dsi_16744

CDS [2r_7362491_7362582_+]; exon [2r_7362491_7362582_+]; intron [2r_7361882_7362490_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CATGTACTCGCCATATAGCGTATATTGGCGTTTGTAAGCCAAAGGAGAAATGGCGCACCGATAAGGCGAGCGGAAAAAATAAGTCTTGAGAACTCTTAAGTAGAATGTCCCAGCTGTAGGTGTGTTTCGCGATAAGATATACCGCGAACTGTCCGAGTCATTAACTAATACAAGTCTTAAATTTTATTTTCTCCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATTAAGGAGCCGCCACCAGG *************************************************((((((((.....(((....(((..........((((((....)))))).......)))..)))...))))))))....**********************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries	M023 head	SRR553485 Chicharo_3 day-old ovaries
....................................................................................................TAGAATGTCCAAGCAGTAAGT.................................................................................................................................	21	3	1	3.00	3	2	0	1	0	0	0
.........................................................................................................................................................................................................GCCGCCTACACAAAGAGCTGATGTCC.......................	26	0	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................CCTACACAAAGAGCTGATGTCCCTGA...................	26	0	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................AGAGCTGATGTCCCTGATCAAGGAGC..........	26	1	1	1.00	1	0	1	0	0	0	0
..................................................................................................AGTAGAATGTCCCAGCTGTAGGG.................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0
...................................................GGCGCACCGATAAGGCGAGCGGA................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0
..................................................................................................ATTAGAATGTCCAAGCAGTA....................................................................................................................................	20	3	10	1.00	10	9	0	0	0	1	0
......................................................................................................GAATGTCCCAGCTGTAGGTGTGTTTCGC........................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................AGAATGTCCAAGCAGTAAGT.................................................................................................................................	20	3	5	1.00	5	1	0	4	0	0	0
.................................................................................................................................................................................................................CACAAAGAGCTGATGTCCCTGA...................	22	0	1	1.00	1	0	1	0	0	0	0
....................................................................................................TAGAATGTCCAAGCAGTAG...................................................................................................................................	19	2	2	0.50	1	1	0	0	0	0	0
........................................................................................................................................................................................................................AGCTGATGTCCCTGA...................	15	0	2	0.50	1	0	1	0	0	0	0
.....................................................................................................AGAATGTCCAAGCAGTAAG..................................................................................................................................	19	3	20	0.30	6	6	0	0	0	0	0
....................................................................................................TAGAATGTCCAAGCAGTAAG..................................................................................................................................	20	3	5	0.20	1	1	0	0	0	0	0
....................................................................................................TAGAATGTCCAAGCAGTAA...................................................................................................................................	19	3	20	0.15	3	2	0	0	0	1	0
........................................................................................................................................................................TACAAGTCTTGCAATTTATTTT............................................................	22	3	9	0.11	1	0	1	0	0	0	0
..................................................................................................AGTAGAATTTCCCAGC........................................................................................................................................	16	1	10	0.10	1	0	0	0	1	0	0
..............................................................................................................................................................................................................CTACAGAAAGCGGTGATGT.........................	19	3	17	0.06	1	0	0	0	1	0	0
...............................................................AGGTGAGCGGAAAAA............................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................ATACCGCGGACTGACC................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0
......................................................................................................GAATGTCCAAGCAGTAAGT.................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0

GTACATGAGCGGTATATCGCATATAACCGCAAACATTCGGTTTCCTCTTTACCGCGTGGCTATTCCGCTCGCCTTTTTTATTCAGAACTCTTGAGAATTCATCTTACAGGGTCGACATCCACACAAAGCGCTATTCTATATGGCGCTTGACAGGCTCAGTAATTGATTATGTTCAGAATTTAAAATAAAAGAGGGGTGTCGCGGCGGATGTGTTTCTCGACTACAGGGACTAATTCCTCGGCGGTGGTCC **********************************************************************************************************************((((((((.....(((....(((..........((((((....)))))).......)))..)))...))))))))....*************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
..........................................................................................................................................................................................................GGTGGATGTGTTTCTCGAG.............................	19	2	2	0.50	1	1	0	0	0	0
.............................................................................................................................................GGCGCTTGACAGCCT..............................................................................................	15	1	5	0.20	1	1	0	0	0	0
................................................................................................................................................................................AATTTAAAATAACAGATGGATG....................................................	22	3	8	0.13	1	0	1	0	0	0
......................................................................................................................................................................................AAAAAAAAGAGTGGTGTC..................................................	18	2	18	0.06	1	0	0	1	0	0
........................................................................................................................................................................................................................................ATTCCTCGGCAGGCGTCC	18	3	20	0.05	1	0	0	0	0	1
..........................................................................TTTTTATTCAGGTCTCTTCA............................................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:7362291-7362540 +	dsi_16744	CAT-GTA-CTCGC-CATATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCGCACCGATAAGGCG---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCGCGATAAGATATA------------------------------------CCG------------CGAACTGTCCGAGTCATTAACTAATACAA-G-TCT--TA----AATTT-TATTTT---CT-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATTAAGGAGCCGCCACCAGG
droSec2	scaffold_1:4204208-4204457 +		CAT-GTA-CTCGC-CATATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCACACCGATAAGGCC---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCTCGATAAGATATA------------------------------------CCA------------CGAACTGTCCGAGTCATTAACTAATACAA-G-TCT--TA----AATTT-TATTTT---CT-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATTAAGGAGCCGCCACCAGG
dm3	chr2R:6623972-6624211 +		C--------------ATATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCGCACCGATAAGGCG---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCGCGATAAGATATA------------------------------------CGG------------CGAACTGTCCGAGTCATTAACTAATATAA-G-TCT--TA----AATTT-TATTTT--CTG-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGG
droEre2	scaffold_4845:19153391-19153636 -		TAT-GTG-CTCGC-CATCTAGCGTATATTGGCGT-TTGCCAGCCAAA-----------GAAATGGCGCACCGATAAGGCG----------------------------------------GCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GACT--G-------AC-C-AGCTGTAGGTGTGTTCCGCGATAAGATATG------------------------------------CCC------------CGTACTGTCCGATTCATTAACTAATACCA-G-TCTT-TAC----CTTT-TATTTT---CC-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGG
droYak3	2R:2535050-2535300 -		CAT-GTG-CTCGC-CATATAGCGTATATTGGCGT-TTGTATGCCAAA--------GGAGAAATGGCGCACCGATAAGGCG---------------------------------------GGCGGAA-----------AA----------------------------AATAAGTCTT-CAGAAATCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCGCGATAAGATATA------------------------------------GCC------------CGAACTGTCCGAGTCATTAACTAATACAC-G-ACCCTTAA--T---TT-TATTTT---TC-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCTCCACCAGG
droEug1	scf7180000409672:4409538-4409787 -		TAT-GTA-CAGGC-TATATACCCTATATTGGCGT-TTGTAAGCCAAG--------GGAGAAATGGCGCAGAGATAAGGCG---------------------------------------GGCGGAA------------A----------------------------AATAAGTCTT-GAGAACTGC-T--GAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTGTGGGTGTGCTTTGCGATAAGATATA------------------------------------CTA------------AGAACTGTCCAAGTCATTAACTAATTCAA-T-TCTCGTAT--T---TTTTA-ATT---CC-CCCAACAGCGTCGCTTGCACAAAGAGCTGATGTCCCTGATCAAGGAGCCACCGCCGGG
droBia1	scf7180000301506:322714-322966 +		TGT-ATA-CTCGT-CATATAGCGTATATTGGCGT-TTGTAAGCCAAG--------GGAGAAATGGCGCACAGATAAGGCC--------------------------------------TGGCGGAA-----------AA----------------------------AATAAGTCTT-GACAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-GGCCGTAGGTGTGCTTTGCGATAAGATAGG-----------------------------------ACCA------------AGAACTGTCCGAGTAGTTAGCTAATTCGT-G-TGTCTTAT--T---TT-TGTTTT---CG-CCCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCCTGATCAAGGAGCCACCGCCAGG
droTak1	scf7180000415877:201622-201867 -		TAT-GTG-CACGC-CATATAGCGTATATTGGCGT-TTGTAAGCCAAT--------GGAGAAATGGCGCACAGATAAGGCG---------------------------------------GGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTGTAGGTGTGTTCTGTGATAAGATATA-----------------------------------GCCA------------AGAACTGTCCAAGTCATTAGCTAATTCAC-----T--TAC--T---TT-TG-TTG---CC-CTCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCGCCAGG
droEle1	scf7180000491349:843197-843450 -		TAT-GTA-TACGC-CATATAGCGTATATTGGCGTTTTGTAAGCCAAA--------GGAGAAATGGCGCAGAGATAAGGTG---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTTTT-GAGAGCTCTTT--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTGAAGGTGTGTTTCGCGATAAGATAGG------------------------------------CCT------------AGAACTACCCAAGTCATTGACTAATTCAA-A-ACCCTTT----GTTGG-TAATTT---CA-CCCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCTTGATCAAGGAGCCGCCACCGGG
droRho1	scf7180000779999:148434-148676 -		TGT-GTA-------CAAATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCGCAGAGATAAGGCT---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTTTT-GAGAATTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTG-AGGTGTGCTTCGCGATAAGATGGG------------------------------------CCA------------AGAATTGGCCAAGACATTAACTAATTTAA-T-ACT--CAT--T---GC-TATTTT---TG-CCCCACAGCGCCGCCTGCACAAAGAGCTTATGTCCTTAATTAAGGAGCCGCCGCCAGG
droFic1	scf7180000454066:1074092-1074345 -		TAT-ATAGTACGG-CGCATAGAGTATATTGGCAG-TTGTAAGCCGCA--------GAAGAAATGGCGCACAGATAAGATG---------------------------------------GGCGGAA-----------AA----------------------------AATACGTATT-TAGAACTCT-T--AAGTA----------------------------------------------------------------GAAGTAG-------GCCC-AGCTGTAGGTGGGCTCTGCGATAAGATAGA------------------------------------CCA------------ATAAATGGCCGAGTCATTTACTAATTCAT-G-TCTCCTTT--T---TT-TATTTT---CA-CCCTACAGCGCCGCCTGCACAAAGAGCTGATGTCCTTGATCAAGGAGCCGCCGCCGGG
droKik1	scf7180000302481:85138-85376 +		CGT-G-------C-CATATAGCGTATATTG-CGT-TTGTAAGCCAAA--------GGAGAAATGGCGCAGCGATAAGGGG---------------------------------------GACGGAA-----------AA----------------------------AATATATTTTTTAAAACTCT-T--AAGCA----------------------------------------------------------------GAGA--GACA----CTTT-GGCCGAAGGTGTGCTTTGCGATAAGATACC--------------------------------------G---------------------CGAGTGCCTTACTAATTCCACA-TCTCTTAC--T---TT-ACTTTT---TAACCCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCTTGATCAAGGAGCCGCCACCGGG
droAna3	scaffold_13266:18115933-18116205 +	dan_2091	TGT-GTA-CTCGT-CATATAGAGTATATTGGCGG-TTGTAAGCCAAA--------GGAGAAATGGCGAGCCGATAAGATG---------------------------------------GGCGGAA-----------AA----------------------------AATAATTTTT-AAGCACTCC-G--AAG-A----------GAAAAGC--------------------------GAAAAACAAAGCA---AAGGC-------CCATTTGGCCC-GGCTTTGTGT-TGGTCCAAGATAAGATACT-----------------------------------CCCG-------AGTCCCGACAT-GCCAAGTCATTCACTAATTTGA-G--------C------TC-TCCCTC---CA-TTCCACAGCGCCGGCTGCACAAAGAGTTGATGTCCCTGATCAAGGAGCCGCCGCCGGG
droBip1	scf7180000396735:1388974-1389260 +		TAT-GTA-CCCGT-CATGTAGAGTATATTGGCGC-TTGTAAGCCAAA--------GGAGAAATGGCGAGCCGATAAGATG---------------------------------------GGCGGAA-----------AA----------------------------AATAATTTTT-AAGCACTCC-AATAAG-A----------GAAAAGC--------------------------AAAAAACA-------AAAAGC-------CCATTTGGCCC-GGCTTTGTGT-TGGTCCAAGATAAGATACT-----------------------------------CCCGTCTCCCGACTCCCGACATG-CCAAGTCATTCACTAATTTGA-GCTCTCCCTT--T---TT-TGTTTC---CC-ACCCACAGCGCCGGCTGCACAAAGAGTTGATGTCCCTGATCAAGGAGCCGCCACCGGG
dp5	3:16024275-16024593 -	dps_1238	TAT-GTA-CATATGTATATAGCGACTATTGACGT-TTGTAAGCCAAA--------AGAGAAATGGCGCAGAGATAAGGTG---------------------------------------GGCTGAA------------------------------------------ATGGGTTTTCGAGAACTCT-A--GAGCA-----------CAAAGCGCAATTCCTATGTGCAAAA-AAAAGAAAGGAA-------AAAA------------AATGTGGCCTGGGCTGAAGGTGTGTTTTTCGATAAGATAAATGGTGTGGGGAGGGGAGGGGAGGTGGAACTGGCATGCC---------------ACCTACCAAAGTCATTCACTAATTCGT---------TC--T---TT-CCTTTG---TA-CTCTACAGCGCCGGCTTCACAAAGAGTTGATGTCCCTGATCAAGGAGCCGCCGCCGGG
droPer2	scaffold_4:740900-741211 +		TAT-GT---------ATATAGCGACTATTGACGT-TTGTAAGCCAAA--------AGAGAAATGGCGCAGGGATAAGGTG---------------------------------------GGCTGAA------------------------------------------ATGGGTTTTCGAGAACTCT-A--GAGCA-----------CAAAGCGCAATTCCTATGTGCAAAAAAAAAGAAAGGAA-------AAAA------------AATGTGGCCTGGGCTGAAGGTGTGTTTTTCGATAAGATAAATGGTGTGGGGAGGGGAGGAGAGGTGGAACTGGCATGCC---------------ACCTACCAAAGTCATTCACTAATTCGT---------TC--T---TT-CCTTTG---TA-CTCTACAGCGCCGGCTTCACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCGCCGGG
droWil2	scf2_1100000004512:1901588-1901853 -		G-----------C-CA------GAATATTGACGT-TTGTAAGCCAAAACAGGAACGGAGAAATGGCGTATAGATAAGACT---------------------------------------TG---AAAAGAGACGACGAA----------------------------AAGAAGCAGA-GAGAA---------AGGG----------------------------------------------------------------GGGA--G-------TTCA-GGTTTAAGGTGTGCT-TATGATAAGATAACT----TGGGGAATCAGCAAAAGGCAAAA---G----CTT------------ACATTTTTTAAAGTTATTTACTTATTTTT-G-----TTAC--C---TT-TCCTTT---TT-ACCTACAGCGTCGCCTGCACAAAGAGCTCATGTCACTGATAAAGGAGCCACCACCAGG
droVir3	scaffold_12875:16629302-16629593 +	dvi_7324	CTCCATA-TAT-A-TACATATCGCAGATTGACGT-TTGTAAGCCAAA--------AG-GAAATGTGTAAGCGATAAAGTCTCCATATATACAGACATCATATATACAGACATTATATTTGGCCAGC-----------AAAACACGCGATATATCGTTAAGAAGGAAAACTGAAATTT-TAGGGCACTTT----GTGGGCTTGGGCTAAATTGC--------------------------CAAAAATAAAATC---GAT-------------------------------------------------------------------------------------------------------------------------GCTCATTTGC-G-ACTCGTCGGTT---TC-TGCTCTCT-CC-AATTGCAGCGCCGTTTGCACAAAGAACTGATGTCCCTGATCAAGGAGCCACCGCCAGG
droMoj3	scaffold_6496:7119091-7119154 -		TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---CT-CTTTACAGCGTCGTTTGCATAAAGAACTGATGTCCTTGATCAAGGAGCCGCCGCCAGG
droGri2	scaffold_14713:18264-18320 +		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAGCGCCGCCTGCAAAAAGAGCTGATGTCCCTGATCAAGGAGCCACCGCAAGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CAT-GTA-CTCGC-CATATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCGCACCGATAAGGCG---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCGCGATAAGATATA------------------------------------CCG------------CGAACTGTCCGAGTCATTAACTAATACAA-G-TCT--TA----AATTT-TATTTT---CT-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATTAAGGAGCCGCCACCAGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCTACACAAAGAGCTGATGTCC.......................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACACAAAGAGCTGATGTCCCTGA...................	26	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGG..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................GGCGCACCGATAAGGCG---------------------------------------AGCGGA..................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCGC.....................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAGAGCTGATGTCCCTGA...................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGATGTCCCTGA...................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CAT-GTA-CTCGC-CATATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCACACCGATAAGGCC---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCTCGATAAGATATA------------------------------------CCA------------CGAACTGTCCGAGTCATTAACTAATACAA-G-TCT--TA----AATTT-TATTTT---CT-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATTAAGGAGCCGCCACCAGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACAAAGAGCTGATGTCCCT.....................	23	1	1.00	1	0	0	1	0
.AT-GTA-CTCGC-CATATAGCGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACACAAAGAGCTGATGT.........................	21	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGATGTCCCTGATTAAGGAGC..........	25	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGCTGATGTCCCTGATTAAG..............	24	1	1.00	1	1	0	0	0

dm3

C--------------ATATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCGCACCGATAAGGCG---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCGCGATAAGATATA------------------------------------CGG------------CGAACTGTCCGAGTCATTAACTAATATAA-G-TCT--TA----AATTT-TATTTT--CTG-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACACAAAGAGCTGATGTCCC......................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGATGTCCCTGATCAAGGAGCCGC.......	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTGATGTCCCTGATCAA...............	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GCGT-TTGTAAGCCAAA--------GGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGCTGATGTCCCTGATCA................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGAGCTGATGTCCCTGATC.................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGCTGATGTCCCTGATCAAGGA............	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAAAGAGCTGATGTCCCTGATCAAGG.............	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCCTGATCAAGGAGC..........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTCCCTGATCAAGGAGC..........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGATGTCCCTGATCAG...............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGATGTCCCTGATCAAG..............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACAAAGAGCTGATGTCC.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCTACACAAAGAGCTG.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGATCAAGGAGCCGC.......	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGCTGATGTCCCTGATCAAGGA............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TAATATAA-G-TCT--TA----AATTG-AG....................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TAT-GTG-CTCGC-CATCTAGCGTATATTGGCGT-TTGCCAGCCAAA-----------GAAATGGCGCACCGATAAGGCG----------------------------------------GCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GACT--G-------AC-C-AGCTGTAGGTGTGTTCCGCGATAAGATATG------------------------------------CCC------------CGTACTGTCCGATTCATTAACTAATACCA-G-TCTT-TAC----CTTT-TATTTT---CC-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCCTGATCAAGGAGC..........	20	1	2.00	2	0	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGCTGATGTCCCTGATCAAGGA............	26	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACACAAAGAGCTGATGTCC.......................	23	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACACAAAGAGCTGAT...........................	19	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAGAGCTGATGTCCC......................	19	1	1.00	1	0	0	0	0	0	1	0

droYak3

CAT-GTG-CTCGC-CATATAGCGTATATTGGCGT-TTGTATGCCAAA--------GGAGAAATGGCGCACCGATAAGGCG---------------------------------------GGCGGAA-----------AA----------------------------AATAAGTCTT-CAGAAATCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGGTGTGTTTCGCGATAAGATATA------------------------------------GCC------------CGAACTGTCCGAGTCATTAACTAATACAC-G-ACCCTTAA--T---TT-TATTTT---TC-CCCCACAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCCTCCACCAGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTACACAAAGAGCTGAT...........................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACACAAAGAGCTGATGTC........................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCTGATGTCCCTGATCAAGGA............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCCTGATCAAGGAGCCTCCACCA..	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGATGTCCCTGATCAAGGAGCCT........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........TCGC-CATATAGCGTATATTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTT-CAGAAATCT-T--AAGTA----------------------------------------------------------------GAAT--G-------TC...........................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................T-T--AAGTA----------------------------------------------------------------GAAT--G-------TCCC-AGCTGTAGG...............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCTACACAAAGAGCTGAT...........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACAAAGAGCTGATGTCCC......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTACACAAAGAGCTGATG..........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGCTGATGTCCCTGAT..................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGCTGATGTCCCTGATCAAGGAGC..........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGATCAAGGAGCCTCCACC...	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTCCCTGATCAAGGAGCCTC.......	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTACACAAAGAGCTGAT...........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TAT-GTA-CAGGC-TATATACCCTATATTGGCGT-TTGTAAGCCAAG--------GGAGAAATGGCGCAGAGATAAGGCG---------------------------------------GGCGGAA------------A----------------------------AATAAGTCTT-GAGAACTGC-T--GAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTGTGGGTGTGCTTTGCGATAAGATATA------------------------------------CTA------------AGAACTGTCCAAGTCATTAACTAATTCAA-T-TCTCGTAT--T---TTTTA-ATT---CC-CCCAACAGCGTCGCTTGCACAAAGAGCTGATGTCCCTGATCAAGGAGCCACCGCCGGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGT-ATA-CTCGT-CATATAGCGTATATTGGCGT-TTGTAAGCCAAG--------GGAGAAATGGCGCACAGATAAGGCC--------------------------------------TGGCGGAA-----------AA----------------------------AATAAGTCTT-GACAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-GGCCGTAGGTGTGCTTTGCGATAAGATAGG-----------------------------------ACCA------------AGAACTGTCCGAGTAGTTAGCTAATTCGT-G-TGTCTTAT--T---TT-TGTTTT---CG-CCCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCCTGATCAAGGAGCCACCGCCAGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAT-GTG-CACGC-CATATAGCGTATATTGGCGT-TTGTAAGCCAAT--------GGAGAAATGGCGCACAGATAAGGCG---------------------------------------GGCGGAA-----------AA----------------------------AATAAGTCTT-GAGAACTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTGTAGGTGTGTTCTGTGATAAGATATA-----------------------------------GCCA------------AGAACTGTCCAAGTCATTAGCTAATTCAC-----T--TAC--T---TT-TG-TTG---CC-CTCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCGCCAGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAT-GTA-TACGC-CATATAGCGTATATTGGCGTTTTGTAAGCCAAA--------GGAGAAATGGCGCAGAGATAAGGTG---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTTTT-GAGAGCTCTTT--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTGAAGGTGTGTTTCGCGATAAGATAGG------------------------------------CCT------------AGAACTACCCAAGTCATTGACTAATTCAA-A-ACCCTTT----GTTGG-TAATTT---CA-CCCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCTTGATCAAGGAGCCGCCACCGGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGT-GTA-------CAAATAGCGTATATTGGCGT-TTGTAAGCCAAA--------GGAGAAATGGCGCAGAGATAAGGCT---------------------------------------AGCGGAA-----------AA----------------------------AATAAGTTTT-GAGAATTCT-T--AAGTA----------------------------------------------------------------GAAT--G-------GCCC-AGCTG-AGGTGTGCTTCGCGATAAGATGGG------------------------------------CCA------------AGAATTGGCCAAGACATTAACTAATTTAA-T-ACT--CAT--T---GC-TATTTT---TG-CCCCACAGCGCCGCCTGCACAAAGAGCTTATGTCCTTAATTAAGGAGCCGCCGCCAGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TAT-ATAGTACGG-CGCATAGAGTATATTGGCAG-TTGTAAGCCGCA--------GAAGAAATGGCGCACAGATAAGATG---------------------------------------GGCGGAA-----------AA----------------------------AATACGTATT-TAGAACTCT-T--AAGTA----------------------------------------------------------------GAAGTAG-------GCCC-AGCTGTAGGTGGGCTCTGCGATAAGATAGA------------------------------------CCA------------ATAAATGGCCGAGTCATTTACTAATTCAT-G-TCTCCTTT--T---TT-TATTTT---CA-CCCTACAGCGCCGCCTGCACAAAGAGCTGATGTCCTTGATCAAGGAGCCGCCGCCGGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGT-G-------C-CATATAGCGTATATTG-CGT-TTGTAAGCCAAA--------GGAGAAATGGCGCAGCGATAAGGGG---------------------------------------GACGGAA-----------AA----------------------------AATATATTTTTTAAAACTCT-T--AAGCA----------------------------------------------------------------GAGA--GACA----CTTT-GGCCGAAGGTGTGCTTTGCGATAAGATACC--------------------------------------G---------------------CGAGTGCCTTACTAATTCCACA-TCTCTTAC--T---TT-ACTTTT---TAACCCCACAGCGCCGCCTGCACAAAGAGCTGATGTCCTTGATCAAGGAGCCGCCACCGGG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGT-GTA-CTCGT-CATATAGAGTATATTGGCGG-TTGTAAGCCAAA--------GGAGAAATGGCGAGCCGATAAGATG---------------------------------------GGCGGAA-----------AA----------------------------AATAATTTTT-AAGCACTCC-G--AAG-A----------GAAAAGC--------------------------GAAAAACAAAGCA---AAGGC-------CCATTTGGCCC-GGCTTTGTGT-TGGTCCAAGATAAGATACT-----------------------------------CCCG-------AGTCCCGACAT-GCCAAGTCATTCACTAATTTGA-G--------C------TC-TCCCTC---CA-TTCCACAGCGCCGGCTGCACAAAGAGTTGATGTCCCTGATCAAGGAGCCGCCGCCGGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTTGATGTCCCTGATCAAGGAGC..........	27	1	3.00	3	0	0	0	0	0	3
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTCCCTGATCAAGGAGCC.........	24	1	3.00	3	0	0	0	0	1	2
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAGAGTTGATGTCCCTG....................	21	1	2.00	2	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAGAGTTGATGTCCC......................	20	1	2.00	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTCCCTGATCAAGGAGC..........	23	1	2.00	2	0	0	0	0	1	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAGAGTTGATGTCCCTGAT..................	24	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................G--------C------TC-TCCCTC---CA-TTCCACAG..................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGATCAAGGAGCCGCC......	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................AATTTGA-G--------C------TC-TCCCTC---CA-TTCCACAG..................................................	27	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTCCCTGATCAAGGAGCCGC.......	26	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAGAGTTGATGTCCCTG....................	22	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAGAGTTGATGTCCCT.....................	21	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAGAGTTGATGTCC.......................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGTTGATGTCCCTGATCAA...............	24	1	1.00	1	0	0	0	0	0	1
.........................................................................TAAGATG---------------------------------------GGCGGAA-----------AA----------------------------AATAATTT................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGATGTCCCTGATCAAGGAGCCGC.......	27	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGATGTCCCTGATCAAGGAGCCGCC......	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................AATTTTT-AAGCACTCC-G--AAG-A----------GA...............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTCCCTGATCAAGGAGCCGCC......	27	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAAAGAGTTGATGTCCCTG....................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAAAGAGTTGATGTCCCTGAT..................	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGTTGATGTCCCTGAT..................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCACAAAGAGTTGATGTCCCTGAT..................	28	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................GAAAAACAAAGCA---AAGGA-------....................................................................................................................................................................................................................	18	6	0.17	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................AACAAAGCA---AAGGC-------CCCC................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0
...............................................................................................................................................................................................................AAAAGC--------------------------GAAAAACAAAGA....................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0

droBip1

TAT-GTA-CCCGT-CATGTAGAGTATATTGGCGC-TTGTAAGCCAAA--------GGAGAAATGGCGAGCCGATAAGATG---------------------------------------GGCGGAA-----------AA----------------------------AATAATTTTT-AAGCACTCC-AATAAG-A----------GAAAAGC--------------------------AAAAAACA-------AAAAGC-------CCATTTGGCCC-GGCTTTGTGT-TGGTCCAAGATAAGATACT-----------------------------------CCCGTCTCCCGACTCCCGACATG-CCAAGTCATTCACTAATTTGA-GCTCTCCCTT--T---TT-TGTTTC---CC-ACCCACAGCGCCGGCTGCACAAAGAGTTGATGTCCCTGATCAAGGAGCCGCCACCGGG	Size	Hit Count	Total Norm	Total
No Reads

dp5

TAT-GTA-CATATGTATATAGCGACTATTGACGT-TTGTAAGCCAAA--------AGAGAAATGGCGCAGAGATAAGGTG---------------------------------------GGCTGAA------------------------------------------ATGGGTTTTCGAGAACTCT-A--GAGCA-----------CAAAGCGCAATTCCTATGTGCAAAA-AAAAGAAAGGAA-------AAAA------------AATGTGGCCTGGGCTGAAGGTGTGTTTTTCGATAAGATAAATGGTGTGGGGAGGGGAGGGGAGGTGGAACTGGCATGCC---------------ACCTACCAAAGTCATTCACTAATTCGT---------TC--T---TT-CCTTTG---TA-CTCTACAGCGCCGGCTTCACAAAGAGTTGATGTCCCTGATCAAGGAGCCGCCGCCGGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGCTTCACAAAGAGT...............................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................CGT---------TC--T---TT-CCTTTG---TA-CTCTACAGCG................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGATGTCCCTGATCAAGGAGCCGC.......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCCTGATCAAGGAGCCGC.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGGCTTCACAAAGAGTTG.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGAGTTGATGTCCCTGATCAA...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAAAGAGTTGATGTCCCTGATC.................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGATCAAGGAGCCT........	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TGTGGGGAGGGGAGGGGAGGTGGA...............................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGGCTTCACAAAGA.................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGTCCCTGATCAAGG.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCCTGATCAAGGAGCCG........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCCTGATCAAGGAGC..........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTTGATGTCCCTGATC.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCGAGAACTCT-A--GAGCA-----------CAAAA...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................TGGCGCAGAGATAAGGTG---------------------------------------GGT.....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................ATGGTGTGGGGAGGGGAGGGGA.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................TGGGGAGGGGAGGGGAGGTGG................................................................................................................................................	21	2	1.00	2	0	1	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAAAGAGTTGATGTCCCTGATC.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TAT-GT---------ATATAGCGACTATTGACGT-TTGTAAGCCAAA--------AGAGAAATGGCGCAGGGATAAGGTG---------------------------------------GGCTGAA------------------------------------------ATGGGTTTTCGAGAACTCT-A--GAGCA-----------CAAAGCGCAATTCCTATGTGCAAAAAAAAAGAAAGGAA-------AAAA------------AATGTGGCCTGGGCTGAAGGTGTGTTTTTCGATAAGATAAATGGTGTGGGGAGGGGAGGAGAGGTGGAACTGGCATGCC---------------ACCTACCAAAGTCATTCACTAATTCGT---------TC--T---TT-CCTTTG---TA-CTCTACAGCGCCGGCTTCACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCGCCGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAAAGAGCTGATGTCCCT.....................	22	1	3.00	3	0	1	0	0	0	2
........................................................................ATAAGGTG---------------------------------------GGCTGAA------------------------------------------ATGGGT.................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCACAAAGAGCTGATGTCCCT.....................	23	1	2.00	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCCCTGATCAAGGAGC..........	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCCTGATCAAGGAGCCGC.......	23	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................ATAAATGGTGTGGGGAGGG............................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAAGAGCTGATGTCCCC.....................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGTCCCTGATCAAGGAGCC.........	24	1	1.00	1	0	1	0	0	0	0

droWil2

G-----------C-CA------GAATATTGACGT-TTGTAAGCCAAAACAGGAACGGAGAAATGGCGTATAGATAAGACT---------------------------------------TG---AAAAGAGACGACGAA----------------------------AAGAAGCAGA-GAGAA---------AGGG----------------------------------------------------------------GGGA--G-------TTCA-GGTTTAAGGTGTGCT-TATGATAAGATAACT----TGGGGAATCAGCAAAAGGCAAAA---G----CTT------------ACATTTTTTAAAGTTATTTACTTATTTTT-G-----TTAC--C---TT-TCCTTT---TT-ACCTACAGCGTCGCCTGCACAAAGAGCTCATGTCACTGATAAAGGAGCCACCACCAGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCTGCACAAAGAGCT..............................	19	1	2.00	2	0	0	2	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCACTGATAAAGGAGCCACCACCA..	28	1	2.00	2	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAGAGCTCATGTCACTGAT..................	24	1	2.00	2	0	0	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCACTGATAAAGGAGC..........	19	1	2.00	2	0	1	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTCACTGATAAAGGAGCC.........	22	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGAGCTCATGTCACTGA...................	21	1	1.00	1	0	1	0	0	0
..................................................................................................................................GACGACGAA----------------------------AAGAAGCAGA-GA...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................GATAACT----TGGGGAATCAGCAAAAGGCA.................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACAAAGAGCTCATGTCA.......................	21	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................GCAGA-GAGAA---------AGGG----------------------------------------------------------------GGGA--G-------TTCA-........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................GAGAA---------AGGG----------------------------------------------------------------GGGA--G-------TTCA-........................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAAAGAGCTCATGTCACC.....................	22	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTCACTGATAAAGGA............	20	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCTCATGTCACTGATAAAGGA............	24	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGAGCTCATGTCACTGAT..................	22	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCCACCACCAGG	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCACTGATAAAGGAG...........	19	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCACAAAGAGCTCATGTCACTGATA.................	27	1	1.00	1	0	0	1	0	0

droVir3

CTCCATA-TAT-A-TACATATCGCAGATTGACGT-TTGTAAGCCAAA--------AG-GAAATGTGTAAGCGATAAAGTCTCCATATATACAGACATCATATATACAGACATTATATTTGGCCAGC-----------AAAACACGCGATATATCGTTAAGAAGGAAAACTGAAATTT-TAGGGCACTTT----GTGGGCTTGGGCTAAATTGC--------------------------CAAAAATAAAATC---GAT-------------------------------------------------------------------------------------------------------------------------GCTCATTTGC-G-ACTCGTCGGTT---TC-TGCTCTCT-CC-AATTGCAGCGCCGTTTGCACAAAGAACTGATGTCCCTGATCAAGGAGCCACCGCCAGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGATGTCCCTGATCAAGGA............	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATATCGTTAAGAAGGAAAACT.....................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTTTGCACAAAGAACTGATGTCCC......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAAAGAACTGATGTC........................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TATATCGTTAAGAAGGAAAACT.....................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATCAAGGAGCCACCGCCAGG	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGATCAAGGAGCCAC.......	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAAGAACTGATGTCCC......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGATCAAGGAGCCACCGCCAGG	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.TCCATA-TAT-A-TACATATCGCAGATTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCACAAAGAACTGATGTCC.......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCCTGATCAAGGAGC..........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCCTGATCAAGGAGCCA........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCACAAAGAACTGATGT.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACAAAGAACTGATGTCCCTGATCA................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCCTGATCAAGGAGCC.........	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTGCACAAAGAACTGATGTCCCT.....................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTCCCTGATCAAGGAGCCAC.......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCCTGATCAAGGAGCCACC......	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCACAAAGAACTGATGTC........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGACGT-TTGTAAGCCAAA--------AG-GAAATGT..............................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACAAAGAACTGATGTC........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGATGTCCCTGATCAAGGAGCCA........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGTTTGCACAAAGAACT..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................AATGTGTAAGCGATAAAGT................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................TC---GAT-------------------------------------------------------------------------------------------------------------------------GCTCATTTGC-G-ACTCGTCGGT.............................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCCTGATCAAGGA............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---CT-CTTTACAGCGTCGTTTGCATAAAGAACTGATGTCCTTGATCAAGGAGCCGCCGCCAGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGATGTCCTTGATCAAGGAGCCGC.......	28	1	2.00	2	1	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGTCCTTGATCAAGGAGCC.........	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCTTGATCAAGGAGCCGC.......	23	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGTCCTTGATCAAGGAGCCGC.......	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAACTGATGTCCTTGATCAAGG.............	25	1	1.00	1	1	0	0	0	0	0

droGri2

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTACAGCGCCGCCTGCAAAAAGAGCTGATGTCCCTGATCAAGGAGCCACCGCAAGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_16744

2r:7362341-7362490 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.4	-20.2	-20.1