ID:

dsi_16750

 Coordinate:

3r:10151334-10151483 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCAAACATCCTTAAAATCATAATAACAGTACTATATACAATACTGTTTTTGATTATTTCTATAATTTGTCAACGACCTTCTGAACGAAAAATCGAATGTTTTATCCTGTTTATAACTGTAGGTACTAAGCTAAAAGTAATATTTCAGCAAAATAACCAATTTAAACCAATAAATCATGAAATACTTATCACTTTTCTCAGATGGAAATGCGGTGAGCTCGAGCCTGATCCCCGGCGGCTCCTGCCGCGAT
**************************************************(((((((((.((.((((((...(((..(((.....)))...)))..((((((...(((..(((.(((.(((........)))..))).)))...))).))))))..............)))))).))))))))...)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................TGCGGTGAGCTCGAGCCTGATCCC................... 24 0 1 2.00 2 0 2 0 0 0 0
....................................................................................................................................................................................................................TGAGCTCGAGCCTGATACCCGGCGG............. 25 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TGTTTAATCCTGTTTATAACTGTGGGTA.............................................................................................................................. 28 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TCCTGTTTATAACTGTGGGTACTAAG......................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................CTTTTCTCAGGTGGAAATGTGGA..................................... 23 3 1 1.00 1 0 0 0 1 0 0
............................................................ATAATGTGTCAACGACTT............................................................................................................................................................................ 18 2 4 0.25 1 1 0 0 0 0 0
...........................................................TATAATGGGTCAACGAC.............................................................................................................................................................................. 17 2 6 0.17 1 1 0 0 0 0 0
........................................................TCTTATAATTGGTCAACGAC.............................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0
..................................................................................................................ACTGTTGGTACTGAGCT....................................................................................................................... 17 2 8 0.13 1 1 0 0 0 0 0
......................................................................AACGACCTGCTGAAC..................................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 1 0
.............................................................TAATTGGTCAACGACTT............................................................................................................................................................................ 17 2 19 0.05 1 1 0 0 0 0 0
..............................................................................................................................................................................................................................CCTGATCCCCGGCATCT........... 17 2 20 0.05 1 0 0 0 0 0 1
.........................................................................................................CCTTTTATAACTGTAG................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CGTTTGTAGGAATTTTAGTATTATTGTCATGATATATGTTATGACAAAAACTAATAAAGATATTAAACAGTTGCTGGAAGACTTGCTTTTTAGCTTACAAAATAGGACAAATATTGACATCCATGATTCGATTTTCATTATAAAGTCGTTTTATTGGTTAAATTTGGTTATTTAGTACTTTATGAATAGTGAAAAGAGTCTACCTTTACGCCACTCGAGCTCGGACTAGGGGCCGCCGAGGACGGCGCTA
**************************************************(((((((((.((.((((((...(((..(((.....)))...)))..((((((...(((..(((.(((.(((........)))..))).)))...))).))))))..............)))))).))))))))...)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
......................................................................GTGCTGGAAGACTTG..................................................................................................................................................................... 15 1 2 1.00 2 2 0 0 0 0 0
..................................................................ACAGATGCTGCAAGACTT...................................................................................................................................................................... 18 2 4 0.50 2 0 2 0 0 0 0
...........................................................................................................................................TTAAAGTCGTTTTTTTGTTTAAAT....................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................................................................GTACTTCAGGAATAGTGCA......................................................... 19 3 15 0.20 3 0 1 2 0 0 0
...................................................TAATAAAGAAATTAAACA..................................................................................................................................................................................... 18 1 8 0.13 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................TAGGGGCCGCTGAGG......... 15 1 8 0.13 1 1 0 0 0 0 0
...........................................................................................................................................TTAAAGTCGTTTTTTTGTTTAAA........................................................................................ 23 3 9 0.11 1 1 0 0 0 0 0
..................................................................ACAGATGCTGCAAGATTTG..................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 1 0
.....................................................................................................................................................................................................................................AGGCCGCCGGGGACGGC.... 17 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:32 AM