ID:

dsi_16752

 Coordinate:

2r:11521226-11521375 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.0 -5.6 -5.3

Flybase annnotation

three_prime_UTR [2r_11519591_11521373_+]; exon [2r_11519414_11521373_+]

No Repeatable elements found

Sense Strand Reads

######################################################################################################################################################################################################----------------------------------------------------
AACACGAAATGTGCTTTTGGTGCTATTATTGTTACCGTAACTGTATGTGCATTATTGAAGAACACACACACACACACATACTGCATACATACGAATCTAGCTAACTTAAGCAAGCGCACACATTTTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTGAAATACAACATTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCTTGTCCAGCCGCCGAAAGGGCCAAGTACAAAAACCA
***************************************************................................................(((..((((((((((.(((.......)))........)))).))))))))).........******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
...................................................................................................................................TTCAATTTGATTTAAGAGCGTTACCACA........................................................................................... 28 0 1 3.00 3 1 0 0 0 2 0 0 0 0
..............................GTTACCGTAACTGTATGTGC........................................................................................................................................................................................................ 20 0 1 3.00 3 0 0 0 0 0 3 0 0 0
...................................................TTATTGAAGAACACACACACACACACA............................................................................................................................................................................ 27 0 1 2.00 2 1 0 1 0 0 0 0 0 0
.....GAAATGTGCTTTTGGTGCTAT................................................................................................................................................................................................................................ 21 0 20 1.35 27 0 0 0 0 0 0 27 0 0
...............................................TGCATTATTGAAGAACACACA...................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TGAAATACAACATTCACTTTGTCATT........................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................ACTGTATGTGCATTATTGAAGAACACACA...................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................TTCAATTTGATTTAAGAGCGTTACCACAA.......................................................................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................TGTATGTGCATTATTGAAGAACACACA...................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................TGCGTACATACGAATCTAGCTAACT................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................TCAATTTGATTTAAGAGCGTTACCACA........................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................CACACACATACTGCATATATACGAATCT........................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................TTGAAGAACACACACACACACA.............................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................TACGAATCTAGCTAACTTAAGCAAG........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TTTGATTTAAGAGCGTTACCACAAACC....................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................AATTTGATTTAAGAGCGTTACCACAAA......................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................ACTGTATGTGCATTATTGAAGAACACA........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TACCACAAATCACTGAAATACAACATT....................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................TGCATACATACGAATCTAGCTAACT................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................TGTGCATTATTGAAGAACACACA...................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................TTGAAGAACACACACACACAC............................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................................AACTGTATGTGCATTATTGAAGAACA.......................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TGATTTAAGAGCGTTACCACAAACCACT.................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................ACACACACACACACATACTGC...................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..........................................................................CACATACTGCATACATACGAATCT........................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................GTTAACGTAACTGAATGTGGA....................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0
....................TGCTATTATTGTTACCGTAACTGTATG........................................................................................................................................................................................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................GCTATTATTGTTACCGTAACTGTATG........................................................................................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 0 0 1 0
....................TGCTATTATTGTTACCGTAACTGTA............................................................................................................................................................................................................. 25 0 5 0.40 2 0 0 0 2 0 0 0 0 0
.........TGTGCTTTTGGTGCTATTATTGTTAC....................................................................................................................................................................................................................... 26 0 20 0.30 6 0 4 1 1 0 0 0 0 0
...........TGCTTTTGGTGCTATTATTGTTACCGT.................................................................................................................................................................................................................... 27 0 7 0.29 2 0 1 0 1 0 0 0 0 0
......................CTATTATTGTTACCGTAACTGT.............................................................................................................................................................................................................. 22 0 5 0.20 1 0 1 0 0 0 0 0 0 0
................TTGGTGCTATTATTGTTACCGTAACTGTA............................................................................................................................................................................................................. 29 0 5 0.20 1 0 0 0 0 0 0 0 1 0
..................GGTGCTATTATTGTTACCGTAACTGTA............................................................................................................................................................................................................. 27 0 5 0.20 1 1 0 0 0 0 0 0 0 0
..................GGTGCTATTATTGTTACCGTATATATA............................................................................................................................................................................................................. 27 3 6 0.17 1 1 0 0 0 0 0 0 0 0
....................................................................................ATCCATAGGAATCTAGCTT................................................................................................................................................... 19 3 12 0.17 2 0 0 0 0 0 0 0 0 2
..................GGTGCTATTATTGTTACCGTAACTG............................................................................................................................................................................................................... 25 0 6 0.17 1 0 1 0 0 0 0 0 0 0
............GCTTTTGGTGCTATTATTGTTACCGT.................................................................................................................................................................................................................... 26 0 7 0.14 1 0 1 0 0 0 0 0 0 0
.....................GCTATTATTGTTACCGTA................................................................................................................................................................................................................... 18 0 7 0.14 1 0 0 0 0 0 0 0 1 0
.........TGTGCTTTTGGTGCTATTATTGTTACCGTA................................................................................................................................................................................................................... 30 0 7 0.14 1 0 0 0 0 0 0 0 1 0
..............TTTTGGTGCTATTATTGTTACCGTA................................................................................................................................................................................................................... 25 0 7 0.14 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CGAAAGGGCCTCGTACAAC..... 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0
.........TGTGCTTTTGGTGCTATTATTGTT......................................................................................................................................................................................................................... 24 0 20 0.10 2 0 1 0 1 0 0 0 0 0
...........................ATTGATACCGTAACT................................................................................................................................................................................................................ 15 1 13 0.08 1 0 0 0 0 1 0 0 0 0
..............................................GTGCATTTTTGAAGAA............................................................................................................................................................................................ 16 1 14 0.07 1 0 1 0 0 0 0 0 0 0
...................................................................................AATCCATAGGAATCTAGCT.................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 1
........CTGTGCTTTTGGTGCTATTATT............................................................................................................................................................................................................................ 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.........TGTGCTTTTGGTGCTATTATTGT.......................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0
..CACGAAATGTGCTTTTGGTGCTAT................................................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 1 0
...........TGCTTTTGGTGCTATTATTG........................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0
..CACGAAATGTGCTTTTGGTGCTATTAT............................................................................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 1 0
..........GTGCTTTTGGTGCTATTATTGTTACCG..................................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0
.........TGTGCTTTTGTTGCTATTATTGTTACA...................................................................................................................................................................................................................... 27 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTGTGCTTTACACGAAAACCACGATAATAACAATGGCATTGACATACACGTAATAACTTCTTGTGTGTGTGTGTGTGTATGACGTATGTATGCTTAGATCGATTGAATTCGTTCGCGTGTGTAAAACGGTTAAGTTAAACTAAATTCTCGCAATGGTGTTTAGTGACTTTATGTTGTAAGTGAAACAGTAAAGCGGTATCAAAAACTAATTTAGAACAGGTCGGCGGCTTTCCCGGTTCATGTTTTTGGT
*******************************************************************************************................................................(((..((((((((((.(((.......)))........)))).))))))))).........*************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M025
embryo
 SRR902008
ovaries
 GSM343915
embryo
....GCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 24 0 20 2.70 54 54 0 0 0 0 0 0 0 0 0 0
...TGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 25 0 20 2.05 41 0 13 24 2 2 0 0 0 0 0 0
..GTGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 26 0 20 1.95 39 0 38 0 0 0 1 0 0 0 0 0
TTGTGCTTTACACGAAAACCACGAT................................................................................................................................................................................................................................. 25 0 20 1.60 32 0 8 0 24 0 0 0 0 0 0 0
.........ACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 19 0 20 1.45 29 29 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGCCGTATCAAATACCAATT....................................... 20 3 10 0.70 7 0 0 1 0 0 4 0 2 0 0 0
.TGTGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 27 0 20 0.40 8 0 0 7 0 0 0 1 0 0 0 0
TTGTGCTTTACACGAAAACCACGATAA............................................................................................................................................................................................................................... 27 0 20 0.25 5 0 4 1 0 0 0 0 0 0 0 0
..GTGCTTTACACGAAAACCACGATA................................................................................................................................................................................................................................ 24 0 20 0.25 5 0 0 0 4 0 1 0 0 0 0 0
TTGTGCTTTACACGAAAACCACGATAATAAC........................................................................................................................................................................................................................... 31 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0
....GCTTTACACGAAAACCACG................................................................................................................................................................................................................................... 19 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0
..........................................................................................................................................................................ATGTTGGGAGTGAAACA............................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
ATGTGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 28 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGGCGGCGGCGTTCCCGTTT............ 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
TTGTGCTTTACACGAAAA........................................................................................................................................................................................................................................ 18 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0
...CGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 25 1 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0
TTGTGCTTTACACGAAAACCACGATAGT.............................................................................................................................................................................................................................. 28 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTGCTTAGTTACTCTATGT............................................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
.TGTGCTTTACACGAAAACCACGATA................................................................................................................................................................................................................................ 25 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0
..........................................................TCTTGTGTGTGTGTGTGTG............................................................................................................................................................................. 19 0 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...TGCTTTACACGAAAACCACGATAATAAC........................................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
TTGCGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
....GCTTTACACGAAAACCACGATAA............................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.....CTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.......TTACACGAAAACCACGATAATAAC........................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..CTGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
TTGTGCTTTACACCAAAACCACGATAAT.............................................................................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..GTGCTTTACACGAAAACCACTATA................................................................................................................................................................................................................................ 24 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
...TGCTTTACACGAAAACCA..................................................................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
TTGTGGTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..GTTCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0
TTGTGCTGTACACGAAAACCAGGATAAT.............................................................................................................................................................................................................................. 28 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
TTGTGCTTTACACGAAAACCGCGATAAT.............................................................................................................................................................................................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
TTGTGCTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
TTGTGCTTTACACGAAAAACACGATAAT.............................................................................................................................................................................................................................. 28 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..GTGTTTTACACGAAAACCACGATAAT.............................................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
TTGTGCTTTACACGAAGACCACGAT................................................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
TTGTGCTTTACATGAAAACCACGATAA............................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
TTGTGCTTTACACGAAAACCACTATA................................................................................................................................................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11521176-11521425 + dsi_16752 AACACGAAATGTGCTTTTGGTGCTATTATTGTTACCGTAACTGTATGTGCATTA------------------------------------------TTGAAGAACACAC-----------ACACA-----------------CA--C------------ACATACTGCATACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACATTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-GTCCA-GCCGCCG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCA
droSec2 scaffold_1:8340922-8341128 + -------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------ACACA-----------------CA--C--------------ATACTGCATACATACGAATCTAGCTAACTTAAGCAAAGCG--CACACATTTTTGCCAATTCAATTTGATTTAAGAGCGTTGCCACAAATCACTG-AAATACAACATTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-GTCCA-GCCGCCG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCA
dm3 chr2R:10827644-10827859 + --------------------------------------------ATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACACACACA--AACATACTGCATAAATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACATTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-C-ATCCA-GCCGCCG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCA
droEre2 scaffold_4845:15025461-15025663 - -------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--C--------------ATAC----TACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-AGCCA-GCCACCG-------A-AATG------------------------------GCCAAGTACAAA------------------------A---AAACCA
droYak3 2R:10757919-10758119 + -------------------------------------------TATGTGCATTA------------------------------------------TTGAAAAACACAC-----------GCCCA-----------------CA--C--------------ATAC----TACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-AGCCA-GCCGCTG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCA
droEug1 scf7180000409462:327112-327337 - -------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCC---CACAACTCACACACACACAC--------A--CA----C---ATACATACGAATCTAGCTAACTTAAGCA-AGCGCACACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------AAAAGG------------------------------GCCAAGAACAAA------------------------AAAGAAACCA
droBia1 scf7180000302292:961987-962182 + -------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--C--------------A--C---ACACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCG-----------------------------------------------GCCAAGAACCAA------------------------CAAAAAGCCA
droTak1 scf7180000415260:87241-87438 - -------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--C---------------------ACACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------A-AAGG------------------------------GCCAAGAACAAA------------------------A-----ACCA
droEle1 scf7180000491214:3666623-3666846 + -------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACACAC---------GCCCAAACAC-ACTCACAATCACACAC--------A--CCCATAC-----GAATACGAATGTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------A-AAGA------------------------------GCATAGAACAAA------------------------A-----ACCA
droRho1 scf7180000778457:14584-14795 + -------------------------------------------TATGTGCTTAA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACACATACACACA----C---TTTCATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------A-AAGG------------------------------GCCAAGAACAAA------------------------A-----ACCA
droFic1 scf7180000453809:528465-528694 + -------------------------------------------TATGTGCATTA------------------------------------------TCGAATTACACAC-----------ACCCAAACAC-ACTCACACTCACACAC--------A--------C---ACACATACGAATCTAGCTAACTTAAGCG-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCTACCA-------AAAAGG------------------------------GAAAAGAACAAAAACAAA------------------AAAGAAACCA
droKik1 scf7180000302367:306861-307075 - -------------------------------------------TGTATAT-TTATTCATAACGTTTATATAGTACATAGGCATATTACATACATTATCGAGGAACAAAA-----------GAG-----------------------------------------------------------AG-----CTAAGCA---CA--CACACATT-TTGCCAATTCAATCTGATTTAAGAGCGTTACAACAAATCACTGGAAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCTCTAGTCTA-A----------------GG------------------------------------GTACAAAAACAGT----------------AACGAGAAACCA
droAna3 scaffold_13266:2496223-2496431 - -------------------------------------------AACACTC-TCAGACACAACA----------------------------------------------------------------------------TTAAACAC--------A--AA---------CATTTAGCAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTTCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCCGTATTCCAAGCCGCCA-------A-AAGT---------GCCCAA---CCACTG------ACCAAGAACAAA------------------------A-----A-AA
droBip1 scf7180000396759:1551145-1551370 - -------------------------------------------T----GCATTA------------------------------------------TTC------ACACACCCAACACACTCTTA-----------------CA--C------ACA--AC---------CATTTACCAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCG-T-GTCCATCCCGCCA-------A-GAGAGTGGCTAGTGGCCAGTGTCCAGTG------GCTAAGAACAAA------------------------A-----A--A
dp5 3:13315671-13315866 + -------------------------------------------C---------------------------------------------------------------AC-----------ACACA-----------------CA--C--------------ATAC---ATGCATACAAATCTAGCTAACTTAAGCC-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTT-TTGATTAAATCT-T-ATCGA-GTCGCCGGCTGACAA-CAGA---------GCCGG----------AAAAGA-CCAAGAACACA------------------------------ACCA
droPer2 scaffold_2:8306341-8306534 - -------------------------------------------C----------------------------------------------------------------------------ACACA-----------------CA--C--------------ATAC---ATGCATAAAAATCTAGCTAACTTAAGCC-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTT-TTGATTAAATCT-T-ATCGA-GCCGCCGGCAGACAA-CAGA---------GCCGG----------AAAAGA-CCAAGAACACA------------------------------ACCA
droWil2 scf2_1100000004513:2924527-2924711 - -------------------------------------------A-CGCACACTT-------------------------------------------------------------------CCCA-----------------CA--CACACACACA---------------------------------------C-ACCA--CACATATT-TTGCAAATTCAATTTTGTTTAAGAGAGAAATAAAA----------ATAATAACTTTCACTTTGTCATATCGCTTTAGTT-TAGTTTTTCTCT-T-GTTTA-TCCATTTCC-------CAAATTT---------------------------GTATCTATCATC---TGAATCCCCTCCCCCCAACCCCATGTACCCT
droGri2 scaffold_15245:2886143-2886264 + -------------------------------------------GTTA-ACATTT-CTATAT-CT--------------------------------TTATTAAACATAC-----------ATCCA-----------------TA--C--------------ATAC---ATACACACAAGTACATCTAGAATAAG---GGCG--CACATTTT-TCGTAAATGCAATTTGGTTTAAGAACGCTACAAAAAATCAC------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACACGAAATGTGCTTTTGGTGCTATTATTGTTACCGTAACTGTATGTGCATTA------------------------------------------TTGAAGAACACAC-----------ACACA-----------------CA--C------------ACATACTGCATACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACATTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-GTCCA-GCCGCCG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................TTCAATTTGATTTAAGAGCGTTACCACA..................................................................................................................................................................2813.00300000001020000000
..............................GTTACCGTAACTGTATGTGC.......................................................................................................................................................................................................................................................................................................................................................................2013.00300300000000000000
...................................................TTA------------------------------------------TTGAAGAACACAC-----------ACACA-----------------CA--C------------ACA.......................................................................................................................................................................................................................................................2712.00200010001000000000
.....GAAATGTGCTTTTGGTGCTAT...............................................................................................................................................................................................................................................................................................................................................................................................21201.3527000002700000000000
...............................................TGCATTA------------------------------------------TTGAAGAACACAC-----------A................................................................................................................................................................................................................................................................................................2111.00100000000001000000
.............................................................................................................................................................................................................................................................TG-AAATACAACATTCACTTTGTCATT.................................................................................................................................2611.00100000001000000000
.......................................ACTGTATGTGCATTA------------------------------------------TTGAAGAACACAC-----------A................................................................................................................................................................................................................................................................................................2911.00100010000000000000
...........................................................................................................................................................................................................................TTCAATTTGATTTAAGAGCGTTACCACAA.................................................................................................................................................................2911.00100000000100000000
.........................................TGTATGTGCATTA------------------------------------------TTGAAGAACACAC-----------A................................................................................................................................................................................................................................................................................................2711.00100000000001000000
............................................................................................................................................................................................................................TCAATTTGATTTAAGAGCGTTACCACA..................................................................................................................................................................2711.00100000001000000000
................................................................................................TTGAAGAACACAC-----------ACACA-----------------CA--C------------A.........................................................................................................................................................................................................................................................2211.00100000001000000000
.............................................................................................................................................................................TACGAATCTAGCTAACTTAAGCA-AG..................................................................................................................................................................................................................2511.00100000001000000000
..............................................................................................................................................................................................................................AATTTGATTTAAGAGCGTTACCACAAA................................................................................................................................................................2711.00100000000001000000
.......................................ACTGTATGTGCATTA------------------------------------------TTGAAGAACACA.............................................................................................................................................................................................................................................................................................................2711.00100010000000000000
................................................................................................................................................................................................................................................TACCACAAATCACTG-AAATACAACATT.............................................................................................................................................2711.00100000000100000000
.....................................................................................................................................................................TGCATACATACGAATCTAGCTAACT...........................................................................................................................................................................................................................2511.00100000000001000000
.............................................TGTGCATTA------------------------------------------TTGAAGAACACAC-----------A................................................................................................................................................................................................................................................................................................2311.00100000000001000000
................................................................................................TTGAAGAACACAC-----------ACACA-----------------CA--C------------..........................................................................................................................................................................................................................................................2111.00100000000010000000
......................................AACTGTATGTGCATTA------------------------------------------TTGAAGAACA...............................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.........................................................................................................ACAC-----------ACACA-----------------CA--C------------ACATACTGC.................................................................................................................................................................................................................................................2111.00100000100000000000
..................................................................................................................................................C------------ACATACTGCATACATACGAATCT...................................................................................................................................................................................................................................2411.00100000001000000000
....................TGCTATTATTGTTACCGTAACTGTATG..........................................................................................................................................................................................................................................................................................................................................................................2720.50100000000100000000
.....................GCTATTATTGTTACCGTAACTGTATG..........................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000000000
....................TGCTATTATTGTTACCGTAACTGTA............................................................................................................................................................................................................................................................................................................................................................................2550.40200000000200000000
.........TGTGCTTTTGGTGCTATTATTGTTAC......................................................................................................................................................................................................................................................................................................................................................................................26200.30600010000104000000
...........TGCTTTTGGTGCTATTATTGTTACCGT...................................................................................................................................................................................................................................................................................................................................................................................2770.29200000000101000000
......................CTATTATTGTTACCGTAACTGT.............................................................................................................................................................................................................................................................................................................................................................................2250.20100000000001000000
................TTGGTGCTATTATTGTTACCGTAACTGTA............................................................................................................................................................................................................................................................................................................................................................................2950.20100000010000000000
..................GGTGCTATTATTGTTACCGTAACTGTA............................................................................................................................................................................................................................................................................................................................................................................2750.20100000001000000000
..................GGTGCTATTATTGTTACCGTAACTG..............................................................................................................................................................................................................................................................................................................................................................................2560.17100000000001000000
............GCTTTTGGTGCTATTATTGTTACCGT...................................................................................................................................................................................................................................................................................................................................................................................2670.14100000000001000000
.....................GCTATTATTGTTACCGTA..................................................................................................................................................................................................................................................................................................................................................................................1870.14100000010000000000
.........TGTGCTTTTGGTGCTATTATTGTTACCGTA..................................................................................................................................................................................................................................................................................................................................................................................3070.14100000010000000000
..............TTTTGGTGCTATTATTGTTACCGTA..................................................................................................................................................................................................................................................................................................................................................................................2570.14100000000001000000
.........TGTGCTTTTGGTGCTATTATTGTT........................................................................................................................................................................................................................................................................................................................................................................................24200.10200000000101000000
.........TGTGCTTTTGGTGCTATTATTGT.........................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000000000
..CACGAAATGTGCTTTTGGTGCTAT...............................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000000000
...........TGCTTTTGGTGCTATTATTG..........................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000100000000
..CACGAAATGTGCTTTTGGTGCTATTAT............................................................................................................................................................................................................................................................................................................................................................................................27200.05100000010000000000
..........GTGCTTTTGGTGCTATTATTGTTACCG....................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000100000000
droSec2
-------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------ACACA-----------------CA--C--------------ATACTGCATACATACGAATCTAGCTAACTTAAGCAAAGCG--CACACATTTTTGCCAATTCAATTTGATTTAAGAGCGTTGCCACAAATCACTG-AAATACAACATTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-GTCCA-GCCGCCG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
--------------------------------------------ATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACACACACA--AACATACTGCATAAATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACATTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-C-ATCCA-GCCGCCG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................TTTAAGAGCGTTACCACAAATCACT...........................................................................................................................................................25118.00180000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000001100101000000000000000000000000000000000000000000000000000000000000000000000002030000001100000000000000000300000
......................................................................................................................................................................................................................................TTAAGAGCGTTACCACAAATCACT...........................................................................................................................................................2418.0080000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100100000
.......................................................................................................................................................................................................................................TAAGAGCGTTACCACAAATCACTG-AAA......................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................TCAATTTGATTTAAGAGCGTTACCACA..................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................TTCAATTTGATTTAAGAGCGTTACCACA..................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000
......................................................................................................................................................................................................................................TTAAGAGCGTTACCACAAATCACTG-AAA......................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................TCTAGCTAACTTAAGCA-AGCG--C.............................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTACCACAAATCACTG-AAATACAACA...............................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CACATT-TTGCCAATTCAATTTGAT...................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACA...................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................TTACCACAAATCACTG-AAATACAACATT.............................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TCTAGCTAACTTAAGCA-AGCG--CACACA........................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TACCACAAATCACTG-AAATACAACATT.............................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CAATTTGATTTAAGAGCGTTACCACA..................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TACCACAAATCACTG-AAATACAACA...............................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTTGATTTAAGAGCGTTACCACAAA................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
....................................................................................................................................................................................................................................ATTTAAGAGCGTTACCACAAATCACT...........................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................TTAAGCA-AGCG--CACACATT-TTGCCAAT.............................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................A-AGCG--CACACATT-TTGCCAATTCAATTT......................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CAATTTGATTTAAGAGCGTTACCAC...................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CACATT-TTGCCAATTCAATTTGATTTAAGA.............................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................A------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACACAC................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATCTAGCTAACTTAAGCA-AGCG--CA............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................GTTACCACAAATCACTG-AAATACAACATT.............................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................T-TTGCCAATTCAATTTGATTTAAGAGC...........................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CACTG-AAATACAACATTCACTTTGT.....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TTCAATTTGATTTAAGAGCGTTACCAC...................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TTCAATTTGATTTAAGAGCGTTACCA....................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................TTGAAGAACACAC-----------GCCCA-----------------CA--CACACAC................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ACGAATCTAGCTAACTTAAGCA-AGCG--C.............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................CAATTTGATTTAAGAGCGTTACCACAAATC..............................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CACTG-AAATACAACATTCACTTT.......................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................T-C-ATCCA-GCCGCCG-------A-AAGG------------------------------GCCAAG........................................2511.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTTGATTTAAGAGCGTTACCACAA.................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................TTTAAGAGCGTTACCACAAATCACTG-AAA......................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................ACTG-AAATACAACATTCACTTTGTCATT.................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................CGAATCTAGCTAACTTAAGCA-....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------C..........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TACAACATTCACTTTGTCA...................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTAAGAGCGTTACCACAAATCACTG-AA.......................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................A------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACA...................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................CA--CACACACACA--AACATACTGCAT...............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TCTAGCTAACTTAAGCA-AGCG--CACA..........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................TAGCTAACTTAAGCA-AGCG--C.............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................AAATACAACATTCACTTTGTCATTTA...............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................GCTAACTTAAGCA-AGCG--CACACATT-.....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................CTAACTTAAGCA-AGCG--CACACATT-.....................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ATGTGCATTA------------------------------------------TTGAAGAA.................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TCACTG-AAATACAACATTCACTTTGT.....................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................T-TTGCCAATTCAATTTGATTTAAGAGCGTT........................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TACGAATCTAGCTAACTTAAGCA-AGC.................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................TTACCACAAATCACTG-AAATACAACAT..............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AATTTGATTTAAGAGCGTTACCACAAA................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................ATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACA...................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TAAGAGCGTTACCACAAATCAC............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TTTGATTTAAGAGCGTTACCACAAATCAC............................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................A------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACACA.................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................TCACTTTGTCATTTCGCCATAGTTTTTGAT................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATCTAGCTAACTTAAGCA-AGCG--CACA..........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................A-----------------CA--CACACACACA--AACATACTGCA................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TTGATTTAAGAGCGTTACCACAAATCAC............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................TGATTTAAGAGCGTTACCACAAATC..............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................GATTTAAGAGCGTTACCAC...................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CACACATT-TTGCCAATTCAATTTGATTTAA...............................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TTAAGCA-AGCG--CACACATT-TTGC.................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................TAAGCA-AGCG--CACACATT-TTGCCAATTCAA.........................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................AATTTGATTTAAGAGCGTTACC.....................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TTCAATTTGATTTAAGAGC...........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTGAAGAACACAC-----------GCCCA-----------------CA--CACACA.................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........................................................................................................................................................................................................................ATTCAATTTGATTTAAGAGCGTTA.......................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TAAGAGCGTTACCACAAATCACT...........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................CTAACTTAAGCA-AGCG--CACACATT-T....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................TTAAGCA-AGCG--CACACATT-TTGCCAA..............................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TT-TTGCCAATTCAATTTGATTTAAGA.............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TACCACAAATCACTG-AAATACAACATTCAC..........................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TT-TTGCCAATTCAATTTGATTTAAGAG............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
................................................................................................................................................................CATACTGCATAAATACGAATCTAGCTAA.............................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TCTAGCTAACTTAAGCA-AGCG--CACAC.........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CACAAATCACTG-AAATACAACATTCAC..........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TAAGAGCGTTACCACAAATCACTG-A........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AGCTAACTTAAGCA-AGCG--CACACATT-.....................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TACGAATCTAGCTAACTTAAGCA-AGCG--CA............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TAACTTAAGCA-AGCG--CACACATT-TTG..................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TAACTTAAGCA-AGCG--CACACATT-TTGC.................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................ACCACAAATCACTG-AAATACAACATT.............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CTTAAGCA-AGCG--CACACATT-TTGCCAA..............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................ATTTGATTTAAGAGCGTTACCACAAA................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................CA-----------------CA--CACACACACA--AACATA.....................................................................................................................................................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
-------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--C--------------ATAC----TACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-AGCCA-GCCACCG-------A-AATG------------------------------GCCAAGTACAAA------------------------A---AAACCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................TA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--C--------------A.......................................................................................................................................................................................................................................................2411.0011000000
.......................................................................................................................................................................................................................................TAAGAGCGTTACCACAAATCAC............................................................................................................................................................2211.0011000000
droYak3
-------------------------------------------TATGTGCATTA------------------------------------------TTGAAAAACACAC-----------GCCCA-----------------CA--C--------------ATAC----TACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-AGCCA-GCCGCTG-------A-AAGG------------------------------GCCAAGTACAAA------------------------A-----ACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................TACCACAAATCACTG-AAATACAACT...............................................................................................................................................2511.00101000000000
droEug1
-------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCC---CACAACTCACACACACACAC--------A--CA----C---ATACATACGAATCTAGCTAACTTAAGCA-AGCGCACACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------AAAAGG------------------------------GCCAAGAACAAA------------------------AAAGAAACCASizeHit CountTotal NormTotal
No Reads
droBia1
-------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--C--------------A--C---ACACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCG-----------------------------------------------GCCAAGAACCAA------------------------CAAAAAGCCASizeHit CountTotal NormTotal
No Reads
droTak1
-------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--C---------------------ACACATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------A-AAGG------------------------------GCCAAGAACAAA------------------------A-----ACCASizeHit CountTotal NormTotal
No Reads
droEle1
-------------------------------------------TATGTGCATTA------------------------------------------TTGAAGAACACACAC---------GCCCAAACAC-ACTCACAATCACACAC--------A--CCCATAC-----GAATACGAATGTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------A-AAGA------------------------------GCATAGAACAAA------------------------A-----ACCASizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------TATGTGCTTAA------------------------------------------TTGAAGAACACAC-----------GCCCA-----------------CA--CACACATACACACA----C---TTTCATACGAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCCGCCA-------A-AAGG------------------------------GCCAAGAACAAA------------------------A-----ACCASizeHit CountTotal NormTotal
No Reads
droFic1
-------------------------------------------TATGTGCATTA------------------------------------------TCGAATTACACAC-----------ACCCAAACAC-ACTCACACTCACACAC--------A--------C---ACACATACGAATCTAGCTAACTTAAGCG-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACCACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCT-T-ATCCA-GCTACCA-------AAAAGG------------------------------GAAAAGAACAAAAACAAA------------------AAAGAAACCASizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------TGTATAT-TTATTCATAACGTTTATATAGTACATAGGCATATTACATACATTATCGAGGAACAAAA-----------GAG-----------------------------------------------------------AG-----CTAAGCA---CA--CACACATT-TTGCCAATTCAATCTGATTTAAGAGCGTTACAACAAATCACTGGAAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCTCTAGTCTA-A----------------GG------------------------------------GTACAAAAACAGT----------------AACGAGAAACCASizeHit CountTotal NormTotal
No Reads
droAna3
-------------------------------------------AACACTC-TCAGACACAACA----------------------------------------------------------------------------TTAAACAC--------A--AA---------CATTTAGCAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTTCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCCGTATTCCAAGCCGCCA-------A-AAGT---------GCCCAA---CCACTG------ACCAAGAACAAA------------------------A-----A-AASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................CACACATT-TTTCCAATTCAATTTGATT..................................................................................................................................................................................2711.001010000
droBip1
-------------------------------------------T----GCATTA------------------------------------------TTC------ACACACCCAACACACTCTTA-----------------CA--C------ACA--AC---------CATTTACCAATCTAGCTAACTTAAGCA-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTTTTTGATTAAATCG-T-GTCCATCCCGCCA-------A-GAGAGTGGCTAGTGGCCAGTGTCCAGTG------GCTAAGAACAAA------------------------A-----A--ASizeHit CountTotal NormTotal
No Reads
dp5
-------------------------------------------C---------------------------------------------------------------AC-----------ACACA-----------------CA--C--------------ATAC---ATGCATACAAATCTAGCTAACTTAAGCC-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTT-TTGATTAAATCT-T-ATCGA-GTCGCCGGCTGACAA-CAGA---------GCCGG----------AAAAGA-CCAAGAACACA------------------------------ACCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
-------------------------------------------C----------------------------------------------------------------------------ACACA-----------------CA--C--------------ATAC---ATGCATAAAAATCTAGCTAACTTAAGCC-AGCG--CACACATT-TTGCCAATTCAATTTGATTTAAGAGCGTTACAACAAATCACTG-AAATACAACTTTCACTTTGTCATTTCGCCATAGTT-TTGATTAAATCT-T-ATCGA-GCCGCCGGCAGACAA-CAGA---------GCCGG----------AAAAGA-CCAAGAACACA------------------------------ACCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-------------------------------------------A-CGCACACTT-------------------------------------------------------------------CCCA-----------------CA--CACACACACA---------------------------------------C-ACCA--CACATATT-TTGCAAATTCAATTTTGTTTAAGAGAGAAATAAAA----------ATAATAACTTTCACTTTGTCATATCGCTTTAGTT-TAGTTTTTCTCT-T-GTTTA-TCCATTTCC-------CAAATTT---------------------------GTATCTATCATC---TGAATCCCCTCCCCCCAACCCCATGTACCCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droGri2
-------------------------------------------GTTA-ACATTT-CTATAT-CT--------------------------------TTATTAAACATAC-----------ATCCA-----------------TA--C--------------ATAC---ATACACACAAGTACATCTAGAATAAG---GGCG--CACATTTT-TCGTAAATGCAATTTGGTTTAAGAACGCTACAAAAAATCAC------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................CTAGAATAAG---GGCG--CACATTT.......................................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 09:19 PM