ID:

dsi_16796

 Coordinate:

2l:6803377-6803526 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.4 -19.3 -19.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCGCCGCGAAATAAATACGTAAACTGAATTGTGTGTGCCAAAACGAAATGTAAGCGGTGGTCCGTTCGCTCCGTTAATAAGTGCGAAAATTACGAAAAATCTGTGTTTTCGTTCGGCGTTGGCAGTGAAATTGTGCGTGTGCACGTCTGGCATAATTTGCCAAAAATACTCGAGAAATATGTGTGCCAAATAAAAGCAAAATGGCATAAAGGCGAGCCAATGGCACTGCCGAAAAATCATTAATGCAAA
****************************************************************************************************......((((((.......((((((....((((((((.............)))))))))))))).......))))))............************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M023
head
 M024
male body		 GSM343915
embryo
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
..............................................AACTCTAAGCGGTGGTC........................................................................................................................................................................................... 17 2 10 4.50 45 45 0 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGTCCG......................................................................................................................................................................................... 19 2 2 2.00 4 3 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCTGTGTTTTCGTTCGGCGTT................................................................................................................................. 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTCGTCCGTT....................................................................................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TTCGTTCGGCGTTGGCAGG........................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................ACTCGAGAAATATGTGTGCCA............................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................CCAAATAAAAGCAAAATGGC............................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGTCCGATC...................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GTGTTTTCGTTCGGC.................................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGTCC.......................................................................................................................................................................................... 18 2 4 1.00 4 3 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................GAAATTGTGCGTGTGCACGTCTGGC.................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTTTCGTTCGGCGTTGGCAGT........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...............ATACGTAAACTGAATTGTGTG...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................TTTTCGTTCGGCGTTGGCAGTG.......................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................TTTCGTTCGGCGTTGGCAGTG.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................GCAGTGAAATTGTGCGTG.............................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................AACTCTAAGCGGTGGGCCG......................................................................................................................................................................................... 19 3 8 0.88 7 7 0 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGTACG......................................................................................................................................................................................... 19 3 7 0.57 4 4 0 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGACCG......................................................................................................................................................................................... 19 3 13 0.54 7 7 0 0 0 0 0 0 0 0 0 0 0
............................................................................TATAAGCGCAAAAATTACGAAAA....................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................AACTCTAAGCGGTGGTCCC......................................................................................................................................................................................... 19 3 10 0.50 5 3 0 0 0 0 0 0 0 0 0 0 2
..............................................AACTGTAAGCGGTGG............................................................................................................................................................................................. 15 1 11 0.36 4 4 0 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGTGCGT........................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AAATCTAAGCGGTGG............................................................................................................................................................................................. 15 1 13 0.23 3 3 0 0 0 0 0 0 0 0 0 0 0
.........................................AAACGAACTCTAAGCGGT............................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................AAGCGAACTCTAAGCGGTGG............................................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGGCC.......................................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCACTGCGGAAGGATCATTA....... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGTCTG......................................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AACTCTAAGCGGTGGTTCG......................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
.......CGAAATTAGGACGTAAACT................................................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................CTTGTGCGTGTACACGGCT..................................................................................................... 19 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................TTTGTGCGTGTGCACG........................................................................................................ 16 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................AAATCTAAGCGGTGGTTCA......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CGGCGGCGCTTTATTTATGCATTTGACTTAACACACACGGTTTTGCTTTACATTCGCCACCAGGCAAGCGAGGCAATTATTCACGCTTTTAATGCTTTTTAGACACAAAAGCAAGCCGCAACCGTCACTTTAACACGCACACGTGCAGACCGTATTAAACGGTTTTTATGAGCTCTTTATACACACGGTTTATTTTCGTTTTACCGTATTTCCGCTCGGTTACCGTGACGGCTTTTTAGTAATTACGTTT
*************************************************************......((((((.......((((((....((((((((.............)))))))))))))).......))))))............**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
...........................................................................................................................................CAGGTGCAGACCGGAT............................................................................................... 16 2 19 0.05 1 1 0
.....................................TGGTTTTGCTTTAGATTCGG................................................................................................................................................................................................. 20 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:6803327-6803576 + dsi_16796 GCC------GCCGCG----------------AAATAAATACGTAAACTGA----------ATT--G--TGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGGTCCG------TTCGCTCCG-----TTA---ATAAG-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA------------TGGCATAAAGGCGAGCCAATGGCACTGCC----GA--AAAATCATTAATGCAA----A
droSec2 scaffold_3:2567423-2567672 + GCC------GCCGCG----------------AAATAAATACGTAAACTGA----------ATT--G--TGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGGTCCG------TTCGCTCCG-----TTA---ATAAG-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA------------TGGCATAAAGGCGAGCCAATGGCACTGCC----GA--AAAATCATTAACGCAA----A
dm3 chr2L:7042463-7042712 + GCC------GCCGCG----------------AAATAAATACGTAAACTGA----------ATT--G--TGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGTTCCG------TTCGCTCCG-----TTA---ATAAG-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA------------TGGCATAAAGGCGAGCCAATGGCACTGCC----GA--AAAATCATTAACACAA----A
droEre2 scaffold_4929:15953198-15953475 + GCC------GCCGCG----------------AAATAAATACGTAAACCGA----------ATTGT--TTGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGGTCCGTTGGCGTTCGCCCCG-----TTA---ATAAA-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAATTGCGAAAAATCTGTGTGTT-TCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGACTGGCATAATT-TGCCAAAAATA--C-----TCGAAAAATATGT-------------GTGCC------AAA--GAAAAGCAAAA--AGGCACAAAATGGCAAAAAGGCGAGCCAGTGGCACTGCC----GA--AAAATCATTAACGCAA-----
droYak3 2L:5870661-5870913 - GCC------GCCGCG----------------AAATAAATACGTAAACTAA----------AGT--GTTTGTGTGCCAA------AA--------CC-GAAATGTAAGC---GGTGGTCCGTTCCCGTTCGCTCCG-----TTA---ATAAG-T-----GC--AAAAATTG---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCAATCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCACCGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA---------------------GGCGAGCCACTGGCACTGCC----GAACAAAATCATTAACGCAA----A
droEug1 scf7180000409463:169934-170200 + GCC------GCCGCG----------------AAATAAATACGTAAACTAAACCAAACCAAACC--G--AGTGTGCCAA------AT--------CGAAAAATGTAAGCGGCAGTGGTCAA----------CACTT--T--TTA---TGAAG-A-----GC--GAAAATAA---------------------------------------------------------GGAAAAA----------TCTGTGT--TT-CGCTCG--TTTGGCAGTGAAT--TTGTGCGTGTGT---GTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATCT-------------GTGTC------AGA--TAAAAGCAAAAGCAAGCAGCAAACAGCAAAA-AGCGTAGCAATGGCACTGCC----GA--AAAATCATTAACGCAA-----
droBia1 scf7180000302422:8690358-8690601 + GCCGTCGCCGCCGCG----------------AAATAATCACGTAAACTAA-----AGCCAATCGTG--TGTGTGCCAA------AA--------CC-AAAATGTAAG--GCGGTGGTTCG----------CTCTT--T--TTTGTAGCAAG-TGCA-AGC--A----------------------------------------------AGAAAA-----TATGTATCGAAAAA-------------------------------TTGGCAGTGAAA--TTGTGCGTG--------CTGGCACATTTATGCCAAAAATA--C-----TCGAGAAATGTGT------TATGAGTGCGCC------AAA--CAGAAGCAAAA--------------------AGCCGAGC-----GCACTGCC----GA--AAAATCATTAACGCAA----A
droTak1 scf7180000416008:310042-310268 + GCCGTC---GCCGCG----------------AAACAAATACGTAAACCAA-----AGCGAACC--G--TGTGTGCCAA------AA--------CG-AAAATGTAAG--GCGGTGGTCCG----------CTCTG--GTTTTA---ATAAG-TGCAAAGC--AAAAATAA---------------------------------------------------------CGAAAAA-------------------------------TTGGCAGTGAAA--TTGTGCGTGTGCA-TGGCTGGCATAATTTTGCCAAAAATA--C-----CCAAGAAATGTGTGTGTTATGTGTGTGGGCC------AGA----------------------------------------------GCACTGAC----GAA-AAAATCATTAACGCAA-----
droEle1 scf7180000490640:244651-244867 - --C------GCCGCG----------------AAACAAATACGAAAAC---------------------CGTGTGCCAA------AA--------AG-AAAATGTAAGC---GGTTGC-------------CTCTG--A--TTA---ATAAG-T-----GC--AAAAATAA---------------------------------------------------------CGAAAAA----------TCTGTGT--T---------CGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCGAAAATA--C-----TCGAGGAATATGT-------------GTGCC------AAA--TAAAAGCAAAA----------------------CCGAAGCAATGGCACTGCC----GA--AAAATCATTAACGCAA----A
droRho1 scf7180000779930:153406-153620 + --C------GCCGCG----------------AAACAAATACGAAATC---------------------CGTGTGCCAA------AA--------AG-AAAATGTAAGC---GGTCG-------------GCTCTG--T--TTA---ATAAG-T-----GC--AAAAATAA---------------------------------------------------------CTAAAAA----------TCTGTGT--T---------CGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-CGCCGAAAATA--C-----TCGAGGAATATG---------------TGCC------AAA--TAAAAGCAAAA---------------------ACCGAAGCAATGGCACTGCC-----A--AAAATCATTAACGCAA----A
droFic1 scf7180000454111:812218-812439 + GCC------GCCGCG----------------AAATAAATACGTAAAC---------------------TGTGTGCCAA------AA--------CG--AAATGTAAGC---GTTG-------------CGCTA-GTTT--TTA---ATAAG-T-----GC--AAAAATAA---------------------------------------------------------CGAAAAA----------CC-GCGT--TT--------GGTTGGCAGTGAAAA-TTGTGCGTGTGCA-CGTCTGGCATAATTTTGCCAAAAATA--C-----TCGAGAAATATGT------TGTGTGTGTGCC------AAA--TAAAAGCAAAA---------------------ACCGAA------GCACAGCC----GA--AAAATCATTAACG-AA----A
droKik1 scf7180000302468:546258-546501 + GTCGTC---GT-CCGTCGTCCGTCCCGTGATAAATAAATACGAAA-C---------------------CCAGTGCCAA------AAACACCATTCG-AAAATGTAAGC---GGT-------------TCGCCCCG--T--TTA---ATAAT-T-----GC--AGAAATAACCCCAAG---AC-----------------GGCGGCG---A-------------------GAAAA----------TGTGT---------------GTTGGCAGTGAAA--TTGTGCGTGTGCTGCGGCTGGCATAAT--TGCCAAAAATACAC-----GGGGCAAATATGT-------------GTGCCG---CCGAA--TAAGAGCG------------------------------------------GC----GA--AAAATCATTAACGCAACGCAG
droAna3 scaffold_12916:113496-113745 + GCC------GCGCCGTCGCCCCTC-------AAATAAATACGAAA-C---------------------CGTGTGCCAA------A---------CA-AAAATGTAAGC---GGCGCT-----------------G--C--TTA---GCCAT-T-----TC--AAAAACA-CACAAACTAGAT-----------------T--GG-GAAAAGAAA-------------AGCAAAA------------TGTGT--TT--------TGTTGGCAGTGAAA--TTGTGCGTGCGC---GCCTGGCATAAT--TGCCAAAAATATAC-----TC-AGAAATATGT-------------GTGCC------GAA--CGAAAGCAAAACCAA--------CGCC--AAAACCGAGCCACTGGCACC-------G---AAAATCATTAACGCAA----A
droBip1 scf7180000396554:2168122-2168374 - GCC------GCGCCGTTGCCCCTC-------AAATAAACGCGAAA-T---------------------TGTGTGCCAAACAAAAAA--------CA-AAAATGTAAGC---GGTCGC----------------TG--T--TTA---GCAAT-T-----TCCCAAAAACT---------AGAT-----------------C--GG-GAAAAGAAAAGCAAA-------AAAAAAA-TAC---AATTATGTGT--TT--------TGTTGGCATTGAAA--TTGTGCGTGCGC---GTGTGGCATAATT-CGCCAAAAATATACAGAAACCCAGAAATATGT-------------GTGCCGAAACCGAAACTG--------------------------------------AAAGCCACTG----------AAAATCATTAACGCAA----A
dp5 4_group1:3601260-3601505 - GGC------GCCGCGTTGTTCGTCTCA----AAA---TTG------------------------TGATTGTGTGCCAA------AA--------CG-AAAATGTAAGC---GGCGGCCTGC----------------T--TTA---ATAAATT-----AC--AAAAATAACACAAAA---ATACCCAGACACAAGTGCAAGTGGTG-AA--------------------------TGCAGAAAATATGTGTGTT---------TGTTGGCAGTGAAA--TTGTGCGTGCGCG-CG--TAAAATAAT--TGCCAAAAATACAC-----TAGAGAAATATGT-------------GTGCC------AAA---------------------------------------------GGCACAGCCAGGCGC--AAAATCATTAACGCAA----A
droPer2 scaffold_5:1611975-1612220 + GGC------GCCGCGTTGCTCGTCTCA----AAA---TTG------------------------TGATTGTGTGCCAA------AA--------CG-AAAATGTAAGC---GGCGGCCTGC----------------T--TTA---ATAAATT-----AC--AAAAATAACACAAAA---ATACCCAGACACAAGTGCAAGTGGTG-AA--------------------------TGCAGAAAATATGTGTGTT---------TGTTGGCAGTGAAA--TTGTGCGTGCGCG-CG--TAAAATAAT--TGCCAAAAATACAC-----TAGAGAAATATGT-------------GTGCC------AAA---------------------------------------------GGCACAGCCAGGCGC--AAAATCATTAACGCAA----A
droWil2 scf2_1100000004521:5118602-5118714 + G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT----------TCTATGT------------CGTTGGCAGTGAAAATTTGTGCGTTTGT---------------G-TGCCGAAAATA--A-----AAGA---AAATGT-------------GTGCC------AAA--TAATAGAAAAA------------AAAAATAA----------AT-------------AG--AAAATCATTAAAGCTTC---A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCC------GCCGCG----------------AAATAAATACGTAAACTGA----------ATT--G--TGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGGTCCG------TTCGCTCCG-----TTA---ATAAG-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA------------TGGCATAAAGGCGAGCCAATGGCACTGCC----GA--AAAATCATTAATGCAA----ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................TCTGTGT--TTTCGTTCGGCGTT.......................................................................................................................................................................................2112.00200000000000002000
..............................................................................................................................................................................................................................................................TTCGTTCGGCGTTGGCAGG.................................................................................................................................................................................1911.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................A--C-----TCGAGAAATATGT-------------GTGCC------A.....................................................................................2111.00100000000000100000
....................................................................................................................................................................................................................................................................................................................................................................CC------AAA--TAAAAGCAAAA------------TGGC......................................................2011.00100010000000000000
.......................................................................................................................................................................................................................................................GTGT--TTTCGTTCGGC..........................................................................................................................................................................................1511.00100000001000000000
.................................................................................................................................................................................................................................................................................GAAA--TTGTGCGTGTGCA-CGTCTGGC.....................................................................................................................................................2511.00100010000000000000
..........................................................................................................................................................................................................................................................T--TTTCGTTCGGCGTTGGCAGT.................................................................................................................................................................................2111.00100000000000010000
.....................................ATACGTAAACTGA----------ATT--G--TGTG..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
..........................................................................................................................................................................................................................................................T--TTTCGTTCGGCGTTGGCAGTG................................................................................................................................................................................2211.00100000001000000000
.............................................................................................................................................................................................................................................................TTTCGTTCGGCGTTGGCAGTG................................................................................................................................................................................2111.00110000000000000000
............................................................................................................................................................................................................................................................................GCAGTGAAA--TTGTGCGTG..................................................................................................................................................................1811.00100000100000000000
droSec2
GCC------GCCGCG----------------AAATAAATACGTAAACTGA----------ATT--G--TGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGGTCCG------TTCGCTCCG-----TTA---ATAAG-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA------------TGGCATAAAGGCGAGCCAATGGCACTGCC----GA--AAAATCATTAACGCAA----ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................AA------------TGGCATAAAGGCGAGCC.........................................1911.0011000
.................................................................................................................................................................................................................................................................GTTCGGCGTTGGCAGTGAA..............................................................................................................................................................................1911.0010100
.........................................................................GCCAA------AA--------CG--AAATGTAAGC---GG.................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................CGTTCGGCGTTGGCAGTGA...............................................................................................................................................................................1911.0010010
...................................................................................................................................................................................................................................................................................AA--TTGTGCGTGTGCA-CGTCTGGC.....................................................................................................................................................2311.0010010
dm3
GCC------GCCGCG----------------AAATAAATACGTAAACTGA----------ATT--G--TGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGTTCCG------TTCGCTCCG-----TTA---ATAAG-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA------------TGGCATAAAGGCGAGCCAATGGCACTGCC----GA--AAAATCATTAACACAA----ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................ATACGTAAACTGA----------ATT--G--TGTG..........................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
................................................................................................................................CGCTCCG-----TTA---ATAAG-T-----GC--GAA.............................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAATACGTAAACTGA----------ATT--G--TGTGTGCC......................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TTGGCAGTGAAA--TTGTGCGTG..................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................ATT--G--TGTGTGCCAA------AA--------CG--AA..............................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTAAACTGA----------ATT--G--TGTGTGCC......................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010
........................................CGTAAACTGA----------ATT--G--TGTGTG........................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000
......................................................................................................GTAAGC---GGTGTTCCG------TTCGCT..............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................ACTGA----------ATT--G--TGTGTGCCAA------AA--------C...................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AAA------------TGGCATAAAGGCGAGCCAATGGCAC.................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AA--------CG--AAATGTAAGC---GGTGTTCCG------TTCGC...............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GCGTGTGCA-CGTCTGGCATAATT-TGC...........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................GCA-CGTCTGGCATAATT-TGC...........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................GTGTTCCG------TTCGCTCCG-----TTA---................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................GCCAA------AA--------CG--AAATGTAAGC---GG.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AATA--C-----TCGAGAAATATGT-------------GTG..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CGGCGTTGGCAGTGAAA--TTGA.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGTGCGTGTGCA-CGTCTGGC.....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TCGGCGTTGGCAGTGAAA--TTGTGCGTG..................................................................................................................................................................2711.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................TA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAA............................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTAAACTGA----------ATT--G--TGTGTGC.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................GCAGTGAAA--TTGTGCGTGTG................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCG----------------AAATAAATACGTAAACTGA----------A.....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AACTGA----------ATT--G--TGTGTGCCAA------..............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TAAATACGTAAACTGA----------ATT--G--TGTGTGCC......................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AA--------CG--AAATGTAAGC---GGTGTTC............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................ATA--C-----TCGAGAAATATGT-------------GTGCC------......................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TACGTAAACTGA----------ATT--G--TGTGTGCCAA------A.............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................AA------AA--------CG--AAATGTAAGC---GGTG...............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GTGCCAA------AA--------CG--AAATGTAAGC---GG.................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................TGCA-CGTCTGGCATAATT-TGC...........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..C------GCCGCG----------------AAATAAATACG........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GTGT--TTTCGTTCGGCGTTG......................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................TT--G--TGTGTGCCAA------AA--------CG--AAA.............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AATGTAAGC---GGTGTTCCG------....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................TGCCAA------AA--------CG--AAATGTAAGC---G..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................TACGTAAACTGA----------ATT--G--TGTGT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................CGGCGTTGGCAGTGAAA--TTGT.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ACGTAAACTGA----------ATT--G--TGTGTG........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
....................................AATACGTAAACTGA----------ATT--G--..............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.................................................A----------ATT--G--TGTGTGCCAA------AA--------CG--AA..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GTGT--TTTCGTTCGGCGTTGGCAGT.................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AAG-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAA----------A.............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........CGCG----------------AAATAAATACGTAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATAAATACGTAAACTGA----------ATT--G--T.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CGTAAACTGA----------ATT--G--TGTGTGCCAA------..............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GTTCGGCGTTGGCAGTGAA..............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................AATACGTAAACTGA----------ATT--G--TGT...........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................GTGCCAA------AA--------CG--AAATGTAAGC---GGT................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................A--TTGTGCGTGTGCA-CGCTG........................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................A---ATAAG-T-----GC--GAAAATTA---------------------------------------------------------A..............................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
droEre2
GCC------GCCGCG----------------AAATAAATACGTAAACCGA----------ATTGT--TTGTGTGCCAA------AA--------CG--AAATGTAAGC---GGTGGTCCGTTGGCGTTCGCCCCG-----TTA---ATAAA-T-----GC--GAAAATTA---------------------------------------------------------CGAAAAATTGCGAAAAATCTGTGTGTT-TCGTTCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGACTGGCATAATT-TGCCAAAAATA--C-----TCGAAAAATATGT-------------GTGCC------AAA--GAAAAGCAAAA--AGGCACAAAATGGCAAAAAGGCGAGCCAGTGGCACTGCC----GA--AAAATCATTAACGCAA-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................ATGTAAGC---GGTGGTCCGTTGGC.....................................................................................................................................................................................................................................................................................................................................2212.0021000100
................................................................................................................................................................................................................................................AAAATCTGTGTGTT-TCGTTCGGC..........................................................................................................................................................................................2311.0010000100
..........................................................................................................GC---GGTGGTCCGTTGGCGTTCGCCCC............................................................................................................................................................................................................................................................................................................................2511.0010100000
..............................................................................................................................................................................................................................................GAAAAATCTGTGTGTT-TCGTTCGGC..........................................................................................................................................................................................2511.0010000010
............................................................................................................................................................................................................................................................................................................................................................................AAA--GAAAAGCAAAA--AGGCA...............................................................1911.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGGCGAGCCAGTGGCAC.................................2111.0010000100
.............................................................................................................................................................................................................................................................T-TCGTTCGGCGTTGGCAGTGAAA--TTGTG......................................................................................................................................................................2811.0010000100
...........................................AAACCGA----------ATTGT--TTGTGTGCCA.....................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
................................................GA----------ATTGT--TTGTGTGCCAA------AA--------CG--AA..............................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................GT--TTGTGTGCCAA------AA--------CG--AAATGTA.........................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................................................................................................................AA--TTGTGCGTGTGCA-CGACTGGC.....................................................................................................................................................2311.0010001000
...................................................................................................................................................................................................................................................ATCTGTGTGTT-TCGTTCGGCGTTGGCA...................................................................................................................................................................................2711.0011000000
.................................................................................................................................................................................................................................................AAATCTGTGTGTT-TCGTTCGGC..........................................................................................................................................................................................2211.0011000000
....................................................................................................................................................................................................................................GAAAAATTGCGAAAAATCTGTGT.......................................................................................................................................................................................................2311.0010000100
droYak3
GCC------GCCGCG----------------AAATAAATACGTAAACTAA----------AGT--GTTTGTGTGCCAA------AA--------CC-GAAATGTAAGC---GGTGGTCCGTTCCCGTTCGCTCCG-----TTA---ATAAG-T-----GC--AAAAATTG---------------------------------------------------------CGAAAAA----------TCTGTGT--TTTCAATCGGCGTTGGCAGTGAAA--TTGTGCGTGTGCACCGTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATGT-------------GTGCC------AAA--TAAAAGCAAAA---------------------GGCGAGCCACTGGCACTGCC----GAACAAAATCATTAACGCAA----ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................A--TTGTGCGTGTGCACCGTCTG.......................................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................GCAAAA---------------------GGCGAGCCACTGGCACT................................2311.00100010000000
........................................................................................................................................................................................................................................................................................................................AAAAATA--C-----TCGAGAAATATGT-------------.................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................ATATGT-------------GTGCC------AAA--TAAAAGCAAAA---------------------GGC..............................................2811.00101000000000
.................................ATAAATACGTAAACTAA----------AGT--GT...............................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................TGTGTGCCAA------AA--------CC-GAAATG...........................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................AA--TTGTGCGTGTGCACCGTCTGG......................................................................................................................................................2311.00100000010000
.....................................................................................................................................................................AATTG---------------------------------------------------------CGAAAAA----------TCTGTGT--T....................................................................................................................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................AATT-TGCCAAAAATA--C-----TCGAG......................................................................................................................2111.00101000000000
droEug1
GCC------GCCGCG----------------AAATAAATACGTAAACTAAACCAAACCAAACC--G--AGTGTGCCAA------AT--------CGAAAAATGTAAGCGGCAGTGGTCAA----------CACTT--T--TTA---TGAAG-A-----GC--GAAAATAA---------------------------------------------------------GGAAAAA----------TCTGTGT--TT-CGCTCG--TTTGGCAGTGAAT--TTGTGCGTGTGT---GTCTGGCATAATT-TGCCAAAAATA--C-----TCGAGAAATATCT-------------GTGTC------AGA--TAAAAGCAAAAGCAAGCAGCAAACAGCAAAA-AGCGTAGCAATGGCACTGCC----GA--AAAATCATTAACGCAA-----SizeHit CountTotal NormTotal
No Reads
droBia1
GCCGTCGCCGCCGCG----------------AAATAATCACGTAAACTAA-----AGCCAATCGTG--TGTGTGCCAA------AA--------CC-AAAATGTAAG--GCGGTGGTTCG----------CTCTT--T--TTTGTAGCAAG-TGCA-AGC--A----------------------------------------------AGAAAA-----TATGTATCGAAAAA-------------------------------TTGGCAGTGAAA--TTGTGCGTG--------CTGGCACATTTATGCCAAAAATA--C-----TCGAGAAATGTGT------TATGAGTGCGCC------AAA--CAGAAGCAAAA--------------------AGCCGAGC-----GCACTGCC----GA--AAAATCATTAACGCAA----ASizeHit CountTotal NormTotal
No Reads
droTak1
GCCGTC---GCCGCG----------------AAACAAATACGTAAACCAA-----AGCGAACC--G--TGTGTGCCAA------AA--------CG-AAAATGTAAG--GCGGTGGTCCG----------CTCTG--GTTTTA---ATAAG-TGCAAAGC--AAAAATAA---------------------------------------------------------CGAAAAA-------------------------------TTGGCAGTGAAA--TTGTGCGTGTGCA-TGGCTGGCATAATTTTGCCAAAAATA--C-----CCAAGAAATGTGTGTGTTATGTGTGTGGGCC------AGA----------------------------------------------GCACTGAC----GAA-AAAATCATTAACGCAA-----SizeHit CountTotal NormTotal
No Reads
droEle1
--C------GCCGCG----------------AAACAAATACGAAAAC---------------------CGTGTGCCAA------AA--------AG-AAAATGTAAGC---GGTTGC-------------CTCTG--A--TTA---ATAAG-T-----GC--AAAAATAA---------------------------------------------------------CGAAAAA----------TCTGTGT--T---------CGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-TGCCGAAAATA--C-----TCGAGGAATATGT-------------GTGCC------AAA--TAAAAGCAAAA----------------------CCGAAGCAATGGCACTGCC----GA--AAAATCATTAACGCAA----ASizeHit CountTotal NormTotal
No Reads
droRho1
--C------GCCGCG----------------AAACAAATACGAAATC---------------------CGTGTGCCAA------AA--------AG-AAAATGTAAGC---GGTCG-------------GCTCTG--T--TTA---ATAAG-T-----GC--AAAAATAA---------------------------------------------------------CTAAAAA----------TCTGTGT--T---------CGTTGGCAGTGAAA--TTGTGCGTGTGCA-CGTCTGGCATAATT-CGCCGAAAATA--C-----TCGAGGAATATG---------------TGCC------AAA--TAAAAGCAAAA---------------------ACCGAAGCAATGGCACTGCC-----A--AAAATCATTAACGCAA----ASizeHit CountTotal NormTotal
No Reads
droFic1
GCC------GCCGCG----------------AAATAAATACGTAAAC---------------------TGTGTGCCAA------AA--------CG--AAATGTAAGC---GTTG-------------CGCTA-GTTT--TTA---ATAAG-T-----GC--AAAAATAA---------------------------------------------------------CGAAAAA----------CC-GCGT--TT--------GGTTGGCAGTGAAAA-TTGTGCGTGTGCA-CGTCTGGCATAATTTTGCCAAAAATA--C-----TCGAGAAATATGT------TGTGTGTGTGCC------AAA--TAAAAGCAAAA---------------------ACCGAA------GCACAGCC----GA--AAAATCATTAACG-AA----ASizeHit CountTotal NormTotal
No Reads
droKik1
GTCGTC---GT-CCGTCGTCCGTCCCGTGATAAATAAATACGAAA-C---------------------CCAGTGCCAA------AAACACCATTCG-AAAATGTAAGC---GGT-------------TCGCCCCG--T--TTA---ATAAT-T-----GC--AGAAATAACCCCAAG---AC-----------------GGCGGCG---A-------------------GAAAA----------TGTGT---------------GTTGGCAGTGAAA--TTGTGCGTGTGCTGCGGCTGGCATAAT--TGCCAAAAATACAC-----GGGGCAAATATGT-------------GTGCCG---CCGAA--TAAGAGCG------------------------------------------GC----GA--AAAATCATTAACGCAACGCAGSizeHit CountTotal NormTotal
No Reads
droAna3
GCC------GCGCCGTCGCCCCTC-------AAATAAATACGAAA-C---------------------CGTGTGCCAA------A---------CA-AAAATGTAAGC---GGCGCT-----------------G--C--TTA---GCCAT-T-----TC--AAAAACA-CACAAACTAGAT-----------------T--GG-GAAAAGAAA-------------AGCAAAA------------TGTGT--TT--------TGTTGGCAGTGAAA--TTGTGCGTGCGC---GCCTGGCATAAT--TGCCAAAAATATAC-----TC-AGAAATATGT-------------GTGCC------GAA--CGAAAGCAAAACCAA--------CGCC--AAAACCGAGCCACTGGCACC-------G---AAAATCATTAACGCAA----ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................T--TT--------TGTTGGCAGTGAAA--TTGTGCGTG..................................................................................................................................................................2611.001000100
...........................................................................................................................................................................................................................................................................................................................................GAAATATGT-------------GTGCC------GAA--C................................................................................1811.001100000
....................................................................................................................................................................................................................................................................................A--TTGTGCGTGCGC---GCCTGGC.....................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................AGAAATATGT-------------GTGCC------GAA--CGAAAGCA.........................................................................2611.001100000
.............................................................................................................................................................................................................................................................................CAGTGAAA--TTGTGCGTGCGC---GCCTGGC.....................................................................................................................................................2711.001100000
.......................................................................................................................................................................................................................................................................TGTTGGCAGTGAAA--TTGTGCGTGCGC---............................................................................................................................................................2611.001010000
..........................................................................................................................................................................................................................................................................................................................................AGAAATATGT-------------GTGCC------GAA--C................................................................................1911.001010000
........................................................................................................................................................T-----TC--AAAAACA-CACAAACTAGAT-----------------T--GG-G....................................................................................................................................................................................................................................................2611.001010000
droBip1
GCC------GCGCCGTTGCCCCTC-------AAATAAACGCGAAA-T---------------------TGTGTGCCAAACAAAAAA--------CA-AAAATGTAAGC---GGTCGC----------------TG--T--TTA---GCAAT-T-----TCCCAAAAACT---------AGAT-----------------C--GG-GAAAAGAAAAGCAAA-------AAAAAAA-TAC---AATTATGTGT--TT--------TGTTGGCATTGAAA--TTGTGCGTGCGC---GTGTGGCATAATT-CGCCAAAAATATACAGAAACCCAGAAATATGT-------------GTGCCGAAACCGAAACTG--------------------------------------AAAGCCACTG----------AAAATCATTAACGCAA----ASizeHit CountTotal NormTotal
No Reads
dp5
GGC------GCCGCGTTGTTCGTCTCA----AAA---TTG------------------------TGATTGTGTGCCAA------AA--------CG-AAAATGTAAGC---GGCGGCCTGC----------------T--TTA---ATAAATT-----AC--AAAAATAACACAAAA---ATACCCAGACACAAGTGCAAGTGGTG-AA--------------------------TGCAGAAAATATGTGTGTT---------TGTTGGCAGTGAAA--TTGTGCGTGCGCG-CG--TAAAATAAT--TGCCAAAAATACAC-----TAGAGAAATATGT-------------GTGCC------AAA---------------------------------------------GGCACAGCCAGGCGC--AAAATCATTAACGCAA----ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................A----AAA---TTG------------------------TGATTGTGTGCCA.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................CTCA----AAA---TTG------------------------TGATTGTGTGCCAA------..............................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
................................................................................................................................................................................................................................................................................TGAAA--TTGTGCGTGCGCG-C............................................................................................................................................................1911.0010100000000
..........................A----AAA---TTG------------------------TGATTGTGTGCCAA------AA--------CG-AA...............................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..................................................................ATTGTGTGCCAA------AA--------CG-AA...............................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................GTCTCA----AAA---TTG------------------------TGATTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GGC------GCCGCGTTGCTCGTCTCA----AAA---TTG------------------------TGATTGTGTGCCAA------AA--------CG-AAAATGTAAGC---GGCGGCCTGC----------------T--TTA---ATAAATT-----AC--AAAAATAACACAAAA---ATACCCAGACACAAGTGCAAGTGGTG-AA--------------------------TGCAGAAAATATGTGTGTT---------TGTTGGCAGTGAAA--TTGTGCGTGCGCG-CG--TAAAATAAT--TGCCAAAAATACAC-----TAGAGAAATATGT-------------GTGCC------AAA---------------------------------------------GGCACAGCCAGGCGC--AAAATCATTAACGCAA----ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................CTCA----AAA---TTG------------------------TGATTGTGTGCC......................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
.......................CTCA----AAA---TTG------------------------TGATTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
....................CGTCTCA----AAA---TTG------------------------TGATTGTGTGCCA.....................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
...............................AAA---TTG------------------------TGATTGTGTGCC......................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droWil2
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT----------TCTATGT------------CGTTGGCAGTGAAAATTTGTGCGTTTGT---------------G-TGCCGAAAATA--A-----AAGA---AAATGT-------------GTGCC------AAA--TAATAGAAAAA------------AAAAATAA----------AT-------------AG--AAAATCATTAAAGCTTC---ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................AATTTGTGCGTTTGT---------------G-TGCCGA........................................................................................................................................2213.00300300
.................................................................................................................................................................................................................................................................................GAAAATTTGTGCGTTTGT---------------G-TGC...........................................................................................................................................2211.00100010
.....................................................................................................................................................................................................................................................................................ATTTGTGCGTTTGT---------------G-TGCCGAA.......................................................................................................................................2211.00100010
........................................................................................................................................................................................................................................AT----------TCTATGT------------CGTTGGCAGTGA...............................................................................................................................................................................2111.00110000
...............................................................................................................................................................................................................................................................................GTGAAAATTTGTGCGTTTGT---------------G-TGC...........................................................................................................................................2411.00100100
....................................................................................................................................................................................................................................................................................AATTTGTGCGTTTGT---------------G-TGCCGAA.......................................................................................................................................2311.00100100
.......................................................................................................................................................................................................................................................ATGT------------CGTTGGCAGTGAAAA............................................................................................................................................................................1911.00100100
.......................................................................................................................................................................................................................................................................................TTGTGCGTTTGT---------------G-TGCCGAAAATA--.................................................................................................................................2411.00100100
.......................................................................................................................................................................................................................................................................................................................................AAGA---AAATGT-------------GTGCC------AAA--TAA..............................................................................2111.00100001
..................................................................................................................................................................................................................................................................................AAAATTTGTGCGTTTGT---------------G-TGCCGA........................................................................................................................................2411.00100100
......................................................................................................................................................................................................................................................................................................................CCGAAAATA--A-----AAGA---AAATGT-------------GTGC.............................................................................................2411.00100010
.........................................................................................................................................................................................................................................................................................GTGCGTTTGT---------------G-TGCCGAAAATA--A-----A..........................................................................................................................2411.00100100
...............................................................................................................................................................................................................................................................................GTGAAAATTTGTGCGTTTGT---------------G-TGCC..........................................................................................................................................2511.00100100

Generated: 05/19/2015 at 12:41 AM