ID:

dsi_16786

 Coordinate:

3r:4311004-4311153 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAAGAAGTGGGAAAGAAGGGGGAAAATCGTACGACCTTCACCTCCCCAAGAATGTTTGCCGACTTTTGTTCAGTGAACTTATTGAAATGGTTACAAAAAATAAAAAGATGTCAAACTGCTCATATCAACACAAAGGAACGATGAAAGGCTCAAGCGCTGAGTTCTGGTCACTCGATTGATGTTCAATAATCTATTTACAGATTCCCAAAGAAGACGGCATATCAATGTCGTACAAAAGAAAATATTTTGC
**************************************************...(((((.((.(((((......((((((.........)))).)).......))))).)).)))))..........(((((((..((..(((....((((((.....))))))...)))..))..))).)))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................................................................................ATATCAATGTCGTACAAAAGAAAAT....... 25 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................TATTGAAATGGTTTCAAAGATTAAAAA................................................................................................................................................ 27 3 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................TATCAATGTCGTACAAAATAA.......... 21 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................AAGATTCCCAAAGAAGACGGC................................ 21 1 1 1.00 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................CAAAAGATTCCCAAAGAAGACGGC................................ 24 3 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GATTCCCAAAGAAGACGGCA............................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................TATTGAAGTGGTTTCAAAAA....................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 1 0
.......................................................................................TGGTTACAATAAGTAAAA................................................................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 1

Anti-sense strand reads

TTTCTTCACCCTTTCTTCCCCCTTTTAGCATGCTGGAAGTGGAGGGGTTCTTACAAACGGCTGAAAACAAGTCACTTGAATAACTTTACCAATGTTTTTTATTTTTCTACAGTTTGACGAGTATAGTTGTGTTTCCTTGCTACTTTCCGAGTTCGCGACTCAAGACCAGTGAGCTAACTACAAGTTATTAGATAAATGTCTAAGGGTTTCTTCTGCCGTATAGTTACAGCATGTTTTCTTTTATAAAACG
**************************************************...(((((.((.(((((......((((((.........)))).)).......))))).)).)))))..........(((((((..((..(((....((((((.....))))))...)))..))..))).)))).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
...................................................................................................................................TTTCCTTGCTACTCTC....................................................................................................... 16 1 4 1.50 6 6 0 0 0 0
.............................ATGTTGAAAGTTGAGGGGTTCT....................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
....................................................................................................................................TTCCTTGCTACTCTC....................................................................................................... 15 1 7 0.71 5 5 0 0 0 0
..........................................................................................................................ATAGTTCTGTTTCCTTGGT............................................................................................................. 19 2 5 0.20 1 0 1 0 0 0
......................................................................................................................................................................................................................GCCGGATAGTTGCAGCATT................. 19 3 6 0.17 1 0 1 0 0 0
...................................................................CAAGTCACCTGAATA........................................................................................................................................................................ 15 1 7 0.14 1 1 0 0 0 0
.............................ATGCTTGAAGTGGAG.............................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 1 0 0
.......................................................................................................................................................................................................CTCAGGGTTTGTTCTGGCGT............................... 20 3 8 0.13 1 0 0 0 1 0
................GCCCCCGTTTGGCATGCTG....................................................................................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0
.......................................................................................................................................................................................................................CCGGATAGTTGCAGCA................... 16 2 20 0.10 2 0 2 0 0 0
....................................................................................................................................TTCCTTGCTACTTCC....................................................................................................... 15 1 12 0.08 1 1 0 0 0 0
..............................TGCTGGAAGTTAAGGGG........................................................................................................................................................................................................... 17 2 16 0.06 1 0 1 0 0 0
..................................GTAAGTGGTGAGGTTCTTA..................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................................................GGCCGGATAGTTGCAGCA................... 18 3 20 0.05 1 0 1 0 0 0
..........................................AGGGGTCCTTAAAAACG............................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0
......................TGTTAGGATTCTGGAAGT.................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1
...................................................................................................................................TTTCCTTGCTACTCTCA...................................................................................................... 17 2 20 0.05 1 1 0 0 0 0

Generated: 04/24/2015 at 01:22 AM