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.........AATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................AATACGAAGTCAGGAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
...........TGGGATCTGGAATACGAAGTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...........TGGGATCTGGAATACGAAGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
......AGAAATGGGATCTGGAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
.......GAAATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0

droVir3

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTTT-CAAT--CAATT-----------------TTCAA-------------------------------AAATATCAAAATACTCTAAATACAATT--------------------------------------------------------GAAAAAA-AAGCAACAAAAAAAAA-AAAAATACCAA----------------------------AT-------A----------CC-AGAC-------ATC-------AAATTTGTTT----------------------------------------------------AGTATCATGTTTTTTACGTTTCCGTTTTTTTTCTTTC----TTGCA--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........AATGGGATCTGGAATACGAAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........AATGGGATCTGGAATACGAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATGGGATCTGGAATACGAAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TACGAAGTCAGGAAAAAAGACTG............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATACGAAGTCAGGAAAAAAGACTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAGGAAAAAAGACTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATCTGGAATACGAAGTCAGGAAAAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TACGAAGTCAGGAAAAAAGACTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAGGAAAAAAGACTGGGAGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TCAGGAAAAAAGACTGGGA.........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATCTGGAATACGAAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCCAGAAATGGGATCTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAGGCCAGAAATGGGATCTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGGGATCTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGATCTGGAATACGAAGTCAGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........TGGGATCTGGAATACGAAGTCAGGAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CCAGAAATGGGATCTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGGCCAGAAATGGGATCTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GGAATACGAAGTCAGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GAAATGGGATCTGGAATACGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGGAATACGAAGTCAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CTGGAATACGAAGTCAGGAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGAAATGGGATCTGGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GAAGTCAGGAAAAAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAGGAAAAAAGACTGGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAAATATTCAATT-CAATAAAAAAAA-AA-AAAA--TAC---AAATACAAA-----------ACAAATCA--AAATTTCA-A--------------------------------A------------AATACA----------------------AAATA---------------------------CCAAA------A------------------AAAT-------A----------CC-AGACATA--------------CAATTTGTTT----------------------------------------------------AGTA-----------------TCAT----ATGTTTTT----T---A--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................CAAATATTCAATT-CAATAAAAA..............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............................AGTCAGGAAAAAAGACTGGGAGA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................AAGACTGGGAGGTAC----------TGCAAC....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................AGACATA--------------CAATTTGTTT----------------------------------------------------AGTA-----------------TCAT----...................	25	1	1.00	1	0	0	0	0	1	0

droGri2

AAGGCCAGAAATGGGATCTGGAATACGAAGTCAGGAAAAAAGACTGGGAGGTAC----------TGCAACAATTTT-TAAT--CAATTAAAAAAA-AA-AAAA---AC---AAATATAA-------------------------AAACC----------------------------------AAAC-----TCTTAATACA----------------------AAAGAAA-AAAAAA---------------------------------------------------ATACAAAAA----------CC-AGACATA--------------CAATT------------------------------------------------------------------------------------------TTTT----TAGTA--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........AATGGGATCTGGAATACG...............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0

-4.9	-4.1	-4.1	-4.1

dsi_16823

x:17103310-17103459 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads