ID:

dsi_16743

 Coordinate:

x:12036364-12036642 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.7 -9.7 -9.3

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
star
  1. 2l:1220256-1220270 -
  2. 2r:1239381-1239395 +
  3. 2r:10734972-10734986 -
  4. 3r:3760521-3760535 +
  5. x:7709793-7709807 -
  6. dsi_16743  x:12036579-12036593 -

Sense Strand Reads

GGAATCGGAATCTTGCCCGGATTGCAAAGCGGACTGGGAGTGAGAGAGTGGTTCGTCACACTTGCAGTTGCAGTTGCAGCAGCAGCAGCAGCAGTAGTGGCAGCAGCAAAAATCAACAAAATCAACAAAAGGCAACACAAAAGACGGTGGGCAAAAAGCAATCAGCAAACAGTCGGTTGTAAAAAGGACTCGCAAAATAGGAAAATCGTGGCAAGGGGCGAGGGGGGGTTGGATTTGGTGTGTAGGCTAGCTGCTTGCCACTGCTGCTCGCTGGCTGGGAAATTCGTGCTGTGTTTTGTTTTCACATTTCCCTTCATTTTTTTTTCAAGTATTTTTAGTGCTTGCGTGCGAAATTTTGTTGGTGTCAAAGTTAAACAAT
***************************************************************************************************.....................................((((..(((.((..((............))..)).)))..))))..........********************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
....................ATTGCAAAGCGGACTGGGAG................................................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GTCGGTTGTAAAAAGGACT............................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................GGTTCGTCGCACTTGAAG........................................................................................................................................................................................................................................................................................................................ 18 2 1 1.00 1 0 0 1 0 0 0 0 0 0
....................ATTGCAAAGCGGACTGGGA.................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............TTGCCCGGATTGCAAAGCGGAC......................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................GCAAAGCGGACTGGGAGTGAGAGG............................................................................................................................................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................GCAAAGCGGACTGGGAGTGAGAGA............................................................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................GCGAAATTTTGTTGGTGTC............. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................AACAGTCGGTTGTAAAAAGGA............................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................TTGCAAAGCGGACTGGGAGTGAGA.............................................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TTGATGTGTAGGATAGGTG.............................................................................................................................. 19 3 14 0.43 6 0 0 0 1 0 0 2 2 1
............................................................................................................................................................................................................................AGGAGGGGTTGGATTTCGT............................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................ATGGGGACTCGCAAAATAGG.................................................................................................................................................................................. 20 3 8 0.25 2 0 0 0 0 0 2 0 0 0
...................................................................................................GCAGCAGCAAAAATC......................................................................................................................................................................................................................................................................... 15 0 6 0.17 1 0 0 0 1 0 0 0 0 0
.............................................GTGTGATTCGTCACACT............................................................................................................................................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0
..ATTCGGAATCTTGCACG........................................................................................................................................................................................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CGGCTCGCTGGCTTGGA................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................AGTTGCAGTTGCAGCA.......................................................................................................................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CCTTAGCCTTAGAACGGGCCTAACGTTTCGCCTGACCCTCACTCTCTCACCAAGCAGTGTGAACGTCAACGTCAACGTCGTCGTCGTCGTCGTCATCACCGTCGTCGTTTTTAGTTGTTTTAGTTGTTTTCCGTTGTGTTTTCTGCCACCCGTTTTTCGTTAGTCGTTTGTCAGCCAACATTTTTCCTGAGCGTTTTATCCTTTTAGCACCGTTCCCCGCTCCCCCCCAACCTAAACCACACATCCGATCGACGAACGGTGACGACGAGCGACCGACCCTTTAAGCACGACACAAAACAAAAGTGTAAAGGGAAGTAAAAAAAAAGTTCATAAAAATCACGAACGCACGCTTTAAAACAACCACAGTTTCAATTTGTTA
*********************************************************************************************************************************************************************************************.....................................((((..(((.((..((............))..)).)))..))))..........*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR902009
testis
 M053
female body
 SRR618934
dsim w501 ovaries
....................................TCGCACTCTCTAACCAAGCAGT................................................................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0
.....GCCTTAGAATTGGCCTAA.................................................................................................................................................................................................................................................................................................................................................................... 18 2 8 0.75 6 0 0 2 3 0 1 0
...........................................................................................................TTTTTAGTGGCTTTAGTTGT............................................................................................................................................................................................................................................................ 20 2 3 0.33 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................AAAAAAAAAGTTGATAAAAAT.......................................... 21 1 4 0.25 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................ACGTTGACGACGAGCGAC.......................................................................................................... 18 1 5 0.20 1 1 0 0 0 0 0 0
...................................................................AGCGTCAACGTCGTCGTCGTC................................................................................................................................................................................................................................................................................................... 21 1 7 0.14 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................CATCAAAATCACCAAGGCAC............................... 20 3 7 0.14 1 0 0 1 0 0 0 0
...................................................................AGCGTCAACGTCGTCGTCGT.................................................................................................................................................................................................................................................................................................... 20 1 10 0.10 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AGGGAAGTAAAAAAACA...................................................... 17 1 12 0.08 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................CCGCTCCCCCCCAAG.................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................................GAACGGTGACTACGA............................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:12036314-12036692 - dsi_16743 GG---AATCGGAATC-TTGCCCGGATTGC--AAAGC-----GGACTGGGAGTGAGAGAGTG---GTTCGTCA---------------CACTT-------------G------CAGTTGCAGTTGC------AGC------AGCAGCAGCAGCA------G------------------------TAG------------------TGGCAGCA----GCAA--AAATCAACAAAATCAAC-------AA--AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------CAAAAT----A---GGAAAATCG--TGGC------------AAGGG-GCG-------------------------------------------------------AGGGGGGG--TTGG-----AT----TTGGTGTGTAG--------GC-TA--------------G------------------------------------------------------CTGCTTGCCACT---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGC--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TCA----------------TTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAAT
droSec2 scaffold_21:433019-433427 - GG---AATCGGAATC-TTGCCCGGATTGC--AAAGC-----GGACTGGGAGTGAGAGAGTG---GTTCGTCAC---------------ACTT-------------ACAGTTGCA------------------GC------AGCAGCAGCAGCA------G------------------------TAG------------------TGTCAGCA----GCA---AAATCAACAA------------------AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------CAAAAT----A---GGAAAATCG--TGGC------------AAGGGGGCGGGGGGGATTTGGTGTGTAAAAAGGACTCGCAA-AATAGGAAAATCGTGGC-----AAGG-GGGCGGGGG---GGAT----TTGGTGTGTAG--------GC-------------------------------------------------------------------------TGCTTGCCACT---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGC--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TCA-------------------TTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAAT
dm3 chrX:12678506-12678893 - GG---AATCGGAATC-TTGCCCGGATTGCATAGAGC-----GTACTGGGAGTGAGAGAGTG---GTTCGTCAC---------------ACTT-------------G------CAGTTGCAGTTGC------AGC------AGCAGCAGCAGCA------GCAGCAGCAGC-------------GTAG------------------TGGCAGCA----GCAA--AAATCAACAAAATCAAC-------AA--AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------GAAAAT----G---GGAAAATCG--TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----CTGGTGTGTAG--------GC-TA--------------G------------------------------------------------------CTGCTTGCCACT---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGC--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TCAT-T-------------TTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAAT
droEre2 scaffold_4690:14168498-14168880 + GG---AATCGGAATC-TTGCCCGGATTG---AAGGC-----GGACTGGGAGTGAGAGAGTG---GTTCGTCA---------------CACTT-------------G------CAGTTGCAGCAGC------AGC------AGCAGCAGCAG------------CAGTGGCAGCAGC------AGCAG------------------TGGCAGCA----GCGA--AAATCAACAGAATCAAC-------A---AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCGGAAGCTCGGAAAAT----A---GGAAAATCGGG--GCGACGAAAAACG-------------------------------------T----------------------GG--------GGG--GTG------------------T-------------C-TG--------------C------------------------------------------------------CTGCTTGCCACC---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGT--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TC-----------------CTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACCAT
droYak3 X:6957928-6958305 - GG---AA------TC-TTGCCCGGATTGC--CAAGC-----GGACTGGGAGTGAGAGCGTG---GTTCGTCA---------------CACTT-------------G------CAGTTGC------------AGCAGCAGCAGCAGTAGTAG------------TAGT------GGC------AATAG------------------TGGCAGCA----GCAG--AAATCAACAAAATCAAC-------A---AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGCTTGTGTGAAAGGACTCGG------GGAAAAT----A---GGAAAATCGGG--GCGAGGAAAAACG-A----------------------------------------------------------AGAGG-----GCG--GTG---------------------CG--------AC-TA--------------C------------------------------------------------------C-------TACTGCTGC---------TACT-CGCTGGCTGGGAAATTC-GTGT--TGTG-TTGTGT--------------TTTTGTTTT--CAAATTT-CCCT-TACTCT-------------TTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAAT
droEug1 scf7180000409110:1096815-1097239 - AG---AATC-----T-TTGCCCGGATTCT--AAAGC-----GGACTGAG----AGAGAGTG---GTTCGGCACGGTTTCA-AGTTTACACTT-------------G------CAACAGC------------AGCAGCAGCAGCAG------------------CAGCGGCAGCTGC------AGCAG------------CAATAGTGG--GCA----GCAA-AAAATCAACAAAATCAAC-------A---AAG-------------------GC--AACA---AAGGC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTAG--------GAAAAT----A---GAAAAATCGGGTGGCGAAT-AAAACA-----------------------------------------------GGGAAATC-TAGCAGAGG-----GGG--CTA---------------------------G---CCT------TCTTGTTGTTGCTACTGCTACGGCTGCCACCG---------------------------------CCA-CTGCCACT---GC---------TGCTTCTGTGGCTGGGAAATTT-GT-----TT---------------------GTTGTGCTTT--CACATTT-CCCTTACAT-------------TCCTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACATT
droBia1 scf7180000298389:285199-285551 - GA---AATCGGAATC-TAGCCCGGATTGT--GATTC-----AGACTGAC----AGAGAGTA---ATTCGGCACGGCTCCA-AGTTTACACTT-------------G------CA------------------GC------AGCAGCAGCAG------------------------------------------------------------CA----GCAA--AAATCAACAAAAGC-------------------------------------C--------------------------------------AGGCTAA--------AAGCAATCAGCAAACA-GT-----CGGCTGTA-AAAAGGACTCG--------GAAAAT----G---GGAAAATCGGG--GCGAGAAAAAATT-------------------------------------TGAAATAAAA-GGAA--------AGAGG-----GGG--CTG------------------------------------CTGGTGTTGTTGTTG------------------------------------------------------C-------TGCTGTTGC---------TTTTCCTTTGGCTGGGAAATTCAGTGCCGTGT---------------------GTTTTGTTTT--CACATTT-CCCT-CT-----------------CTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTTAACATT
droTak1 scf7180000413998:5260-5590 - GA---AATCGGGTTCTTTGCCCGGATTGC--AATTC-----AGACCGAA----AGAGAGTA---GTTCGGCACGGTTGCA-GGTTTGCACTT-------------G------CA------------------GC------AGCAGCAGCAGAG------G---CAG---------------------------------------TG---GCA----GCTA--AAATCAACAAAATCAAC-------A---AAG-------------------GC--AACA---AAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------G-----------------------G--TCGAGAAAAAAGG-----GG------------------------------------------------------G--------GTG--GTG----------------------G--------GC--------------------------------------------------------------------------------TACT--------------------GCTGGCTGGGAAATTC-GTGT--TGTGCTTGTGT--------------TTTTGTTTT--CACATTT-CCCT-C------------------TTTTTTTTA-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T-----T--TTGTTGGTGT-CAA------AGTTAAACATT
droEle1 scf7180000491023:377268-377724 - GG---AATCGGAATC-TTGCCCGGATTGT--GAAGC-----AGACTGAG----AG--AG-G---GTTCGGCACGTTTCCA-AGTTTACACTT-------------G------CAGCAGC------------AGCAGCAGCAGCAGCAGCAA------------------CAGCAAC------AGCAGCAGCA---GAACTAG---TG---GCA----GCAA--AAATCAACAAAATCAGC-------A---AAG-------------------GC--AACA---AAGAC---------------------GGTGGGCAAAAAAGCAAAAAGCAATCAGCAAACA-GT-----CGGATGTA-AAAAGGACTCG--------GAAAAT----A---GGAAAATCGGG--GTG--CAAAAACGG--------------------------------------------------------------------GGGGA-CTGGACTGGACTCGATTGA-----AGGGCAGGCG---------TGTTGTTGTTG------------------------------------------------------C-------TGCT---GC---------TACT---GTGGCTGGGAAATTT-CTGT--TGTG-TTGTGTTGTGTTGTGTGGTGTTTTGTTTT--CCCATTTTCCCT-TTCTTTTTTTTTTTT----TTTTTTTTGTTTGTACTAAGTTTATTTTTAGTGCTTGCGTGCGGTAA-----T-----T--------TTGTTGGTGTACAA------AGTTAAACATT
droRho1 scf7180000779914:782635-783049 + GG---AATCGGAATC-TTGCCCGGATTGT--GAAGC-----AGGCTGAG----AG--GCAG---GTTCGGCACGATTCCA-AGTTTACACAT-------------G------CAGCAGC------------AGCAGCAGCATCAT------------------CAGCAGCAGCAGC---AATAGCAG---CA---GCAGCAA---TT---GCA----GCAA--AAATCAACAAAATCAAC-------A---AAG-------------------AC--AACA---ACGAT---------------------GGTGGACAAA--------AAGCAATCAGCAAACA-GT-----CGCTTCTA-AAAAGGACTTG--------GAAAAT----A---GGAAAATGAATAGGCG--GAAAAACGG--------------------------------------------------------------------GGCG--CTGG------A----CTGA-----AGGGCAGTCGTGTTGTTGTTGTTGTTGTTG------------------------------------------------------CTGC-TGCTACT---GC---------TGCT---TTGGCTGGGAAATTT-GTGT--TTTG--------------TGTGGTGTTTTGTTTT--TACATTT-CCT---------------------CTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGG-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACATT
droFic1 scf7180000454050:591189-591646 - GG---AATCGGAATC-TTGCCCGGATTGT--AAAGC-----AGACAAACAGAGAGAGAGTGTGTGTTCGGCACGGTTCCA-AGTTTACACTT-------------G------CAACAGC------------AGCAACAGCAACAG------------------CAACAGCAGCAGTGGCAATGGCAG---TAATGGCAGCAA---TG---GCA----GCTA--AAATCAACAAAATCAAC-------A---AAG-------------------GC--AACA---AAGAC---------------------GCTGGGCAAA--------AAGCAATCAGCAAACA-CT-----AGGCTGTA-AAAAGGACTCG--------CAAAATAGAA-----AAAAATCG--------------------------------------------------------------------------------------------CTG------------CTGA-----AGGGCAGTT-TCT------TTTTGTTGTTGTTGCTGTTTTTGCTGCTACTGTTGCTGTTGTTGTTGTTGCTGTTATTGTTGTTGCTG-TTGCCACT---GC---------TGCT---GTGGCTGGGAAATTT-ACGT--TGT---------------------GTTTTGCTCT--CACATTT-CCCT-GT------------TTTTATTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACATT
droKik1 scf7180000302621:22065-22467 + GA---CAACGCA-----TCTCCGGATTCT--CGGGAAAAACGGAATCC-ATTCAG----------TGCGTTTCGGTTCCAAAGTTGACACTCTCTCTCACGTCTCG---CTGCA------------------GC------TTTCT---TTG------------CGGGGG---AAAA---ATCAACAA------------------AAGCGGCA----ATAAAAAAATATACAA------------------AAA-------------------CC--AACA----------------------------------AAAAA--------AAGCAATCAGCAAACA-AAGTTGACAGTTGTG-AAAAGGACTCGC------TGAAAAT----GGCTGGAAAATCGGGTGGA------------AA---------------------------------------------------------------------------------------TTGG-----AG--------GC-TACTA----------------------------------------------------------------------TGGCCATTGCTGTTGCTTTGAATTTTCCCCCCGCACAGAAGCTT-GTGT--T-TG-TTGT---------------GTTTTTCGCCTGCAATTTT-CTTT-TCATTT-----TCCT----GCTTTTTTG-------TTAG--TATTTTTAGTGCTTGCGTGCGG-AT-----TTTCTTTTATTTT--TTGTTGGTGT-CAA-----AAGTTAAACAAT
droAna3 scaffold_12916:6133650-6133826 + CA----------------------------------------------------------------------------------------------------------------GCAGC------------AGTAGCAGCAGCAGTAGCAG------------------C------------AGCAG------------------CGGCGGCA----GCAA--AAAAAAGAAAAGAAAAC-------G---ATGCATAGTTAGAGGTTTGTGGGCGTAAC----GAGAA---------------------AGCGAACAAA--------AAGCTTTAGATAAAAA--T-----AGTTTCAC-AAAATGGCCCAA-------TATAGTGGAA-----ATTGGCAG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-CAA------GG--GGGTGTT
droBip1 scf7180000396499:43337-43460 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT--TCCATTT-CTTG-TTAT-TTTTGTTATTATTATTTTATTTT-------CAAG--TATATCTAGTGCTTGCGTGTGA-AAGTAACTATCATTTTTTTTGCTGGTTGGTGT-CAAAAAAAAAGTTCAACATT
dp5 XR_group6:9145163-9145326 - AG--------------------------------GC-----AGAGGGAGAGCCAGAGAGTG---GCAAGTAA----------G---TCAAGT-------------G------CAGCAGC------------ATCAACGGCAGCAG------------------CAGCAGCAGCAGC------AGCAG------------------TAGCAGCA----GCAG--CA-GCAGCAGCAGCAGCAGT----T---GTT-------------------GC--AACATGAAGTGC---------------------AGCCGCCAT---------AAACGAGCTGCAAAAC-AT-----GGATTGGA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_9:532138-532273 - TG-------------------------------------------------------------------------------------CAA-------------------------GTGC------------AGC------AGCAGCAGCAGCA------GCAGCAATAGCGGCAAC------------------------------------A-------------GCAACAGAAGTAGC-------AG--CAG-------------------CA--GCCGCAACA--G---------------------GGTGGAAAAG--------GAGGCAGCGGCAGAG------------TGGCA-GCAGTGGCTCA--------AAGAA-----A---GGAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAAACAA-
droWil2 scf2_1100000004943:13735205-13735333 + GTCAGAATCG------------------------------------------------------------------------------------------------------TAACCGC------------AACCGCAGCAGCAGCAGCAA------------CAAC------------------AA------------------CGACAGCA----GCAA--AAACA-GTCA---AGGACACAAACAAAACAG-------------------GC--ATCTCAA---------------------------GTAGGCCAG-T------GGCAAATAAACAAACA-CT-----CGATTGCC-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13047:8930809-8930958 + TT-------------------------------------------------------------------------------------------------------G------CCGTTGCTGTTGCCGGTGCAGC------------AGCAGCAGCAGCGA---CAGCAG---AAAA---AATAACAA------------------CAACAACAAGTTGCAA-AACACCAAC---------------------------------------------------GAAGCGC---------------------AGCGAGCAAA--------AATCGCCCAGCAAAAA----------------------AAGTGG--------CAAAAT----A---GCAACAACC--TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------AG----ACCGA
droMoj3 scaffold_6496:6032781-6032976 - TT------------------------------------------------------------------------------------GCAA-------------------------GTGC------------AGC------AGCAGCAGCAGCA------GCAGCAGCAGAGTCAA----------AA------------------TGGCAGCAGATTGCCA--GGATAAAGTATGTTGAA-------AG--CAT-------------------GC--GTCACAAAAGGACGCAGTCAGAGCAGTTGAGACAGAGAGCGAG--------AGAGAGAG------------------------------------------------------A---GAGAGAGCG-------------------------------------------------------------------------AGAG-----AGGG-GGGCATAGA------G----ATAGAGTA-AG--------AC-TT--------------G------------------------------------------------------CTGATTGCCACT---GT---------TGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:7597789-7597946 + AC---A------------------------------------------------------------------------------------------------------------GCAGC------------AGCAACAACAGCAG------------------CAGCAGCAGCAGC------AGCAG------------------CAGCAGCA----GCAA--CAA-CAACAACAACAACAAC----A---ACA-------------------AC--AACA---ACAAC---------------------CGCAGCCAAA--------TATTAAATATGAACCGGGT-----CAATCGCA-AAAGAAGC----------------------------GCATTT--TGGC------------CATGG-CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------AG----CGAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GG---AATCGGAATC-TTGCCCGGATTGC--AAAGC-----GGACTGGGAGTGAGAGAGTG---GTTCGTCA---------------CACTT-------------G------CAGTTGCAGTTGC------AGC------AGCAGCAGCAGCA------G------------------------TAG------------------TGGCAGCA----GCAA--AAATCAACAAAATCAAC-------AA--AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------CAAAAT----A---GGAAAATCG--TGGC------------AAGGG-GCG-------------------------------------------------------AGGGGGGG--TTGG-----AT----TTGGTGTGTAG--------GC-TA--------------G------------------------------------------------------CTGCTTGCCACT---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGC--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TCA----------------TTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................ATTGC--AAAGC-----GGACTGGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GT-----CGGTTGTA-AAAAGGACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
........................ATTGC--AAAGC-----GGACTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
................TTGCCCGGATTGC--AAAGC-----GGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...........................GC--AAAGC-----GGACTGGGAGTGAGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
...........................GC--AAAGC-----GGACTGGGAGTGAGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGA-AA-----T-----T--------TTGTTGGTGT-C...................1911.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................AACA-GT-----CGGTTGTA-AAAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.........................TTGC--AAAGC-----GGACTGGGAGTGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
...............................................................................................................................................................................................................GCAGCA----GCAA--AAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1560.17100000000001000000
.................................................................................................................AGTTGCAGTTGC------AGC------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
GG---AATCGGAATC-TTGCCCGGATTGC--AAAGC-----GGACTGGGAGTGAGAGAGTG---GTTCGTCAC---------------ACTT-------------ACAGTTGCA------------------GC------AGCAGCAGCAGCA------G------------------------TAG------------------TGTCAGCA----GCA---AAATCAACAA------------------AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------CAAAAT----A---GGAAAATCG--TGGC------------AAGGGGGCGGGGGGGATTTGGTGTGTAAAAAGGACTCGCAA-AATAGGAAAATCGTGGC-----AAGG-GGGCGGGGG---GGAT----TTGGTGTGTAG--------GC-------------------------------------------------------------------------TGCTTGCCACT---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGC--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TCA-------------------TTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................GCAGCAGCA------G------------------------TAG------------------TGTCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040202
................................................................................................................................................GCAGCAGCA------G------------------------TAG------------------TGTCAGCA----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030210
..................................................................................................................................................................................................................................................................................C--AACACAAAAGAC---------------------GGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...............................................................................................................................................AGCAGCAGCA------G------------------------TAG------------------TGTCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
....................................................................................................................................................................................................................A----GCA---AAATCAACAA------------------AAG-------------------GC--AACACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................................G--TGGC------------AAGGGGGCGGGGGGGAT..................................................................................................................................................................................................................................................................................................................................................................................................2221.0021001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CA..................2511.0011000
..................................................................................................................................................AGCAGCA------G------------------------TAG------------------TGTCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.................................................................................................................................................................................................................................ATCAACAA------------------AAG-------------------GC--AACACAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................GCAGCAGCA------G------------------------TAG------------------TGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
....................................................................................................................................................................................................................................AACAA------------------AAG-------------------GC--AACACAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.............................................................................................................................................GCAGCAGCAGCA------G------------------------TAG------------------TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
..................................................GTGAGAGAGTG---GTTCGTCAC---------------ACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
...............................................................................................................................................AGCAGCAGCA------G------------------------TAG------------------TGTCAGTT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.....AATCGGAATC-TTGCCCGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..................................GC-----GGACTGGGAGTGAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGC-----AAGG-GGGCGGGGG---GGAT----..........................................................................................................................................................................................................................................................................................................................2221.0021001
.....................................................................................................................................C------AGCAGCAGCAGCA------G------------------------TAG------------------TGTCAGCA----A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
dm3
GG---AATCGGAATC-TTGCCCGGATTGCATAGAGC-----GTACTGGGAGTGAGAGAGTG---GTTCGTCAC---------------ACTT-------------G------CAGTTGCAGTTGC------AGC------AGCAGCAGCAGCA------GCAGCAGCAGC-------------GTAG------------------TGGCAGCA----GCAA--AAATCAACAAAATCAAC-------AA--AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------GAAAAT----G---GGAAAATCG--TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----CTGGTGTGTAG--------GC-TA--------------G------------------------------------------------------CTGCTTGCCACT---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGC--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TCAT-T-------------TTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................G--TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----C.........................................................................................................................................................................................................................................................................................................................22130.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000200000000100000000000000000000000002300102000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000013020002000000000000000010000000000100001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----C.........................................................................................................................................................................................................................................................................................................................21111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000011110000000000000000000000000000000510000000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002311000000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000110111000000
........................................................................................................................................................A------GCAGCAGCAGC-------------GTAG------------------TGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000000010100000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TGGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100010100000000000000000000000000000000000000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000010000000000000000000000000000000100000000000
..................GCCCGGATTGCATAGAGC-----G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000200000000000000
.................TGCCCGGATTGCATAGAGC-----G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................A------GCAGCAGCAGC-------------GTAG------------------TGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000100
......................................................................................................................................................GCA------GCAGCAGCAGC-------------GTAG------------------TGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000
........................................................................................................................................................A------GCAGCAGCAGC-------------GTAG------------------TGGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGCAGCA------GCAGCAGCAGC-------------GTAG------------------TGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
........................................................................................................................................................A------GCAGCAGCAGC-------------GTAG------------------TGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................A------GCAGCAGCAGC-------------GTAG------------------TGGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----CT........................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000
.....................................................................................................................................................AGCA------GCAGCAGCAGC-------------GTAG------------------TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGCTTGCGTGCGA-AA-----..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
GG---AATCGGAATC-TTGCCCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTACTGGGAGTGAGAGAGTG---GTTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTGCTTGCGTGCGA-G....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCGTGCGA-AA-----T-----T--------TTGTT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................GCAGCAGCAGC-------------GTAG------------------TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----..........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................................................................................GCA------GCAGCAGCAGC-------------GTAG------------------TGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AAAT----G---GGAAAATCG--TGGG------------AAGGATC............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................AGCA------GCAGCAGCAGC-------------GTAG------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----C.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................G--TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................AAC-------AA--AAG-------------------GC--AACACAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.............................ATAGAGC-----GTACTGGGAGTGAGAGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................CA------GCAGCAGCAGC-------------GTAG------------------TGGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................AGCAGCA------GCAGCAGCAGC-------------GTAG------------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................ACTGGGAGTGAGAGAGTG---GTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................TTCGTCAC---------------ACTT-------------G------CAGTTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................ATAGAGC-----GTACTGGGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................GCAGCAGC-------------GTAG------------------TGGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................G--TGGG------------AAGGGGGCG-------------------------------------------------------------CG--GTGG------G----CC........................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................A------GCAGCAGCAGC-------------GTAG------------------TGGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................A------GCAGCAGCAGC-------------GTAG------------------TGGCAGTT----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................................................................................................................................................................................................................................................................AGGACTCG--------GAAAAT----G---GGAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................AGCA------GCAGCAGCAGC-------------GTAG------------------TGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................GTACTGGGAGTGAGAGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GG---AATCGGAATC-TTGCCCGGATTG---AAGGC-----GGACTGGGAGTGAGAGAGTG---GTTCGTCA---------------CACTT-------------G------CAGTTGCAGCAGC------AGC------AGCAGCAGCAG------------CAGTGGCAGCAGC------AGCAG------------------TGGCAGCA----GCGA--AAATCAACAGAATCAAC-------A---AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCGGAAGCTCGGAAAAT----A---GGAAAATCGGG--GCGACGAAAAACG-------------------------------------T----------------------GG--------GGG--GTG------------------T-------------C-TG--------------C------------------------------------------------------CTGCTTGCCACC---GC---------TGCT-CGCTGGCTGGGAAATTC-GTGT--TGT---------------------GTTTTGTTTT--CACATTT-CCCT-TC-----------------CTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............ATC-TTGCCCGGATTG---AAGGC-----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
............................................................................................................................................................................................................................................CAAC-------A---AAG-------------------GC--AACACAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.....................................................................................................................................................................GTGGCAGCAGC------AGCAG------------------TGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
....................................................................................................................................................................AGTGGCAGCAGC------AGCAG------------------TGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................TTCGTCA---------------CACTT-------------G------CAGTTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
............................................................................................................................................................................CAGC------AGCAG------------------TGGCAGCA----GCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..........................TG---AAGGC-----GGACTGGGAGTGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..........................................................................................................................AGC------AGC------AGCAGCAGCAG------------CAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.1010000010
...................................................................................................................................AGC------AGCAGCAGCAG------------CAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610100000
............................................................................................................................................AGCAGCAGCAG------------CAGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010
.......................................................................................................................AGCAGC------AGC------AGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
droYak3
GG---AA------TC-TTGCCCGGATTGC--CAAGC-----GGACTGGGAGTGAGAGCGTG---GTTCGTCA---------------CACTT-------------G------CAGTTGC------------AGCAGCAGCAGCAGTAGTAG------------TAGT------GGC------AATAG------------------TGGCAGCA----GCAG--AAATCAACAAAATCAAC-------A---AAG-------------------GC--AACACAAAAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGCTTGTGTGAAAGGACTCGG------GGAAAAT----A---GGAAAATCGGG--GCGAGGAAAAACG-A----------------------------------------------------------AGAGG-----GCG--GTG---------------------CG--------AC-TA--------------C------------------------------------------------------C-------TACTGCTGC---------TACT-CGCTGGCTGGGAAATTC-GTGT--TGTG-TTGTGT--------------TTTTGTTTT--CAAATTT-CCCT-TACTCT-------------TTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................GTAG------------TAGT------GGC------AATAG------------------TGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
................TTGCCCGGATTGC--CAAGC-----GGACTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000100000
.........................................................................................................................................AGCAGCAGTAGTAG------------TAGT------GGC------AATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...................................................................................................................................................GTAG------------TAGT------GGC------AATAG------------------TGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
AG---AATC-----T-TTGCCCGGATTCT--AAAGC-----GGACTGAG----AGAGAGTG---GTTCGGCACGGTTTCA-AGTTTACACTT-------------G------CAACAGC------------AGCAGCAGCAGCAG------------------CAGCGGCAGCTGC------AGCAG------------CAATAGTGG--GCA----GCAA-AAAATCAACAAAATCAAC-------A---AAG-------------------GC--AACA---AAGGC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTAG--------GAAAAT----A---GAAAAATCGGGTGGCGAAT-AAAACA-----------------------------------------------GGGAAATC-TAGCAGAGG-----GGG--CTA---------------------------G---CCT------TCTTGTTGTTGCTACTGCTACGGCTGCCACCG---------------------------------CCA-CTGCCACT---GC---------TGCTTCTGTGGCTGGGAAATTT-GT-----TT---------------------GTTGTGCTTT--CACATTT-CCCTTACAT-------------TCCTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACATTSizeHit CountTotal NormTotal
No Reads
droBia1
GA---AATCGGAATC-TAGCCCGGATTGT--GATTC-----AGACTGAC----AGAGAGTA---ATTCGGCACGGCTCCA-AGTTTACACTT-------------G------CA------------------GC------AGCAGCAGCAG------------------------------------------------------------CA----GCAA--AAATCAACAAAAGC-------------------------------------C--------------------------------------AGGCTAA--------AAGCAATCAGCAAACA-GT-----CGGCTGTA-AAAAGGACTCG--------GAAAAT----G---GGAAAATCGGG--GCGAGAAAAAATT-------------------------------------TGAAATAAAA-GGAA--------AGAGG-----GGG--CTG------------------------------------CTGGTGTTGTTGTTG------------------------------------------------------C-------TGCTGTTGC---------TTTTCCTTTGGCTGGGAAATTCAGTGCCGTGT---------------------GTTTTGTTTT--CACATTT-CCCT-CT-----------------CTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTTAACATTSizeHit CountTotal NormTotal
No Reads
droTak1
GA---AATCGGGTTCTTTGCCCGGATTGC--AATTC-----AGACCGAA----AGAGAGTA---GTTCGGCACGGTTGCA-GGTTTGCACTT-------------G------CA------------------GC------AGCAGCAGCAGAG------G---CAG---------------------------------------TG---GCA----GCTA--AAATCAACAAAATCAAC-------A---AAG-------------------GC--AACA---AAGAC---------------------GGTGGGCAAA--------AAGCAATCAGCAAACA-GT-----CGGTTGTA-AAAAGGACTCG--------G-----------------------G--TCGAGAAAAAAGG-----GG------------------------------------------------------G--------GTG--GTG----------------------G--------GC--------------------------------------------------------------------------------TACT--------------------GCTGGCTGGGAAATTC-GTGT--TGTGCTTGTGT--------------TTTTGTTTT--CACATTT-CCCT-C------------------TTTTTTTTA-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T-----T--TTGTTGGTGT-CAA------AGTTAAACATTSizeHit CountTotal NormTotal
No Reads
droEle1
GG---AATCGGAATC-TTGCCCGGATTGT--GAAGC-----AGACTGAG----AG--AG-G---GTTCGGCACGTTTCCA-AGTTTACACTT-------------G------CAGCAGC------------AGCAGCAGCAGCAGCAGCAA------------------CAGCAAC------AGCAGCAGCA---GAACTAG---TG---GCA----GCAA--AAATCAACAAAATCAGC-------A---AAG-------------------GC--AACA---AAGAC---------------------GGTGGGCAAAAAAGCAAAAAGCAATCAGCAAACA-GT-----CGGATGTA-AAAAGGACTCG--------GAAAAT----A---GGAAAATCGGG--GTG--CAAAAACGG--------------------------------------------------------------------GGGGA-CTGGACTGGACTCGATTGA-----AGGGCAGGCG---------TGTTGTTGTTG------------------------------------------------------C-------TGCT---GC---------TACT---GTGGCTGGGAAATTT-CTGT--TGTG-TTGTGTTGTGTTGTGTGGTGTTTTGTTTT--CCCATTTTCCCT-TTCTTTTTTTTTTTT----TTTTTTTTGTTTGTACTAAGTTTATTTTTAGTGCTTGCGTGCGGTAA-----T-----T--------TTGTTGGTGTACAA------AGTTAAACATTSizeHit CountTotal NormTotal
No Reads
droRho1
GG---AATCGGAATC-TTGCCCGGATTGT--GAAGC-----AGGCTGAG----AG--GCAG---GTTCGGCACGATTCCA-AGTTTACACAT-------------G------CAGCAGC------------AGCAGCAGCATCAT------------------CAGCAGCAGCAGC---AATAGCAG---CA---GCAGCAA---TT---GCA----GCAA--AAATCAACAAAATCAAC-------A---AAG-------------------AC--AACA---ACGAT---------------------GGTGGACAAA--------AAGCAATCAGCAAACA-GT-----CGCTTCTA-AAAAGGACTTG--------GAAAAT----A---GGAAAATGAATAGGCG--GAAAAACGG--------------------------------------------------------------------GGCG--CTGG------A----CTGA-----AGGGCAGTCGTGTTGTTGTTGTTGTTGTTG------------------------------------------------------CTGC-TGCTACT---GC---------TGCT---TTGGCTGGGAAATTT-GTGT--TTTG--------------TGTGGTGTTTTGTTTT--TACATTT-CCT---------------------CTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGG-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACATTSizeHit CountTotal NormTotal
No Reads
droFic1
GG---AATCGGAATC-TTGCCCGGATTGT--AAAGC-----AGACAAACAGAGAGAGAGTGTGTGTTCGGCACGGTTCCA-AGTTTACACTT-------------G------CAACAGC------------AGCAACAGCAACAG------------------CAACAGCAGCAGTGGCAATGGCAG---TAATGGCAGCAA---TG---GCA----GCTA--AAATCAACAAAATCAAC-------A---AAG-------------------GC--AACA---AAGAC---------------------GCTGGGCAAA--------AAGCAATCAGCAAACA-CT-----AGGCTGTA-AAAAGGACTCG--------CAAAATAGAA-----AAAAATCG--------------------------------------------------------------------------------------------CTG------------CTGA-----AGGGCAGTT-TCT------TTTTGTTGTTGTTGCTGTTTTTGCTGCTACTGTTGCTGTTGTTGTTGTTGCTGTTATTGTTGTTGCTG-TTGCCACT---GC---------TGCT---GTGGCTGGGAAATTT-ACGT--TGT---------------------GTTTTGCTCT--CACATTT-CCCT-GT------------TTTTATTTTTTTTT-------CAAG--TATTTTTAGTGCTTGCGTGCGA-AA-----T-----T--------TTGTTGGTGT-CAA------AGTTAAACATTSizeHit CountTotal NormTotal
No Reads
droKik1
GA---CAACGCA-----TCTCCGGATTCT--CGGGAAAAACGGAATCC-ATTCAG----------TGCGTTTCGGTTCCAAAGTTGACACTCTCTCTCACGTCTCG---CTGCA------------------GC------TTTCT---TTG------------CGGGGG---AAAA---ATCAACAA------------------AAGCGGCA----ATAAAAAAATATACAA------------------AAA-------------------CC--AACA----------------------------------AAAAA--------AAGCAATCAGCAAACA-AAGTTGACAGTTGTG-AAAAGGACTCGC------TGAAAAT----GGCTGGAAAATCGGGTGGA------------AA---------------------------------------------------------------------------------------TTGG-----AG--------GC-TACTA----------------------------------------------------------------------TGGCCATTGCTGTTGCTTTGAATTTTCCCCCCGCACAGAAGCTT-GTGT--T-TG-TTGT---------------GTTTTTCGCCTGCAATTTT-CTTT-TCATTT-----TCCT----GCTTTTTTG-------TTAG--TATTTTTAGTGCTTGCGTGCGG-AT-----TTTCTTTTATTTT--TTGTTGGTGT-CAA-----AAGTTAAACAATSizeHit CountTotal NormTotal
No Reads
droAna3
CA----------------------------------------------------------------------------------------------------------------GCAGC------------AGTAGCAGCAGCAGTAGCAG------------------C------------AGCAG------------------CGGCGGCA----GCAA--AAAAAAGAAAAGAAAAC-------G---ATGCATAGTTAGAGGTTTGTGGGCGTAAC----GAGAA---------------------AGCGAACAAA--------AAGCTTTAGATAAAAA--T-----AGTTTCAC-AAAATGGCCCAA-------TATAGTGGAA-----ATTGGCAG--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC-CAA------GG--GGGTGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................AGCAG------------------C------------AGCAG------------------CGGCGGCA----GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.201000100
...............................................................................................................................................................................................................................AAAAAAGAAAAGAAAAC-------G---A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141010000
.....................................................................................................................................................AG------------------C------------AGCAG------------------CGGCGGCA----GCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.091100000
....................................................................................................................................................CAG------------------C------------AGCAG------------------CGGCGGCA----GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.061000001
............................................................................................................................................AGCAGTAGCAG------------------C------------AGCAG------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT--TCCATTT-CTTG-TTAT-TTTTGTTATTATTATTTTATTTT-------CAAG--TATATCTAGTGCTTGCGTGTGA-AAGTAACTATCATTTTTTTTGCTGGTTGGTGT-CAAAAAAAAAGTTCAACATTSizeHit CountTotal NormTotal
No Reads
dp5
AG--------------------------------GC-----AGAGGGAGAGCCAGAGAGTG---GCAAGTAA----------G---TCAAGT-------------G------CAGCAGC------------ATCAACGGCAGCAG------------------CAGCAGCAGCAGC------AGCAG------------------TAGCAGCA----GCAG--CA-GCAGCAGCAGCAGCAGT----T---GTT-------------------GC--AACATGAAGTGC---------------------AGCCGCCAT---------AAACGAGCTGCAAAAC-AT-----GGATTGGA-A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................GC------AGCAG------------------TAGCAGCA----GCAG--CA-GCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28100.1010100000000
..........................................................................................................................................................................AGCAGC------AGCAG------------------TAGCAGCA----GCAG--CA-GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.0810001000000
...............................................................................................................................................AG------------------CAGCAGCAGCAGC------AGCAG------------------TAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
...............................................................................................................................................................................C------AGCAG------------------TAGCAGCA----GCAG--CA-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
................................................................................................................................................................................................................................A-GCAGCAGCAGCAGCAGT----T---.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
TG-------------------------------------------------------------------------------------CAA-------------------------GTGC------------AGC------AGCAGCAGCAGCA------GCAGCAATAGCGGCAAC------------------------------------A-------------GCAACAGAAGTAGC-------AG--CAG-------------------CA--GCCGCAACA--G---------------------GGTGGAAAAG--------GAGGCAGCGGCAGAG------------TGGCA-GCAGTGGCTCA--------AAGAA-----A---GGAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGAAACAA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GTCAGAATCG------------------------------------------------------------------------------------------------------TAACCGC------------AACCGCAGCAGCAGCAGCAA------------CAAC------------------AA------------------CGACAGCA----GCAA--AAACA-GTCA---AGGACACAAACAAAACAG-------------------GC--ATCTCAA---------------------------GTAGGCCAG-T------GGCAAATAAACAAACA-CT-----CGATTGCC-AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................GCAGCAGCAA------------CAAC------------------AA------------------CGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.12200020
...............................................................................................................................................AGCAGCAA------------CAAC------------------AA------------------CGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
droVir3
TT-------------------------------------------------------------------------------------------------------G------CCGTTGCTGTTGCCGGTGCAGC------------AGCAGCAGCAGCGA---CAGCAG---AAAA---AATAACAA------------------CAACAACAAGTTGCAA-AACACCAAC---------------------------------------------------GAAGCGC---------------------AGCGAGCAAA--------AATCGCCCAGCAAAAA----------------------AAGTGG--------CAAAAT----A---GCAACAACC--TCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------AG----ACCGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................AGCAGCGA---CAGCAG---AAAA---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................GTTGCTGTTGCCGGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................AGCAGCAGCAGCGA---CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................GCAGC------------AGCAGCAGCAGCGA---CAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TT------------------------------------------------------------------------------------GCAA-------------------------GTGC------------AGC------AGCAGCAGCAGCA------GCAGCAGCAGAGTCAA----------AA------------------TGGCAGCAGATTGCCA--GGATAAAGTATGTTGAA-------AG--CAT-------------------GC--GTCACAAAAGGACGCAGTCAGAGCAGTTGAGACAGAGAGCGAG--------AGAGAGAG------------------------------------------------------A---GAGAGAGCG-------------------------------------------------------------------------AGAG-----AGGG-GGGCATAGA------G----ATAGAGTA-AG--------AC-TT--------------G------------------------------------------------------CTGATTGCCACT---GT---------TGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AC---A------------------------------------------------------------------------------------------------------------GCAGC------------AGCAACAACAGCAG------------------CAGCAGCAGCAGC------AGCAG------------------CAGCAGCA----GCAA--CAA-CAACAACAACAACAAC----A---ACA-------------------AC--AACA---ACAAC---------------------CGCAGCCAAA--------TATTAAATATGAACCGGGT-----CAATCGCA-AAAGAAGC----------------------------GCATTT--TGGC------------CATGG-CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------AG----CGAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................TATGAACCGGGT-----CAATCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
AC---A------------------------------------------------------------------------------------------------------------GCAGC------------AGCAACAACAGCAG------------------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05110
...................................................................................................................CAGC------------AGCAACAACAGCAG------------------CAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05110
......................................................................................................................................AACAACAGCAG------------------CAGCAGCAGCAGC------AGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05110

Generated: 05/18/2015 at 06:13 PM