ID:

dsi_16810

 Coordinate:

3r:22299867-22299928 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3r_22299969_22299993_-]; CDS [3r_22299929_22299968_-]; exon [3r_22299929_22299993_-]; CDS [3r_22298881_22299866_-]; exon [3r_22298858_22299866_-]; intron [3r_22299867_22299928_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------##################################################
CTACTGCGTTATGAAGACATTCCTGATTTTGGCATTCTTTGCACTGGCCGGTAAGAATATAAGAGTTTCTGTTTCTAAAGAATCCTATCTAATATGTTAAACATCCTTTCAGCTTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGC
**************************************************.....(((((((((..((((........)))).....)))..))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M025
embryo
 GSM343915
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..............................................................................................................CGCTTCGGCTATTCCGATCAAGGA............................ 24 1 1 22.00 22 22 0 0 0 0 0 0
..............................................................................................................CGCTTCGGCTATTCCGATCAAGG............................. 23 1 1 12.00 12 11 1 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGGGGA....... 21 0 1 9.00 9 0 5 3 1 0 0 0
....................................................................................................................GGCTATTCCGATCAAGGA............................ 18 0 1 7.00 7 1 5 1 0 0 0 0
................................................................................................................................CAAGGAATCTGAGCGCGTCC.............. 20 0 1 6.00 6 2 4 0 0 0 0 0
..............AGACATTCCTGATTTTGGC................................................................................................................................. 19 0 1 6.00 6 3 2 1 0 0 0 0
.....................................................................................................................................AATCTGAGCGCGTCCATGGGGA....... 22 0 1 6.00 6 1 5 0 0 0 0 0
........................GATTTTGGCATTCTTTGCACT..................................................................................................................... 21 0 1 6.00 6 4 1 1 0 0 0 0
....................................................................................................................GGCTATTCCGATCAAGGAATCTGAGC.................... 26 0 1 6.00 6 0 4 2 0 0 0 0
...........................................................................................................GGCCGCTTCGGCTATTCCGATCAAGGA............................ 27 3 1 5.00 5 5 0 0 0 0 0 0
.......GTTATGAAGACATTCCTGATTTTGGC................................................................................................................................. 26 0 1 4.00 4 3 1 0 0 0 0 0
.........TATGAAGACATTCCTGATTTTGGC................................................................................................................................. 24 0 1 3.00 3 1 2 0 0 0 0 0
.......................................................................................................................TATTCCGATCAAGGAATCTGAGCGC.................. 25 0 1 3.00 3 0 3 0 0 0 0 0
..............................................................................................................................ATCAAGGAATCTGAGCGC.................. 18 0 1 3.00 3 0 3 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGGGGAG...... 22 0 1 3.00 3 2 0 0 1 0 0 0
.............................................................................................................................GATCAAGGAATCTGAGCGC.................. 19 0 1 3.00 3 1 2 0 0 0 0 0
................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGGA....... 27 0 1 3.00 3 0 2 1 0 0 0 0
........................GATTTTGGCATTCTTTGCACTGGC.................................................................................................................. 24 0 1 3.00 3 3 0 0 0 0 0 0
...........................TTTGGCATTCTTTGCACTGGC.................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGGGGAGA..... 23 0 1 3.00 3 1 2 0 0 0 0 0
...............................................................................................................GCTTCGGCTATTCCGATCAAGG............................. 22 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................GGCCGCTTCGGCTATTCCGATCAAGG............................. 26 3 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................CTTCGGCTATTCCGATCAAGGAATCTGA...................... 28 0 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGGG......... 19 0 1 2.00 2 0 1 0 1 0 0 0
.................................................................................................................................AAGGAATCTGAGCGCGTCCATGGGGA....... 26 0 1 2.00 2 0 2 0 0 0 0 0
....................................................................................................................................GAATCTGAGCGCGTCCATGGG......... 21 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................CGGCTATTCCGATCAAGG............................. 18 0 1 2.00 2 1 1 0 0 0 0 0
.............................................................................................................................GATCAAGGAATCTGAGCGCGTCCATGG.......... 27 0 1 2.00 2 2 0 0 0 0 0 0
..........ATGAAGACATTCCTGATTTTGGC................................................................................................................................. 23 0 1 2.00 2 0 2 0 0 0 0 0
...........................TTTGGCATTCTTTGCACTGGCCGCTTC............................................................................................................ 27 3 1 2.00 2 0 2 0 0 0 0 0
...............................................................................................................GCTTCGGCTATTCCGATCAAGGA............................ 23 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................ATTCCGATCAAGGAATCTGAGCGC.................. 24 0 1 1.00 1 0 1 0 0 0 0 0
.................CATTCCTGATTTTGGCATTCTTTGCACC..................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0
CTACTGCGTTATGAAGACATT............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............GACATTCGTGATTTTGGC................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................TATTCCGATCAAGGAATCTGAGCGCGTC............... 28 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................AGTAATCTGAGCGCGTCCATGGGGA....... 25 1 1 1.00 1 1 0 0 0 0 0 0
...CTGCGTTATGAAGACATTCCT.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................GGAATCTGAGCGCGTCCAT............ 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................CAAGGAATCTGAGCGAGTCC.............. 20 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................AATCTGAGCGCGTCCATGGGGAGA..... 24 0 1 1.00 1 1 0 0 0 0 0 0
........................GATTCTGGCATTCTTTGCACTGGC.................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................AATCTGAGCGCGTCCATGG.......... 19 0 1 1.00 1 1 0 0 0 0 0 0
.................................................GGTAAGAATATAAGAGTTTCTG........................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................TCTGAGCGCGTCCATGGGGG....... 20 1 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................AATCTGAGCGCGTCCATG........... 18 0 1 1.00 1 0 1 0 0 0 0 0
...........................TTTGGCATTCTTTGCACT..................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0
.........TATGAAGACATTCCTGATTTTGGCAT............................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
..........................TTTTGGCATTCTTTGCACTGGC.................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGGGGGGAA.... 24 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................CGCTTCGGCTATTTCGATCAAGGA............................ 24 2 1 1.00 1 1 0 0 0 0 0 0
..............AGACATTCCTGATTTTGGCATTCT............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................ATTTTGGCATTCTTTGCACTGGC.................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................GGCTATTCCGATCAAGGAAT.......................... 20 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................CGATTAAGGAATCTGAGCGCGTCC.............. 24 1 1 1.00 1 1 0 0 0 0 0 0
...............GACATTCCTGATTTTGGCATTCTT........................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................TGGCCGCTTCGGCTATTCCGATCAAGG............................. 27 3 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................GAATCTGAGCGCGTCCGTGG.......... 20 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................CGGCTATTCCGATCAAGGA............................ 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................AGCGCGTCCATGGGGGGAACG.. 21 1 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................TCCGATCAAGGAATCTGAGCGCGTC............... 25 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................CCGATCAAGGAATCTGAGCGCGTCC.............. 25 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGAA....... 27 1 1 1.00 1 1 0 0 0 0 0 0
....TGCGTTATGAAGACATTCCTGAT....................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................CTGGCCGCTTCGGCTATTCCGATCAA............................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAA.... 25 0 1 1.00 1 0 1 0 0 0 0 0
....................TCCTGATTTTGGCATTCTTTGC........................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................GAATCTGAGCGCGTCCATG........... 19 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................................TTCCGATCAAGGAATCTGAGCGC.................. 23 0 1 1.00 1 0 1 0 0 0 0 0
CTACTGCGTTATGAAGAC................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
...............GACATTCCTGATTTTGGC................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................GCCGCTTCGGCTATTCCGATCA................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
...........TGAAGACATTCCTGATTTTGGCAT............................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
CTACTGCGTTATGAAGACATTC............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................CTGAGCGCGTCCATGGGGA....... 19 0 1 1.00 1 0 0 0 1 0 0 0
.........TATGAAGACATTCCTGATTTTGGCATT.............................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................CGATCAAGGAATCTGAGCGCGTCC.............. 24 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAA.... 24 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGG.......... 18 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................CTTCGGCTATTCCGATCAAGG............................. 21 0 1 1.00 1 0 1 0 0 0 0 0
............GAAGACATTCCTGATTTTGGCATTC............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAAC... 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................TATTCCGATCAAGGAATCT........................ 19 0 1 1.00 1 0 0 0 0 1 0 0
...........................................................................................................................CCGATCAAGGAATCTGAGCGC.................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................GGCCGCTTCGGCTATTCCGATCAAG.............................. 25 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGGAG...... 28 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................GGCTATTCCGATCAAGGAATCTGAGCGC.................. 28 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................CGCTTCGGCTATTCCGATCAAG.............................. 22 1 1 1.00 1 0 1 0 0 0 0 0
.......................TGATTTTGGCATTCTTTGCACT..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAACG.. 26 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................GAATCTGAGCGCGTCCATGGGGAGAAC... 27 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................CAAGGAATCTGAGCGCGTCCA............. 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................CGCTTCGGCTATTCCGATCAAGGAATCTG....................... 29 1 1 1.00 1 1 0 0 0 0 0 0
............GAAGACATTCCTGATTTTGGC................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................CCGATCAAGGAATCTGAGCGCGTCCATG........... 28 0 1 1.00 1 1 0 0 0 0 0 0
CTACTGCGTTATGAAGACATTCCT.......................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
..........ATGAAGACATTCCTGATTTTGGCATTCT............................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................CTGGCCGCTTCGGCTATTCCGATCAAGG............................. 28 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................CCGATCAAGGAATCTGAGCGCGTC............... 24 0 1 1.00 1 0 1 0 0 0 0 0
............................TTGGCATTCTTTGCACTGGCCGCTT............................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
CTACTGCGTTATGAAGACATGCCT.......................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGG......... 25 0 1 1.00 1 1 0 0 0 0 0 0
CTACTGCGTTATGAAGACATTCCTG......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................GGAATCTGAGCGCGTCCATGGGGAGATC... 28 1 1 1.00 1 1 0 0 0 0 0 0
....................TCCTGATTTTGGCATTCTTTGCA....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................CGGCTATTCCGATCAAGGAATCTGAGCGC.................. 29 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................TGGCCGCTTCGGCTATTCCGATCA................................ 24 3 1 1.00 1 1 0 0 0 0 0 0
...............GACATTCCTGATTTTGGCATTC............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
.TACTGCGTTATGAAGACATTCCT.......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
..................ATTCCTGATTTTGGCATTCTTTGCACT..................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
........................GATTTTGGCATTCTTTGCACTGGCCGCTT............................................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................CTGAGCGCGTCCATGGGGAGAA.... 22 0 1 1.00 1 1 0 0 0 0 0 0
..................ATTCCTGATTTTGGCATTCTTTGCACG..................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
.............AAGACATTCCTGATTTTGGC................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...................TTCCTGATTTTGGCATTCTTT.......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............GACATTCCTGATTTTGGCAT............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................ATTCTTTGCACTGGCCGCTTC............................................................................................................ 21 3 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................CGCTTCGGATATTCCGATCAAGGA............................ 24 2 1 1.00 1 1 0 0 0 0 0 0
....TGCGTTATGAAGACATTCCT.......................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................AATGCTATCTAATATGT................................................................. 17 1 2 0.50 1 0 0 0 0 0 1 0
...........................................................................................................GGCCGCTTCGGCTATTCCGAT.................................. 21 3 3 0.33 1 1 0 0 0 0 0 0
..................................TTCTTTGCACTGGCCGCTTC............................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0
................................................................................................................CTTCGGCTCTTCCTATCA................................ 18 2 9 0.11 1 0 0 0 0 0 0 1

Anti-sense strand reads

GATGACGCAATACTTCTGTAAGGACTAAAACCGTAAGAAACGTGACCGGCCATTCTTATATTCTCAAAGACAAAGATTTCTTAGGATAGATTATACAATTTGTAGGAAAGTCGAAGCCGATAAGGCTAGTTCCTTAGACTCGCGCAGGTACCCCTCTTGCCG
**************************************************.....(((((((((..((((........)))).....)))..))))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...........................AAACCGTAAGAAACGTGACCGGCCATT............................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................GAAAGTCGAAGCTGAT......................................... 16 1 2 0.50 1 0 1 0 0 0
..............................................................................................................................GAGTTCCATAGGCTCGCGCA................ 20 3 5 0.20 1 0 0 1 0 0
.......................................................................AAAGATTTCTGAGGA............................................................................ 15 1 7 0.14 1 0 0 0 1 0
.............................................................................................TACAATTTGTAGGTTAGCCG................................................. 20 3 10 0.10 1 0 0 0 0 1
.............................................................TCTCAAAGAAAAGGATTT................................................................................... 18 2 15 0.07 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:22299817-22299978 - dsi_16810 CTACTGCGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTGCACTGGC---CGGTAAGAATATA---------------AG--------------AG-TTTCTGTTTCT--------A--AAGAA-----T-CCT--------ATCTAATA---------TGTTAAAC--ATCCTTTCAGCTTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGC
droSec2 scaffold_13:1612810-1612971 - CTACTGCGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTGCTCTGGC---CGGTAAGAATTTA---------------AG--------------AG-TTTATATTTCT--------A--AAGAA-----T-CCC--------ATCTAATA---------TGTTAAAC--ATCCTTTCAGCTTCGGCTATTCCGATCAAGAAATCTGAGCGCGTCCATGGGGAGAACGGC
dm3 chr3R:22848758-22848919 - CCGCTACGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTGCTCTGGC---CGGTAAGAATTTA---------------AG--------------AA-TTTCCATTTTT--------A--AAGAA-----T-ACT--------GTCTAACA---------TGTAACAC--ATCCTTTCAGCCTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGC
droEre2 scaffold_4820:5197144-5197309 + CTACTACGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTACCCTGGC---CGGTAAAATATA----------------AAAAACA---------AA-ATTAAATTTCT--------A--AAAAA-----T-CCT--------ATCTAAAA---------TGTAACAC--GTCCTTTCAGCTTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGC
droYak3 3R:23644593-23644755 + CTACTACGTTATGAAGA-CATTCCTGATTCTGGCATTCTTTGCTCTGGC---CGGTAAGACATA----------------AG--------------AA-CTAAAATTCCA--------A--AAGAA-----T-TCT--------ATTCAAAT-CCTATTC------CT-A-TTCCTTTCAGCTTCGGCGATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGC
droEug1 scf7180000409770:309863-310034 - CAACTACATTATGAAGA-CATTCCTAATTTTAGCACTCTTTGCTCTAGC---CGGTAGGTTTCAA--------TA------CAATCC-------------TTTGAGGATATAATTATAA--AATAA-----T-AAT--------CTTAAAAT---------T-CTCTC-T-TTTCTTTCAGCTTCGGCTTTTCCTGTGGAGGAATCTGAGCGCGTCCATGGCGAGAACGGC
droBia1 scf7180000302113:3119543-3119698 - CTACAACATTATGAAGA-CATTCCTGATTCTGGCACTCTTTGCTCTAGC---CGGTAGGTTTTA----------------ATAATCATGACTGGAGAA-C---GAATCCT--------A--AAGAA-----T-TCG-----------------------------------CTCTTTTCAGTTTCTGCCTTTCCCTTGGAGGAATCGGAGCGCATCCATGGTGAGAACGGC
droTak1 scf7180000410579:432789-432951 + TTACTACATAATGAAGA-CATTCCTGATTCTGGCACTCTTTGCTGCAGC---CGGTAAGTTCTAA--------AT------G--------------AATATGAAATTCCT--------G--AAGAA-----T-TCT--------CTTTTAAC---------TATG-AAC--TCCCTTTCAGTTTCGGCTTTTCCCCTGGAGGAATCTGAGCGCGTCCATGGCGAGAACGGC
droEle1 scf7180000491280:897532-897695 - CTACTGCAATATGAAGA-CTTTCCTGATTTTGGCAATCTTTGCTCTGGC---CGGTAAGAACAGG--------AG------GTAT-------------CCTGTGAGTTCT--------G--AGACA-----TTCCG--------AACTAAAC---------T---AAACA-TCTCCCTCAGCTTCGGCTTTTGCTCTGGAGGAATCCGAGCGCGTCAATGGCGAGAACGGC
droRho1 scf7180000770220:3496-3656 + CTACTGCAATATGAAGA-CTTTCCTGATTTTGGCAATCTTTGCTCTGGC---CGGTGAGAACAGA---------------A----------------GTCTGTAGCTCCT--------G--AGTAA-----CCTCG--------AACTAAGT---------T---ATATATCTCATTATAGTTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAATGGCGAGAACGGC
droFic1 scf7180000453776:24486-24649 - CTACTACAAAATGAAGA-CATTCCTTCTTCTGGCTCTCTTTGCGCTAGC---TGGTAAGTTTACT--T-----T------ACAATCC-----------------TACATA--------AAA-----GAATTC-CCT--------AATTAAAT---------TGATTTAT--TCCCCTTCAGTTTCGGCTGCTCCTCTGGAGGAAGCTGAGCGCGTCCATGGCGAGAATGGC
droKik1 scf7180000302810:567947-568104 + CTGCTACAATATGAAGA-CTTTCCTGATTTTAGCAATCTTTGCGCTGGC---CGGTAAGTGCTCT-----------------------------------------------------A--ACCAA-----T-CCCTCAGAACCATCCAATGGTTAACAGT------T-A-TCCCCTCCAGCTTCGGCCTATGCTCTGGAGGAATCCGAGCGTGTCAACGGCGAGAACGGC
droAna3 scaffold_12911:3759583-3759729 - ---------TATGAAAGTCTTTATTGTTTTAGCCGCTCTG----CTGGCCGCTGGTAAGTGTTTTACTAA----------AG--------------AA--AGGACCTCCA--------A--TAGGA-----C-TCT--------AATAAAAT---------T----AAA--TTTTTTCTAGTGAGCGCCGTGCCCATCGAGG------AGCGTGTCAATGGCGAGAACGGC
droBip1 scf7180000396640:619403-619487 - CTACTACAATATGAAGA-CTTTTGTACTTTTGGCATTCGTGGCTCTGGC---CGGTAAGTTTCT----------------AGA----------------------GTTCC--------A--AGGAG-----T-C-C--------ATTTAATA-------------------------------------------------------------------------------
dp5 2:8449605-8449768 - ATACAACAACATGAAGA-CCGTTATTCTTTTGGCGTTCTTTGCTCTGGC---CGGTGAGTCTTT----------------AGAATCATACC-----CCTAA-------------------------ACATTC-CTT--------AACTAACGAATTATCAT------T-A-TGTCTGATAGCTTCGGCCTATGCTTTGGAGGAAGCTGACCGCGTCAATGGCGAGAACGGC
droPer2 scaffold_0:2281487-2281650 - ATACAACAACATGAAGA-CCATTATTCTGTTGGCGTTCTGTGCTCTGGC---CGGTGAGCCTTT----------------AGAATCATACC-----CCTAA-------------------------ACATTC-CTT--------AACTAACGAATTATCAT------T-A-TGTCTGATAGCTTCGGCCTATGCTTTGGAGGAAGCTGACCGCGTCAATGGCGAGAACGGC
droWil2 scf2_1100000004902:7750308-7750459 + ----------ATGAAGA-CCATTTTATTTGTAGCATTCTTTGCACTCGCTGCTGGTAAGCTCACA---------------CA--------------CATGT-GAAATGCC--------T--GAGTA-----T-CGC--------GTCTAAAT---------TA---TAA--ATGTTTTCAGCTTCGGCATTCGCCTTGGAAGAGGCTGACCGTGTTAATGGAGAAAACGGC
droVir3 scaffold_13047:9750946-9751094 + dvi_16223 ----------ATGAAGA-CTATTTGGCTTTTGGCTTTCTGTGCGCTAGC---GGGTAAATGTTAC--CAT-------------------------------TTTGTTGGA--------T--GAGAA-----T-CCT--------TAGCAATT---------ACTTTGAA--CTCTGAAAAGCTTCGGCCTATGCTATCGAGGAGTCCGACCGTGTGAATGGCGAGAACGGC
droMoj3 scaffold_6540:9640551-9640705 - ---------TATGAAGA-CTATTTGGCTCTTGACTTTCTGTGCACTTGC---TGGTAATTTTCAT--TAA----------TA--------------CA--TGGGGTTCGC--------T--CAGCT-----C-GTT--------AACATATT---------CCTACAAT--TCCCATACAGCTTCGGTCTGCGCTATTCCTGAGTCCGAGCGCGAGAATGGAGAGAATGGC
droGri2 scaffold_14906:2621496-2621654 + ---------TATGAAGA-CTATTTTGCTTTTGGCATTCTGTGCGCTAGC---GGGTAAATACAAG--CATTATATACCTTAGAAT--------------------ATCAT--------G--ATATA-----T-ATT--------CTTGGAAC---------TGTAAAC----CATCGACAGCTTCGGCCTACGCTTTGGAGGAGTCGGAACGTGTGAATGGAGAGAACGGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTACTGCGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTGCACTGGC---CGGTAAGAATATA---------------AG--------------AG-TTTCTGTTTCT--------A--AAGAA-----T-CCT--------ATCTAATA---------TGTTAAAC--ATCCTTTCAGCTTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGA.......2119.00905300000000100000
.........................................................................................................................................................................................GGCTATTCCGATCAAGGA............................1817.00705110000000000000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCC..............2016.00604020000000000000
..............AGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................1916.00602130000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGA.......2216.00605010000000000000
.........................GATTTTGGCATTCTTTGCACT.........................................................................................................................................................................................2116.00601140000000000000
.........................................................................................................................................................................................GGCTATTCCGATCAAGGAATCTGAGC....................2616.00604200000000000000
.......GTTATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2614.00401030000000000000
.........TATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2413.00302010000000000000
............................................................................................................................................................................................TATTCCGATCAAGGAATCTGAGCGC..................2513.00303000000000000000
...................................................................................................................................................................................................ATCAAGGAATCTGAGCGC..................1813.00303000000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAG......2213.00300020000000100000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGC..................1913.00302010000000000000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGGA.......2713.00302100000000000000
.........................GATTTTGGCATTCTTTGCACTGGC---...................................................................................................................................................................................2413.00300030000000000000
............................TTTGGCATTCTTTGCACTGGC---...................................................................................................................................................................................2113.00300030000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGA.....2313.00302010000000000000
....................................................................................................................................................................................GCTTCGGCTATTCCGATCAAGG.............................2212.00200020000000000000
.....................................................................................................................................................................................CTTCGGCTATTCCGATCAAGGAATCTGA......................2812.00200020000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGG.........1912.00201000000000100000
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCCATGGGGA.......2612.00202000000000000000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGG.........2112.00200020000000000000
........................................................................................................................................................................................CGGCTATTCCGATCAAGG.............................1812.00201010000000000000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTCCATGG..........2712.00200020000000000000
..........ATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2312.00202000000000000000
....................................................................................................................................................................................GCTTCGGCTATTCCGATCAAGGA............................2312.00200020000000000000
.............................................................................................................................................................................................ATTCCGATCAAGGAATCTGAGCGC..................2411.00101000000000000000
..................CATTCCTGATTTTGGCATTCTTTGCACC.........................................................................................................................................................................................2811.00101000000000000000
CTACTGCGTTATGAAGA-CATT.................................................................................................................................................................................................................2111.00100010000000000000
............................................................................................................................................................................................TATTCCGATCAAGGAATCTGAGCGCGTC...............2811.00101000000000000000
...CTGCGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2111.00100010000000000000
........................................................................................................................................................................................................GGAATCTGAGCGCGTCCAT............1911.00100010000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGA.....2411.00100010000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGG..........1911.00100010000000000000
.....................................................GGTAAGAATATA---------------AG--------------AG-TTTCTG..............................................................................................................................2211.00100010000000000000
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGG.......2011.00100100000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATG...........1811.00101000000000000000
............................TTTGGCATTCTTTGCACT.........................................................................................................................................................................................1811.00100100000000000000
.........TATGAAGA-CATTCCTGATTTTGGCAT...................................................................................................................................................................................................2611.00100100000000000000
...........................TTTTGGCATTCTTTGCACTGGC---...................................................................................................................................................................................2211.00100010000000000000
..............AGA-CATTCCTGATTTTGGCATTCT................................................................................................................................................................................................2411.00100010000000000000
..........................ATTTTGGCATTCTTTGCACTGGC---...................................................................................................................................................................................2311.00100010000000000000
.........................................................................................................................................................................................GGCTATTCCGATCAAGGAAT..........................2011.00101000000000000000
...............GA-CATTCCTGATTTTGGCATTCTT...............................................................................................................................................................................................2411.00100010000000000000
........................................................................................................................................................................................CGGCTATTCCGATCAAGGA............................1911.00100010000000000000
...............................................................................................................................................................................................TCCGATCAAGGAATCTGAGCGCGTC...............2511.00101000000000000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTCC..............2511.00101000000000000000
....TGCGTTATGAAGA-CATTCCTGAT...........................................................................................................................................................................................................2311.00100010000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAA....2511.00101000000000000000
.....................TCCTGATTTTGGCATTCTTTGC............................................................................................................................................................................................2211.00100100000000000000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATG...........1911.00100100000000000000
..............................................................................................................................................................................................TTCCGATCAAGGAATCTGAGCGC..................2311.00101000000000000000
CTACTGCGTTATGAAGA-C....................................................................................................................................................................................................................1811.00100100000000000000
...............GA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................1811.00100010000000000000
...........TGAAGA-CATTCCTGATTTTGGCAT...................................................................................................................................................................................................2411.00100010000000000000
CTACTGCGTTATGAAGA-CATTC................................................................................................................................................................................................................2211.00100010000000000000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGA.......1911.00100000000000100000
.........TATGAAGA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2711.00101000000000000000
.................................................................................................................................................................................................CGATCAAGGAATCTGAGCGCGTCC..............2411.00101000000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAA....2411.00100010000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGG..........1811.00101000000000000000
.....................................................................................................................................................................................CTTCGGCTATTCCGATCAAGG.............................2111.00101000000000000000
............GAAGA-CATTCCTGATTTTGGCATTC.................................................................................................................................................................................................2511.00101000000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAAC...2611.00100010000000000000
............................................................................................................................................................................................TATTCCGATCAAGGAATCT........................1911.00100001000000000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGC..................2111.00100010000000000000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGGAG......2811.00101000000000000000
.........................................................................................................................................................................................GGCTATTCCGATCAAGGAATCTGAGCGC..................2811.00101000000000000000
........................TGATTTTGGCATTCTTTGCACT.........................................................................................................................................................................................2211.00100010000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAACG..2611.00100010000000000000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGGAGAAC...2711.00100010000000000000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCA.............2111.00100010000000000000
............GAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2111.00101000000000000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTCCATG...........2811.00100010000000000000
CTACTGCGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2411.00101000000000000000
..........ATGAAGA-CATTCCTGATTTTGGCATTCT................................................................................................................................................................................................2811.00100010000000000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTC...............2411.00101000000000000000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGG.........2511.00100010000000000000
CTACTGCGTTATGAAGA-CATTCCTG.............................................................................................................................................................................................................2511.00100010000000000000
.....................TCCTGATTTTGGCATTCTTTGCA...........................................................................................................................................................................................2311.00100010000000000000
........................................................................................................................................................................................CGGCTATTCCGATCAAGGAATCTGAGCGC..................2911.00100010000000000000
...............GA-CATTCCTGATTTTGGCATTC.................................................................................................................................................................................................2211.00100010000000000000
.TACTGCGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2311.00100010000000000000
...................ATTCCTGATTTTGGCATTCTTTGCACT.........................................................................................................................................................................................2711.00100010000000000000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAGAA....2211.00100010000000000000
...................ATTCCTGATTTTGGCATTCTTTGCACG.........................................................................................................................................................................................2711.00101000000000000000
.............AAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2011.00100010000000000000
....................TTCCTGATTTTGGCATTCTTT..............................................................................................................................................................................................2111.00100010000000000000
...............GA-CATTCCTGATTTTGGCAT...................................................................................................................................................................................................2011.00100010000000000000
....TGCGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2011.00100010000000000000
droSec2
CTACTGCGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTGCTCTGGC---CGGTAAGAATTTA---------------AG--------------AG-TTTATATTTCT--------A--AAGAA-----T-CCC--------ATCTAATA---------TGTTAAAC--ATCCTTTCAGCTTCGGCTATTCCGATCAAGAAATCTGAGCGCGTCCATGGGGAGAACGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGA.......22114.001404100
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGA.......2117.0070160
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGG.........1914.0040040
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGA.......1914.0040040
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGA.....2313.0030030
.........TATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2413.0030030
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGG........1813.0030030
........................................................................................................................................................................................................GAAATCTGAGCGCGTCCATGGGGA.......2413.0030120
.....................................................................................................................................................................................................CAAGAAATCTGAGCGCGTCCATGGGGA.......2712.0020020
...........TGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2212.0020020
CTACTGCGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2412.0020020
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAAC...2612.0020020
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGA.....2412.0020020
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGA.......2012.0020020
CTACTGCGTTATGAAGA-CA...................................................................................................................................................................................................................1911.0010010
CTACTGCGTTATGAAGA-CATTCCTGA............................................................................................................................................................................................................2611.0010010
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGG.........2011.0010010
......................................................................................................................................................................................................AAGAAATCTGAGCGCGTCCATGGGGA.......2611.0010010
.......................CTGATTTTGGCATTCTTTG.............................................................................................................................................................................................1911.0010010
.......................................................................................................................................................................................................AGAAATCTGAGCGCGTCCATGG..........2211.0010010
................................................................................................................................................................................................................AGCGCGTCCATGGGGAGA.....1811.0010010
...............GA-CATTCCTGATTTTGGCA....................................................................................................................................................................................................1911.0010010
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGAGAAC...2411.0010010
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAGAACGGC2611.0010010
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGG........2111.0010010
........................................................................................................................................................................................................GAAATCTGAGCGCGTCCATGGGGAGA.....2611.0010010
...........................................................................................................................................................................................CTATTCCGATCAAGAAATCTGAGCGC..................2611.0010010
.......................................................................................................................................................................................................AGAAATCTGAGCGCGTCCATGGGGAGA.....2711.0010010
CTACTGCGTTATGAAGA-CATTCCTG.............................................................................................................................................................................................................2511.0010010
.....................................................................................................................................................................................................CAAGAAATCTGAGCGCGTC...............1911.0010010
..............................................................................................................................................................................................................TGAGCGCGTCCATGGGGAG......1911.0010010
...............................................................................................................................................................................................................GAGCGCGTCCATGGGGAGAAC...2111.0010010
..........ATGAAGA-CATTCCTGATTTTGGCA....................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................ATTCCGATCAAGAAATCTGAGCGCGTC...............2711.0010010
...CTGCGTTATGAAGA-CATTCCTGA............................................................................................................................................................................................................2311.0010010
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAGAAC...2311.0010010
..............................................................................................................................................................................................................TGAGCGCGTCCATGGGGA.......1811.0010010
..................................................................................................................................................................................................................CGCGTCCATGGGGAGAAC...1811.0010010
...................................................................................................................................................................................................ATCAAGAAATCTGAGCGCGTC...............2111.0010010
..........ATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2311.0010010
CTACTGCGTTATGAAGA-C....................................................................................................................................................................................................................1811.0010010
...................................................................................................................................................................................................ATCAAGAAATCTGAGCGCGTCCATGGG.........2711.0010010
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAAC...2511.0010010
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAG......2011.0010010
.....................................................................................................................................................................................................CAAGAAATCTGAGCGCGTCC..............2011.0010010
dm3
CCGCTACGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTGCTCTGGC---CGGTAAGAATTTA---------------AG--------------AA-TTTCCATTTTT--------A--AAGAA-----T-ACT--------GTCTAACA---------TGTAACAC--ATCCTTTCAGCCTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGA.......2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000002010000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGA.....2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000101000000
................................................................................................................................................................................................................AGCGCGTCCATGGGGAGA.....1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGA.......2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000010000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGG..........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGC..................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGA.......1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGG.........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................GGCTATTCCGATCAAGGA............................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGGA.......2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGG........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGC..................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAAC...2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCT...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGA-CATTCCTGATTTTGG......................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAGA.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGA.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGG........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................GAGCGCGTCCATGGGGAGA.....1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.........TATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
CCGCTACGTTATGAAGA-CATT.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGG.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAACG..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..GCTACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................TCCGATCAAGGAATCTGAGCGCGTC...............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTC...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................CGGCTATTCCGATCAAGGA............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTCCAT............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTCCGATCAAGGAATCTGAGCGCGTCCA.............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................CGATCAAGGAATCTGAGCGC..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGG.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGAGAAC...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGG.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGA.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTC...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................GATTTTGGCATTCTTTGCTCT.........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TACGTTATGAAGA-CATTCCTGAT...........................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................ATTCCGATCAAGGAATCTGAGCGC..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTC...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTACTACGTTATGAAGA-CATTCCTGATTTTGGCATTCTTTACCCTGGC---CGGTAAAATATA----------------AAAAACA---------AA-ATTAAATTTCT--------A--AAAAA-----T-CCT--------ATCTAAAA---------TGTAACAC--GTCCTTTCAGCTTCGGCTATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGA.......211525.0052593070357680
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGA.......221215.0021535010157220
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAG......221106.001063101048260
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGGA.......23171.0071110305250
CTACTACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................24168.00681102025300
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGA.....23143.004380102680
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAG......23135.0035100102130
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGA.......19127.002730101850
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGG.........19125.0025200012110
.........................................................................................................................................................................................GGCTATTCCGATCAAGGA............................18121.002190000120
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGA.......20121.002110000920
CTACTACGTTATGAAGA-C....................................................................................................................................................................................................................18120.002010001180
CTACTACGTTATGAAGA-CA...................................................................................................................................................................................................................19116.00164000480
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGA.....24116.00164000930
CTACTACGTTATGAAGA-CATTC................................................................................................................................................................................................................22115.001500103110
.........TATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................24113.00135000800
..........ATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................23112.00124000350
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAAC...25112.00124000440
..............AGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................19112.001212000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGG.........20111.001110001000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTC...............22110.00105000410
..............AGA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2219.0097000020
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGG........2019.0091000620
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGGA.......2718.0083000410
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGGAG......2418.0085000300
.......GTTATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2617.0072000320
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTCC..............2317.0073000130
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAAC...2617.0071000420
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGG..........1917.0072010400
CTACTACGTTATGAAGA-CATTCCTG.............................................................................................................................................................................................................2516.0063000120
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAG......2016.0062000220
..............................................................................................................................................................................................................TGAGCGCGTCCATGGGGA.......1816.0061000500
.....................................................................................................................................................................................CTTCGGCTATTCCGATCAAGGA............................2215.0051000040
................A-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2015.0053000200
...............GA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2115.0050000230
.........TATGAAGA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2714.0041000300
....................................................................................................................................................................................GCTTCGGCTATTCCGATCAAGGA............................2314.0044000000
..........ATGAAGA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2614.0040000400
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGAGA.....2214.0041000300
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGG..........1814.0043000100
.............AAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2014.0041000030
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCCATGGGGA.......2614.0044000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAA....2414.0041000120
...............GA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................1814.0044000000
............GAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2114.0043000010
....................................................................................................................................................................................GCTTCGGCTATTCCGATCAAGG.............................2214.0044000000
CTACTACGTTATGAAGA-CATTCC...............................................................................................................................................................................................................2314.0040000220
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTCCATGG..........2713.0031000200
...................ATTCCTGATTTTGGCATT..................................................................................................................................................................................................1813.0031000020
.......................................................................................................................................................................................................AGGAATCTGAGCGCGTCCATGGGGA.......2513.0032000010
CTACTACGTTATGAAGA-CATT.................................................................................................................................................................................................................2113.0030000120
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGGAGA.....2513.0030000300
..........ATGAAGA-CATTCCTGATTTTGG......................................................................................................................................................................................................2213.0031000200
.........................GATTTTGGCATTCTTTACCCTGGC---C..................................................................................................................................................................................2513.0033000000
............GAAGA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2413.0031000110
........................................................................................................................................................................................................GGAATCTGAGCGCGTCCATGGGGA.......2413.0032000100
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGG........2113.0031000200
..................CATTCCTGATTTTGGCATT..................................................................................................................................................................................................1913.0033000000
CTACTACGTTATGAAGA-CATTCCTGA............................................................................................................................................................................................................2613.0033000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATG...........1813.0031000200
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGC..................1913.0030000300
..............................................................................................................................................................................................................TGAGCGCGTCCATGGGGAG......1912.0020000110
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGA........2012.0022000000
.........TATGAAGA-CATTCCTGATTTTG.......................................................................................................................................................................................................2212.0022000000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGGAG......2812.0020000200
..............AGA-CATTCCTGATTTTGGCATTC.................................................................................................................................................................................................2312.0021000100
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAA....2512.0021000010
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTC...............1812.0020000110
.............AAGA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2312.0021000100
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGAG......2112.0022000000
...............................GGCATTCTTTACCCTGGC---C..................................................................................................................................................................................1912.0022000000
.TACTACGTTATGAAGA-CATTCCTGAT...........................................................................................................................................................................................................2612.0022000000
.................................................................................................................................................................................................CGATCAAGGAATCTGAGCGCGT................2212.0021000100
.........................GATTTTGGCATTCTTTACCCT.........................................................................................................................................................................................2112.0020000200
.....ACGTTATGAAGA-CATTCCTGATTTTGG......................................................................................................................................................................................................2712.0021000100
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGG.........1812.0020000200
...................ATTCCTGATTTTGGCATTCT................................................................................................................................................................................................2012.0022000000
.............AAGA-CATTCCTGATTTTGG......................................................................................................................................................................................................1912.0022000000
.................................CATTCTTTACCCTGGC---CG.................................................................................................................................................................................1812.0022000000
......CGTTATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2712.0020000020
.........TATGAAGA-CATTCCTGATTTTGG......................................................................................................................................................................................................2312.0021000100
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGG..........2012.0022000000
.........................GATTTTGGCATTCTTTACCCTGGC---...................................................................................................................................................................................2412.0021100000
...............GA-CATTCCTGATTTTGGCAT...................................................................................................................................................................................................2012.0020000110
.....................................................................................................................................................................................CTTCGGCTATTCCGATCAAGG.............................2112.0022000000
..ACTACGTTATGAAGA-CATTCCTG.............................................................................................................................................................................................................2312.0020000200
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTC...............1912.0020000200
........................................................................................................................................................................................CGGCTATTCCGATCAAGGA............................1912.0021000010
..ACTACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2212.0020000200
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAGA.....2112.0020000200
.......................................................................................................................................................................................................AGGAATCTGAGCGCGTCCATGGG.........2312.0021000100
CTACTACGTTATGAAGA-CATTCCTGAT...........................................................................................................................................................................................................2712.0020000020
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGGAGAA....2611.0010000100
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGT.....2311.0010000010
...................................................................................................................................................................................................ATCAAGGAATCTGAGCGCGTCCATGG..........2611.0010000100
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGG........1911.0011000000
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCCATGGGGAG......2711.0011000000
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCC..............1911.0010000100
............GAAGA-CATTCCTGATTTTG.......................................................................................................................................................................................................1911.0011000000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGT................2111.0010000100
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCCATGGGGAGA.....2811.0010000100
..........ATGAAGA-CATTCCTGATTTTG.......................................................................................................................................................................................................2111.0010000100
.......GTTATGAAGA-CATTCCTGAT...........................................................................................................................................................................................................2011.0010000100
........TTATGAAGA-CATTCCTGATTTTGGCATT..................................................................................................................................................................................................2811.0010000100
...............................................................................................................................................................................................................GAGCGCGTCCATGGGGAGA.....1911.0010000010
.................................................................................................................................................................................................CGATCAAGGAATCTGAGC....................1811.0010000010
.........................GATTTTGGCATTCTTTACCCTGGC---CG.................................................................................................................................................................................2611.0011000000
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCCATGGGAG.......2611.0011000000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGG........2211.0010000100
.................................................................................................................................................................................................CGATCAAGGAATCTGAGCGCGTC...............2311.0011000000
.........TATGAAGA-CATTCCTGATTTTGGCA....................................................................................................................................................................................................2511.0010000100
...CTACGTTATGAAGA-CATTCCTGATT..........................................................................................................................................................................................................2511.0011000000
..............................................................................................................................................................................................................TGAGCGCGTCCATGGGGAGAACGGC2511.0010000100
.....ACGTTATGAAGA-CATTCCTGATTTTGGC.....................................................................................................................................................................................................2811.0010000100
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGT................2311.0010000100
...CTACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2111.0010000010
.......................CTGATTTTGGCATTCTTTACCCTGGC---C..................................................................................................................................................................................2711.0011000000
.........................................................................................................................................................................................GGCTATTCCGATCAAGGAAT..........................2011.0010000010
.........................................................................................................................................................................................GGCTATTCCGATCAAGGAATCTGAG.....................2511.0011000000
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCCATGGGGC.......2611.0010010000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGG........1811.0011000000
.....ACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................1911.0011000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAT......2211.0010000100
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGC................2111.0010000100
..................CATTCCTGATTTTGGCATTCT................................................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTCC..............2511.0010000100
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGAACG..2711.0010000100
.......................................................................................................................................................................................TCGGCTATTCCGATCAAGG.............................1911.0011000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAACG..2611.0011000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAACGG.2711.0011000000
...............................GGCATTCTTTACCCTGGC---CG.................................................................................................................................................................................2011.0011000000
...CTACGTTATGAAGA-CATTCCTGAT...........................................................................................................................................................................................................2411.0011000000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTCCATGGG.........2811.0010000100
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTC...............2411.0011000000
CTACTACGTTATGAAGA-CATTCCTGAC...........................................................................................................................................................................................................2711.0010000010
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCC..............2011.0011000000
......................................................................................................................................................AA---------TGTAACAC--GTCCTTTCAG..................................................2011.0011000000
..........................ATTTTGGCATTCTTTACCCTGGC---...................................................................................................................................................................................2311.0011000000
..........................ATTTTGGCATTCTTTACCCTGGC---C..................................................................................................................................................................................2411.0010100000
.............................................................................................................................................................................................ATTCCGATCAAGGAATCTGAGCGCGTC...............2711.0010000100
......CGTTATGAAGA-CATTCCTGATTTTGG......................................................................................................................................................................................................2611.0011000000
...................ATTCCTGATTTTGGCATTCTTTACCCTG........................................................................................................................................................................................2811.0010000100
.....................................................................................................................................................................................CTTCGGCTATTCCGATCAAGGAATCTGA......................2811.0011000000
....................................................................................................................................................................................................TCAAGGAATCTGAGCGCGTCCATGG..........2511.0011000000
...............GA-CATTCCTGATTTTGGCA....................................................................................................................................................................................................1911.0011000000
..................................ATTCTTTACCCTGGC---CGGT...............................................................................................................................................................................1911.0010000100
.................................CATTCTTTACCCTGGC---CA.................................................................................................................................................................................1811.0011000000
.........................GATTTTGGCATTCTTTACCCTG........................................................................................................................................................................................2211.0011000000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGG.........2111.0010000100
................A-CATTCCTGATTTTGGCATTCTTTACCCT.........................................................................................................................................................................................2911.0011000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGG.......2111.0011000000
...........................TTTTGGCATTCTTTACCCTGGC---CG.................................................................................................................................................................................2411.0011000000
.........................................................................................................................................................................................GGCTATTCCGATCAAGGAATC.........................2111.0011000000
....TACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2011.0011000000
CTACTACGTTATGAAGA-CATTCA...............................................................................................................................................................................................................2311.0010000010
........................TGATTTTGGCATTCTTTACCCTGGC---C..................................................................................................................................................................................2611.0011000000
.......................CTGATTTTGGCATTCTTTACCCT.........................................................................................................................................................................................2311.0010000010
.................................................................................................................................................................................................CGATCAAGGAATCTGAGCGCGTCC..............2411.0011000000
......................................................................................................................................................................................................AAGGAATCTGAGCGCGTCCATG...........2211.0010000010
..............AGA-CATTCCTGATTTTGGCA....................................................................................................................................................................................................2011.0010000010
........................................................................................................................................................................................CGGCTATTCCGATCAAGG.............................1811.0010000010
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTCCATG...........2611.0011000000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAACGGC2811.0010000100
......................................................................................................................................................................................TTCGGCTATTCCGATCAAGG.............................2011.0011000000
.TACTACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2311.0010000010
..........ATGAAGA-CATTCCTGATTTTGGCATTCT................................................................................................................................................................................................2811.0010000100
........................TGATTTTGGCATTCTTTACCCTGGC---...................................................................................................................................................................................2511.0011000000
.......GTTATGAAGA-CATTCCTGATTTTG.......................................................................................................................................................................................................2411.0011000000
..ACTACGTTATGAAGA-CATTC................................................................................................................................................................................................................2011.0010000100
droYak3
CTACTACGTTATGAAGA-CATTCCTGATTCTGGCATTCTTTGCTCTGGC---CGGTAAGACATA----------------AG--------------AA-CTAAAATTCCA--------A--AAGAA-----T-TCT--------ATTCAAAT-CCTATTC------CT-A-TTCCTTTCAGCTTCGGCGATTCCGATCAAGGAATCTGAGCGCGTCCATGGGGAGAACGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGA.......21120.0020102200150000
.........TATGAAGA-CATTCCTGATTCTGGCATT..................................................................................................................................................................................................2717.00750200000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGA.......2217.00710000060000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGA.......1916.00620000040000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGG.........1915.00500000050000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAAC...2515.00501100120000
...............GA-CATTCCTGATTCTGGC.....................................................................................................................................................................................................1814.00420200000000
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGGA.......2014.00400010030000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGGGA.......2314.00400100030000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAGA.....2414.00400100120000
.........TATGAAGA-CATTCCTGATTCTGGC.....................................................................................................................................................................................................2414.00400100030000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAG......2213.00301000020000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGA.....2313.00300100020000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGG........2013.00300000030000
CTACTACGTTATGAAGA-C....................................................................................................................................................................................................................1812.00220000000000
..............................................................................................................................................................................................TTCCGATCAAGGAATCTGAGCGC..................2312.00200001010000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGG.........2012.00200000020000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGGGGAGAA....2412.00200100010000
............................................................................................................................................................................................................TCTGAGCGCGTCCATGGGG........1912.00220000000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATG...........1812.00210100000000
.............................................................................................................................................................................................ATTCCGATCAAGGAATCTGAGCGC..................2412.00200100010000
.........................................................................................................................................................................................................GAATCTGAGCGCGTCCATGGG.........2112.00200010010000
..........................ATTCTGGCATTCTTTGCTCTGGC---C..................................................................................................................................................................................2412.00220000000000
..............AGA-CATTCCTGATTCTGGC.....................................................................................................................................................................................................1911.00110000000000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGC..................2111.00100000010000
....................................................................................................................................................................................GCTTCGGCGATTCCGATCAAGGA............................2311.00100000010000
...........................................................................................................................................................................................................ATCTGAGCGCGTCCATGG..........1811.00100100000000
.....ACGTTATGAAGA-CATTCCTGATTCTGGC.....................................................................................................................................................................................................2811.00100100000000
...................ATTCCTGATTCTGGCATTCTT...............................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................TCCGATCAAGGAATCTGAGCGC..................2211.00100000010000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAC......2011.00100100000000
............................................................................................................................................................................................GATTCCGATCAAGGAATCTGAGCGC..................2511.00100000010000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGT................2111.00100000010000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGC..................1911.00100100000000
CTACTACGTTATGAAGA-CATTCCT..............................................................................................................................................................................................................2411.00100000010000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGG........2111.00100000010000
..........ATGAAGA-CATTCCTGATTCTGG......................................................................................................................................................................................................2211.00100000010000
.....................................................................................................................................................................................................CAAGGAATCTGAGCGCGTCCATGGGGA.......2711.00100000010000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTC...............2411.00100000010000
.......................................................................................................................................................................................................AGGAATCTGAGCGCGTCCATGGGGA.......2511.00100000010000
..................................................................................................................................................................................................GATCAAGGAATCTGAGCGCGTCCATGGG.........2811.00100000010000
........TTATGAAGA-CATTCCTGATTCTGGCATT..................................................................................................................................................................................................2811.00100000010000
............................................................................................................................................................................................GATTCCGATCAAGGAATCTGAGCGCGTCC..............2911.00100000010000
..........ATGAAGA-CATTCCTGATTCTGGC.....................................................................................................................................................................................................2311.00100100000000
........TTATGAAGA-CATTCCTGATTCTGGC.....................................................................................................................................................................................................2511.00100000010000
......................................................................................................................................................................................TTCGGCGATTCCGATCAAGG.............................2011.00100001000000
...............GA-CATTCCTGATTCTGGCATTCTTTGCC...........................................................................................................................................................................................2811.00100100000000
..........................................................................................................................................................................................................AATCTGAGCGCGTCCATGGGGAG......2311.00101000000000
.........................GATTCTGGCATTCTTTGCT...........................................................................................................................................................................................1911.00100100000000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAGAAC...2311.00100000010000
CTACTACGTTATGAAGA-CATT.................................................................................................................................................................................................................2111.00101000000000
.........................GATTCTGGCATTCTTTGCTCTGGC---C..................................................................................................................................................................................2511.00100100000000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGT.......1911.00100000010000
................................................................................................................................................................................................CCGATCAAGGAATCTGAGCGCGTCCATGG..........2911.00100000010000
.............................................................................................................................................................................................................CTGAGCGCGTCCATGGGGAGA.....2111.00100000010000
........TTATGAAGA-CATTCCTGATTCTGGCATTC.................................................................................................................................................................................................2911.00100000010000
droEug1
CAACTACATTATGAAGA-CATTCCTAATTTTAGCACTCTTTGCTCTAGC---CGGTAGGTTTCAA--------TA------CAATCC-------------TTTGAGGATATAATTATAA--AATAA-----T-AAT--------CTTAAAAT---------T-CTCTC-T-TTTCTTTCAGCTTCGGCTTTTCCTGTGGAGGAATCTGAGCGCGTCCATGGCGAGAACGGCSizeHit CountTotal NormTotal
No Reads
droBia1
CTACAACATTATGAAGA-CATTCCTGATTCTGGCACTCTTTGCTCTAGC---CGGTAGGTTTTA----------------ATAATCATGACTGGAGAA-C---GAATCCT--------A--AAGAA-----T-TCG-----------------------------------CTCTTTTCAGTTTCTGCCTTTCCCTTGGAGGAATCGGAGCGCATCCATGGTGAGAACGGCSizeHit CountTotal NormTotal
No Reads
droTak1
TTACTACATAATGAAGA-CATTCCTGATTCTGGCACTCTTTGCTGCAGC---CGGTAAGTTCTAA--------AT------G--------------AATATGAAATTCCT--------G--AAGAA-----T-TCT--------CTTTTAAC---------TATG-AAC--TCCCTTTCAGTTTCGGCTTTTCCCCTGGAGGAATCTGAGCGCGTCCATGGCGAGAACGGCSizeHit CountTotal NormTotal
No Reads
droEle1
CTACTGCAATATGAAGA-CTTTCCTGATTTTGGCAATCTTTGCTCTGGC---CGGTAAGAACAGG--------AG------GTAT-------------CCTGTGAGTTCT--------G--AGACA-----TTCCG--------AACTAAAC---------T---AAACA-TCTCCCTCAGCTTCGGCTTTTGCTCTGGAGGAATCCGAGCGCGTCAATGGCGAGAACGGCSizeHit CountTotal NormTotal
No Reads
droRho1
CTACTGCAATATGAAGA-CTTTCCTGATTTTGGCAATCTTTGCTCTGGC---CGGTGAGAACAGA---------------A----------------GTCTGTAGCTCCT--------G--AGTAA-----CCTCG--------AACTAAGT---------T---ATATATCTCATTATAGTTTCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAATGGCGAGAACGGCSizeHit CountTotal NormTotal
No Reads
droFic1
CTACTACAAAATGAAGA-CATTCCTTCTTCTGGCTCTCTTTGCGCTAGC---TGGTAAGTTTACT--T-----T------ACAATCC-----------------TACATA--------AAA-----GAATTC-CCT--------AATTAAAT---------TGATTTAT--TCCCCTTCAGTTTCGGCTGCTCCTCTGGAGGAAGCTGAGCGCGTCCATGGCGAGAATGGCSizeHit CountTotal NormTotal
No Reads
droKik1
CTGCTACAATATGAAGA-CTTTCCTGATTTTAGCAATCTTTGCGCTGGC---CGGTAAGTGCTCT-----------------------------------------------------A--ACCAA-----T-CCCTCAGAACCATCCAATGGTTAACAGT------T-A-TCCCCTCCAGCTTCGGCCTATGCTCTGGAGGAATCCGAGCGTGTCAACGGCGAGAACGGCSizeHit CountTotal NormTotal
No Reads
droAna3
---------TATGAAAGTCTTTATTGTTTTAGCCGCTCTG----CTGGCCGCTGGTAAGTGTTTTACTAA----------AG--------------AA--AGGACCTCCA--------A--TAGGA-----C-TCT--------AATAAAAT---------T----AAA--TTTTTTCTAGTGAGCGCCGTGCCCATCGAGG------AGCGTGTCAATGGCGAGAACGGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................GTGCCCATCGAGG------AGCGTGTC...............21110.0010010180
....................................................................................................................................................................................GTGAGCGCCGTGCCCATCGAGG------AGC....................2516.006000042
......................ATTGTTTTAGCCGCTCTG----CTGGC......................................................................................................................................................................................2314.004130000
..........................................................................................................................................................................................GCCGTGCCCATCGAGG------AGCGTGTC...............2414.004100030
..........ATGAAAGTCTTTATTGTTTTAGCCGCT..................................................................................................................................................................................................2714.004100003
............................................................................................................................................................................................CGTGCCCATCGAGG------AGCGTGTCAATGGC.........2813.003000030
.........................GTTTTAGCCGCTCTG----CTGGC......................................................................................................................................................................................2013.003300000
..........................................................................................................................................................................................GCCGTGCCCATCGAGG------AGC....................1913.003120000
...................................................................................................................................................................................................ATCGAGG------AGCGTGTCAATGGCGAGAAC...2713.003100020
.............................................................................................................................................................................................GTGCCCATCGAGG------AGCGTGTCAATGGC.........2713.003000030
.........................GTTTTAGCCGCTCTG----CTGGCCGCTGT................................................................................................................................................................................2612.002100010
.........................................................................................................................................................................................CGCCGTGCCCATCGAGG------AGCGTGTC...............2512.002000020
.......................................................................................................................................................................................AGCGCCGTGCCCATCGAGG------A......................2012.002200000
...............................................................................................................................................................................................GCCCATCGAGG------AGCGTGTCAATGGC.........2512.002010010
..................CTTTATTGTTTTAGCCGCT..................................................................................................................................................................................................1912.002011000
..................................................................................................................................................................................................CATCGAGG------AGCGTGTCAATGGC.........2212.002100010
......................................................................................................................................................................................................GAGG------AGCGTGTCAATGGCGAGAAC...2412.002200000
..............................................................................................................................................................................................TGCCCATCGAGG------AGCGTGTCA..............2112.002200000
.........................GTTTTAGCCGCTCTG----CTGGCCGCT..................................................................................................................................................................................2412.002100001
.........................GTTTTAGCCGCTCTG----CTGGCC.....................................................................................................................................................................................2112.002200000
......................ATTGTTTTAGCCGCTCTG----CTGGCCGCT..................................................................................................................................................................................2712.002200000
.....................................................................................................................................................................................................................GTCAATGGCGAGAACGGC1812.002010010
..................CTTTATTGTTTTAGCCGCTCTG----CTGGCCG....................................................................................................................................................................................2912.002200000
......................ATTGTTTTAGCCGCTCTG----CTGG.......................................................................................................................................................................................2211.001100000
............GAAAGTCTTTATTGTTTTAGCCG....................................................................................................................................................................................................2311.001100000
............GAAAGTCTTTATTGTTTTAGCC.....................................................................................................................................................................................................2211.001010000
................GTCTTTATTGTTTTAGCCG....................................................................................................................................................................................................1911.001000010
...........................TTTAGCCGCTCTG----CTGGCCGCT..................................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................CGTGTCAATGGCGAGAAC...1811.001100000
.........................................................................................................................................................................................................G------AGCGTGTCAATGGCGAGAACGG.2311.001010000
..............................AGCCGCTCTG----CTGGCCGCTGT................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................GCGCCGTGCCCATCGAGG------AGCG...................2211.001000010
......................................................................................................................................................................................................GAGG------AGCGTGTCAATGGCGAG......2111.001000010
.............................................................................................................................................................................................GTGCCCATCGAGG------AGCGTGT................2011.001000010
..................CTTTATTGTTTTAGCCGCTCTG----CTGGCC.....................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................................AGCGCCGTGCCCATCGAGG------AGCGTGTC...............2711.001000010
...................TTTATTGTTTTAGCCGCT..................................................................................................................................................................................................1811.001000001
.....................................................................................................................................................................................................CGAGG------AGCGTGTCAATGGCGA.......2111.001000010
........................................................................................................................................................................................GCGCCGTGCCCATCGAGG------AGC....................2111.001000010
........................................................................................................................................................................................................GG------AGCGTGTCAATGGCGAGA.....2011.001100000
...............................................................................................................................................................................................GCCCATCGAGG------AGCGTGTC...............1911.001100000
...................................................................................................................................................................................................ATCGAGG------AGCGTGTCAATGG..........2011.001010000
.................................................................................................................................................................................................................GCGTGTCAATGGCGAGAAC...1911.001000010
....................................................................................................................................................................................GTGAGCGCCGTGCCCATCGA...............................2011.001000010
................................CCGCTCTG----CTGGCCGCTGTG...............................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................ATCGAGG------AGCGTGTCAATGGC.........2111.001000010
.........................GTTTTAGCCGCTCTG----CTGGCCG....................................................................................................................................................................................2211.001100000
................GTCTTTATTGTTTTAGCCGCT..................................................................................................................................................................................................2111.001100000
............................................................................................................................................................................................CGTGCCCATCGAGG------AGCGTGTC...............2211.001000010
.................TCTTTATTGTTTTAGCCGCTCTG----CT.........................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................GTGTCAATGGCGAGAACGG.1911.001000010
.......................................................................................................................................................................................AGCGCCGTGCCCATCGAGG------AGC....................2211.001001000
.....................................................................................................................................................................................................CGAGG------AGCGTGTCAATGGCGAGA.....2311.001100000
.................................................................................................................................................................................................................GCGTGTCAATGGCGAGAACG..2011.001000010
...............................................................................................................................................................................................GCCCATCGAGG------AGCGTGTCAA.............2111.001000010
................GTCTTTATTGTTTTAGCC.....................................................................................................................................................................................................1811.001010000
............................................................................................................................................................................................CGTGCCCATCGAGG------AGCGT..................1911.001100000
.................................................................................................................................................................................................CCATCGAGG------AGCGTGTCAAT............2011.001010000
................GTCTTTATTGTTTTAGCCGCTCTG----CTG........................................................................................................................................................................................2711.001100000
..........................TTTTAGCCGCTCTG----CTGGCCGCT..................................................................................................................................................................................2311.001100000
...............AGTCTTTATTGTTTTAGCCGC...................................................................................................................................................................................................2111.001100000
............GAAAGTCTTTATTGTTTTAGCCGCTCT................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................GAGCGCCGTGCCCATCGAGG------A......................2111.001100000
............GAAAGTCTTTATTGTTTTAGCCGCTCTG----...........................................................................................................................................................................................2811.001100000
....................................................................................................................................................................................GTGAGCGCCGTGCCCATCGAGG------AGCGT..................2711.001000010
.........................................................................................................................................................................................................G------AGCGTGTCAATGGCGAGA.....1911.001100000
........................................................................................................................................................................................................GG------AGCGTGTCAATGGCGAGAAC...2211.001100000
.................................CGCTCTG----CTGGCCGCTGTG...............................................................................................................................................................................1940.251100000
droBip1
CTACTACAATATGAAGA-CTTTTGTACTTTTGGCATTCGTGGCTCTGGC---CGGTAAGTTTCT----------------AGA----------------------GTTCC--------A--AGGAG-----T-C-C--------ATTTAATA-------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
ATACAACAACATGAAGA-CCGTTATTCTTTTGGCGTTCTTTGCTCTGGC---CGGTGAGTCTTT----------------AGAATCATACC-----CCTAA-------------------------ACATTC-CTT--------AACTAACGAATTATCAT------T-A-TGTCTGATAGCTTCGGCCTATGCTTTGGAGGAAGCTGACCGCGTCAATGGCGAGAACGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................ATTCTTTTGGCGTTCTTTGCTCTGGC---...................................................................................................................................................................................2615.0050010200002
...................................................................................................................................................................................................TTGGAGGAAGCTGACCGC..................1813.0030000000003
...................................................................................................................................................................................................TTGGAGGAAGCTGACCGCGTC...............2113.0030000001002
............................................................................................................................................................................................CTATGCTTTGGAGGAAGCTGACCGC..................2512.0020200000000
....................GTTATTCTTTTGGCGTTCTTTGCTCTG........................................................................................................................................................................................2712.0020100000001
...................................................................................................................................................................................................TTGGAGGAAGCTGACCGCGTCAATGGC.........2712.0020000000002
..........................................................................................................................................................................................................AAGCTGACCGCGTCAATGGCGAGA.....2412.0020110000000
............................TTTGGCGTTCTTTGCTCTGGC---...................................................................................................................................................................................2112.0020000000002
......................TATTCTTTTGGCGTTCTTTGCTCTGGC---...................................................................................................................................................................................2712.0020000000002
............................................................................................................................................................................................CTATGCTTTGGAGGAAGCTGACCGCGTC...............2811.0010100000000
................................................................................................................................................................................................GCTTTGGAGGAAGCTGACCGC..................2111.0010000000001
...........................TTTTGGCGTTCTTTGCTCTG........................................................................................................................................................................................2011.0010000000001
...................................................................................................................................................................................................TTGGAGGAAGCTGACCGCGTCA..............2211.0010000000001
.........................................................................................................................................................................................................GAAGCTGACCGCGTCAATGGCGAGA.....2511.0010100000000
........................................................................................................................................................................................................GGAAGCTGACCGCGTCAATGGCGAGA.....2611.0010100000000
........ACATGAAGA-CCGTTATTCTTTTGGC.....................................................................................................................................................................................................2511.0010100000000
.....................TTATTCTTTTGGCGTTCTTTGCTCTGGC---...................................................................................................................................................................................2811.0010000000001
.........................................................................................................................................................................................GGCCTATGCTTTGGAGGA............................1821.0020200000000
.........................TCTTTTGGCGTTCTTTGCTCTGGC---...................................................................................................................................................................................2411.0010010000000
...........................................................................................................................................................................................................AGCTGACCGCGTCAATGGC.........1911.0010100000000
....................................................................................................................................................................................GCTTCGGCCTATGCTTTGGA...............................2021.0020200000000
...............GA-CCGTTATTCTTTTGGC.....................................................................................................................................................................................................1811.0010100000000
......CAACATGAAGA-CCGTTATTCTTTTGGC.....................................................................................................................................................................................................2711.0010100000000
....................GTTATTCTTTTGGCGTTCT................................................................................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................GAAGCTGACCGCGTCAATGGC.........2111.0010100000000
..............AGA-CCGTTATTCTTTTGGC.....................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................TCGGCCTATGCTTTGGAGGAAGC.........................2321.0020100000001
........................................................................................................................................................................................................GGAAGCTGACCGCGTCAATG...........2011.0010010000000
...........................................................................................................................................................................................................AGCTGACCGCGTCAATGGCGAGAACGG.2711.0010100000000
..........................................................................................................................................................................................................AAGCTGACCGCGTCAATGGCGAG......2311.0010000001000
....................GTTATTCTTTTGGCGTTCTTTGCTCT.........................................................................................................................................................................................2611.0010000000001
.........................................................................................................................................................................................................GAAGCTGACCGCGTCAATGGCGAGAAC...2711.0010000001000
...CAACAACATGAAGA-CCGTTATT.............................................................................................................................................................................................................2211.0010100000000
..ACAACAACATGAAGA-CCGTT................................................................................................................................................................................................................2011.0010010000000
....................................................................................................................................................................................GCTTCGGCCTATGCTTTGGAGGAA...........................2420.5010100000000
.......................................................................................................................................................................................TCGGCCTATGCTTTGGAG..............................1820.5010100000000
............................................................................................................................................................................................................GCTGACCGCGTCAATGGC.........1820.5010100000000
......................................................................................................................................................................................TTCGGCCTATGCTTTGGAGGA............................2120.5010100000000
............................................................................................................................................................................................................GCTGACCGCGTCAATGGCGAGA.....2220.5010100000000
........................................................................................................................................................................................CGGCCTATGCTTTGGAGGAAG..........................2120.5010000100000
droPer2
ATACAACAACATGAAGA-CCATTATTCTGTTGGCGTTCTGTGCTCTGGC---CGGTGAGCCTTT----------------AGAATCATACC-----CCTAA-------------------------ACATTC-CTT--------AACTAACGAATTATCAT------T-A-TGTCTGATAGCTTCGGCCTATGCTTTGGAGGAAGCTGACCGCGTCAATGGCGAGAACGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................GAAGCTGACCGCGTCAATGGCGAGA.....25111.0011011009
............................GTTGGCGTTCTGTGCTCTGGC---...................................................................................................................................................................................21111.0011402005
.................................................................................................................................................................................................CTTTGGAGGAAGCTGACCGC..................20110.0010900001
............................GTTGGCGTTCTGTGCTCT.........................................................................................................................................................................................1819.009801000
............................................................................................................................................................................................CTATGCTTTGGAGGAAGCTGACCGC..................2514.004000004
..........................CTGTTGGCGTTCTGTGCTCTGGC---C..................................................................................................................................................................................2414.004400000
.......................ATTCTGTTGGCGTTCTGTGCTCT.........................................................................................................................................................................................2313.003300000
.........................................................................................................................................................................................................GAAGCTGACCGCGTCAATGGCGAGAAC...2713.003000003
.........................................................................................................................................................................................................GAAGCTGACCGCGTCAATGGC.........2112.002001001
..........ATGAAGA-CCATTATTCTGTTGGC.....................................................................................................................................................................................................2312.002200000
.......................ATTCTGTTGGCGTTCTGTGCTCTGGC---...................................................................................................................................................................................2612.002100001
..........................CTGTTGGCGTTCTGTGCTC..........................................................................................................................................................................................1912.002200000
...........................................................................................................................................................................................................AGCTGACCGCGTCAATGGCGAGAAC...2511.001000001
.................................................................................................................................................................................................CTTTGGAGGAAGCTGACCGCGT................2211.001010000
.................................................................................................................................................................................................CTTTGGAGGAAGCTGACC....................1811.001100000
........................................................................................................................................................................................................GGAAGCTGACCGCGTCAATGGCGAGA.....2611.001000001
.......................ATTCTGTTGGCGTTCTGTGCTCTGGC---C..................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................GGAGGAAGCTGACCGCGT................1811.001100000
...........................................................................................................................................................................................................AGCTGACCGCGTCAATGGC.........1911.001000001
.........................TCTGTTGGCGTTCTGTGCTCTGGC---...................................................................................................................................................................................2411.001100000
.....................................................................................................................................................................................................GGAGGAAGCTGACCGCGTCA..............2011.001000001
....................................................................................................................................................................................GCTTCGGCCTATGCTTTGGA...............................2011.001100000
............................GTTGGCGTTCTGTGCTCC.........................................................................................................................................................................................1811.001100000
ATACAACAACATGAAGA-CCAT.................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................GCTTTGGAGGAAGCTGACCGCGTC...............2411.001000001
.........................................................................................................................................................ATTATCAT------T-A-TGTCTGAT....................................................1820.501100000
.....................................................................................................................................................................................................................GTCAATGGCGAGAACGGC1830.331000001
...............................................................................................................................................................................................................GACCGCGTCAATGGCGAGAAC...2130.331000001
droWil2
----------ATGAAGA-CCATTTTATTTGTAGCATTCTTTGCACTCGCTGCTGGTAAGCTCACA---------------CA--------------CATGT-GAAATGCC--------T--GAGTA-----T-CGC--------GTCTAAAT---------TA---TAA--ATGTTTTCAGCTTCGGCATTCGCCTTGGAAGAGGCTGACCGTGTTAATGGAGAAAACGGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................GGCTGACCGTGTTAATGGA.........1912.00200110
....................................................................................................................................................................................GCTTCGGCATTCGCCTTGGAAGAGGC.........................2611.00100100
........................................................................................................................................................................................................AGAGGCTGACCGTGTTAATGG..........2111.00100100
.........................ATTTGTAGCATTCTTTGCACT.........................................................................................................................................................................................2111.00110000
..........................................................................................................................................................................................................AGGCTGACCGTGTTAATGGA.........2011.00100100
..........................................................................................................................................................................................GCATTCGCCTTGGAAGAGGCTGACCGT..................2711.00101000
droVir3
----------ATGAAGA-CTATTTGGCTTTTGGCTTTCTGTGCGCTAGC---GGGTAAATGTTAC--CAT-------------------------------TTTGTTGGA--------T--GAGAA-----T-CCT--------TAGCAATT---------ACTTTGAA--CTCTGAAAAGCTTCGGCCTATGCTATCGAGGAGTCCGACCGTGTGAATGGCGAGAACGGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................CGAGGAGTCCGACCGTGTGAAT............2213.003001000000000000000000010000001000000000000000000000000000000000
...................................................................................................................................................................................................ATCGAGGAGTCCGACCGTGTGAAT............2413.003001100000000000000000000000000000000000000000000000000000000010
..........................CTTTTGGCTTTCTGTGCGC..........................................................................................................................................................................................1912.002000100000000000000000000000001000000000000000000000000000000000
..................CTATTTGGCTTTTGGCTTTCTGTGCGCT.........................................................................................................................................................................................2812.002100100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CTATCGAGGAGTCCGACCGTGTGAAT............2612.002001100000000000000000000000000000000000000000000000000000000000
..................CTATTTGGCTTTTGGCTTTCTGT..............................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GAGTCCGACCGTGTGAAT............1811.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................ATCGAGGAGTCCGACCGTGTGAATGGCG........2811.001000100000000000000000000000000000000000000000000000000000000000
..........ATGAAGA-CTATTTGGCTTTTGGC.....................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
....................ATTTGGCTTTTGGCTTTCTGTGCGC..........................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GACCGTGTGAATGGCGAGAAC...2111.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GGAGTCCGACCGTGTGAATGGCGAG......2511.001000000000000000000000000000000000000000000000000000000000000010
..........................CTTTTGGCTTTCTGTGCGCT.........................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................GCTATCGAGGAGTCCGAC.....................1811.001000000000000000000000000000000000000000000000000000000000001000
..........ATGAAGA-CTATTTGGCTTTT........................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
............................TTTGGCTTTCTGTGCGCTAGC---...................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................CTTTTGGCTTTCTGTGCGCTAGC---...................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AGTCCGACCGTGTGAATGG..........1911.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................GCTTCGGCCTATGCTATCGAGG.............................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CGAGGAGTCCGACCGTGTGAATGGC.........2511.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................GTCCGACCGTGTGAATGGC.........1911.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................GGAGTCCGACCGTGTGAATGGCGA.......2411.001000000000000000001000000000000000000000000000000000000000000000
......................TTGGCTTTTGGCTTTCTGTGCGCTA........................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................ATCGAGGAGTCCGACCGTGTGAATGGC.........2711.001000100000000000000000000000000000000000000000000000000000000000
..................CTATTTGGCTTTTGGCTTTCTGTGCGCC.........................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...............GA-CTATTTGGCTTTTGGCT....................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................AGTCCGACCGTGTGAATGGCGAGAA....2511.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CCGACCGTGTGAATGGCGAGA.....2111.001000000000000000010000000000000000000000000000000000000000000000
.............AAGA-CTATTTGGCTTTTGGCTT...................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................CT--------TAGCAATT---------ACTTTGAA--CT..........................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CTATCGAGGAGTCCGACCGTGTGAA.............2511.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TATGCTATCGAGGAGTCCGAC.....................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GTCCGACCGTGTGAATGGCGAGAAC...2511.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................GAGGAGTCCGACCGTGTGAATG...........2211.001000000000000000000000000000000000000000000000000000000000000010
.........................................................AATGTTAC--CAT-------------------------------TTTGTTGGA--------T--GAGAA-----T-C.................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CGGCCTATGCTATCGAGGAGTCC........................2311.001000000000000000000000000000001000000000000000000000000000000000
...............GA-CTATTTGGCTTTTGGC.....................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
...............GA-CTATTTGGCTTTTGGCTT...................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................GGAGTCCGACCGTGTGAATGGC.........2211.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................GTCCGACCGTGTGAATGGCG........2011.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................GAGGAGTCCGACCGTGTGAATGGCGA.......2611.001000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................GGCCTATGCTATCGAGGAGTCC........................2211.001000000000000000000000000000001000000000000000000000000000000000
..............AGA-CTATTTGGCTTTTGGCT....................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................GAGGAGTCCGACCGTGTGAATGGC.........2411.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................GGAGTCCGACCGTGTGAATGGCGAGA.....2611.001000000000000000100000000000000000000000000000000000000000000000
.........................GCTTTTGGCTTTCTGTGCGCT.........................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..........ATGAAGA-CTATTTGGCTTTTGGCT....................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
...................................................................................................................................................................................AGCTTCGGCCTATGCTATCGAGGAGTC.........................2711.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................GAGTCCGACCGTGTGAATGGC.........2111.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
---------TATGAAGA-CTATTTGGCTCTTGACTTTCTGTGCACTTGC---TGGTAATTTTCAT--TAA----------TA--------------CA--TGGGGTTCGC--------T--CAGCT-----C-GTT--------AACATATT---------CCTACAAT--TCCCATACAGCTTCGGTCTGCGCTATTCCTGAGTCCGAGCGCGAGAATGGAGAGAATGGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................GTCCGAGCGCGAGAATGGA.........1917.007000007
.......................................................................................................................................................................................................CTGAGTCCGAGCGCGAGAAT............2012.002000101
..................CTATTTGGCTCTTGACTTTCTGTGC............................................................................................................................................................................................2512.002100010
.........................................................................................................................................................................................................GAGTCCGAGCGCGAGAATGGA.........2112.002000002
.......................................................................................................................................................................................................CTGAGTCCGAGCGCGAGAATGGAGA.......2512.002000002
..........................................................................................................................................................................................GTCTGCGCTATTCCTGAGTCCGAGCGC..................2711.001100000
..................CTATTTGGCTCTTGACTTTCTGTG.............................................................................................................................................................................................2411.001100000
...............................................................................................................................................................................................................GAGCGCGAGAATGGAGAGA.....1911.001100000
.........................................................................................................................................................................................................GAGTCCGAGCGCGAGAATGGAGA.......2311.001000001
...........................................................................................................................................................................................................GTCCGAGCGCGAGAATGGAGA.......2111.001000100
..............................................................................................................................................................................................................CGAGCGCGAGAATGGAGAGAAT...2211.001000100
...............GA-CTATTTGGCTCTTGACTTTCTGTGC............................................................................................................................................................................................2711.001100000
..................CTATTTGGCTCTTGACTTTCTGT..............................................................................................................................................................................................2311.001100000
..................................................................................................................................................................................................TATTCCTGAGTCCGAGCGCGA................2111.001000100
.........................................................................................................................................................................................................GAGTCCGAGCGCGAGAATG...........1911.001100000
..........................CTCTTGACTTTCTGTGCACT.........................................................................................................................................................................................2011.001100000
..................CTATTTGGCTCTTGACTTT..................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................AGTCCGAGCGCGAGAATGGAGAGAAT...2611.001001000
...................................................................................................................................................................................................ATTCCTGAGTCCGAGCGCGAGA..............2211.001000001
..............................................................................................................................................................................................................CGAGCGCGAGAATGGAGAGAATGG.2411.001100000
..................................................................................................................................................................................................................CGCGAGAATGGAGAGAAT...1811.001100000
............................................................................................................................................................................................CTGCGCTATTCCTGAGTCCGAGCGC..................2511.001000100
...................................................................................................................................................................................................................GCGAGAATGGAGAGAATGGC2011.001000001
..........................................................................................................................................................................................GTCTGCGCTATTCCTGAGTCCGAGC....................2511.001000001
.................................................................................................................................................................................................................GCGCGAGAATGGAGAGAATGG.2111.001000001
droGri2
---------TATGAAGA-CTATTTTGCTTTTGGCATTCTGTGCGCTAGC---GGGTAAATACAAG--CATTATATACCTTAGAAT--------------------ATCAT--------G--ATATA-----T-ATT--------CTTGGAAC---------TGTAAAC----CATCGACAGCTTCGGCCTACGCTTTGGAGGAGTCGGAACGTGTGAATGGAGAGAACGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................CGGAACGTGTGAATGGAGAGAACGG.2511.00110

Generated: 05/18/2015 at 01:29 PM