ID:

dsi_16762

Coordinate:

2r:5525546-5525695 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(CA)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

CAGGCGGCAATCCGCTGGCGACGCTAACATGGTACAAAAACGACAAAAGGGTGAGTGCACAAATTTCCTTTTTTCCCGTCCTTTGTTTGCATTTTCCGCAGAAAACTCAAACACACACTCGCACACACACACACAATTACATAAACAGTCACACACATGCACACACTGAACAAAGAGCGAGCGACAGGGAGAGAGAGCACTATCAACGGCAGGCAGCAAACATCCGCAAAACAATAATGGCGCTTTTGTT ************************************************....((((.........(((((((((.(((...((((((..(((((....)))))..))))))....(((((......................................................))))).))).))))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs
.....GGCAATCCGCTGGCGACGCTAACATG...........................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
........................................................................................................................................................................................CATGGAGGTAGAGCACTAT...............................................	19	3	19	0.89	17	14	0	3	0
.........ATCCGCTGGCGACGCAAAAA.............................................................................................................................................................................................................................	20	2	2	0.50	1	0	1	0	0
.........................................................................................................................................................................................ATGGAGGTAGAGCACTAT...............................................	18	3	20	0.35	7	6	0	0	1
........................................................................................................................................................................................CATGGAGGGAGAGCACTATT..............................................	20	3	4	0.25	1	1	0	0	0
........................................................................................................................................................................................CATGGAGGGAGAGCACTA................................................	18	2	4	0.25	1	1	0	0	0
.........................................................................................................................................................................................ATGGAGGTAGAGCACTATC..............................................	19	3	10	0.20	2	2	0	0	0
.......................................................................................................................................................................................TCATGGAGGGAGAGCACTA................................................	19	3	13	0.08	1	1	0	0	0

Anti-sense strand reads

GTCCGCCGTTAGGCGACCGCTGCGATTGTACCATGTTTTTGCTGTTTTCCCACTCACGTGTTTAAAGGAAAAAAGGGCAGGAAACAAACGTAAAAGGCGTCTTTTGAGTTTGTGTGTGAGCGTGTGTGTGTGTGTTAATGTATTTGTCAGTGTGTGTACGTGTGTGACTTGTTTCTCGCTCGCTGTCCCTCTCTCTCGTGATAGTTGCCGTCCGTCGTTTGTAGGCGTTTTGTTATTACCGCGAAAACAA ************************************************....((((.........(((((((((.(((...((((((..(((((....)))))..))))))....(((((......................................................))))).))).))))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
.......................................................................................................................................GAATGTATTTGTAAGTTTGTGT.............................................................................................	22	3	5	0.20	1	1	0
..........................................................................AGGCAGGACACACACGTAAAA...........................................................................................................................................................	21	3	8	0.13	1	0	1
.................................................................................AAACGAACGTAAAAGCCGT......................................................................................................................................................	19	2	15	0.07	1	1	0
.......................................................................................................................................................................................................................................GCCATTACCGCGAAAA...	16	2	20	0.05	1	1	0
.................................................................................................................................................................................................TCTCGTGATAGTTGA..........................................	15	1	20	0.05	1	1	0
........................................................................................................................................................TGTGTACGTCTGGGACT.................................................................................	17	2	20	0.05	1	1	0
.................................................................................................................GTGTGAGCGTGTGTGTGTG......................................................................................................................	19	0	20	0.05	1	1	0
.......................................................................................................TTGAGTTTGTGTCTGA...................................................................................................................................	16	1	20	0.05	1	1	0

Generated: 04/23/2015 at 03:49 PM