ID:

dsi_16736

 Coordinate:

node_2983:14108-14257 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.3 -25.3 -25.3

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
MAX_I-intLTRPao+

Sense Strand Reads

ACGCTGCTGATGGCCCCAATCACACGAAGAAATACCCTCAGCCAAAGTTGAGTGGGCTTGGATTTGTGAGGCGCGCCTTGAAATCTCCCCATTAACTAAGAATTCAAGCGCTCACTCAAATCGCTTTGAATTTCATCCAAATGTGGCTCGCTCCGTTCATCATCCGTTCAGAAATGTTTATGCAGGATATTTGGTTGCAGGACTTAGGCTGGGACGATAAACTTCCCACCGAAGTGAATCAGAGGTGGCA
****************************************************(((((..((((..((((((((.(((............((((......(((((((((((...........))))).))))))......)))).))).))))....)))).)))))))))................**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 M053
female body
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGA.................................... 25 1 7 27.86 195 89 36 41 29 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGAC................................... 26 1 7 16.00 112 38 24 26 24 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGA.................................... 24 1 8 6.13 49 36 3 5 5 0 0 0 0 0
...........................................................................................................................................................................................TATTTGGTTGCAGGACTTAGGCTGGGA.................................... 27 0 1 6.00 6 3 2 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGG..................................... 24 1 9 5.33 48 19 2 14 13 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGAC................................... 25 1 8 4.25 34 20 5 3 6 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAA.............................. 24 1 8 4.00 32 5 7 6 12 2 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATA............................... 23 1 8 3.88 31 3 21 4 3 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGAT................................ 22 1 8 3.63 29 5 9 5 10 0 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAAA............................. 25 0 1 3.00 3 2 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATA............................... 23 0 1 3.00 3 0 1 0 0 2 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGA.................................... 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGGACTTAGGCTGGGACGATAAAC............................ 27 0 1 3.00 3 1 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAA.............................. 24 0 1 3.00 3 0 0 0 0 3 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGAT................................ 22 0 1 3.00 3 0 0 0 0 3 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGAC................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTG....................................... 22 1 9 2.33 21 6 9 5 1 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGA.................................... 23 1 8 2.25 18 16 0 2 0 0 0 0 0 0
.....................................TCAGCCAAAGTTGAGTGGGCTTGGA............................................................................................................................................................................................ 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGACAT.............................. 24 2 1 2.00 2 0 0 0 0 2 0 0 0 0
..................................................................................................................................................................TCCGTTCAGAAATGTTTATGCAGG................................................................ 24 0 1 2.00 2 0 0 0 1 0 0 0 0 1
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAAT............................. 25 1 1 2.00 2 0 0 0 0 2 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAGA............................. 25 1 1 2.00 2 0 0 0 0 2 0 0 0 0
....................................................TGGGCTTGGATTTGTGAGGCGCGCCT............................................................................................................................................................................ 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................................TAAACTTCCTACCGAAGTGAATCAGAGG..... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGACGA................................. 26 1 8 1.88 15 1 1 5 8 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGG.................................... 25 1 3 1.67 5 1 0 2 1 0 0 1 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGACGAT................................ 23 1 8 1.63 13 4 4 3 2 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGG..................................... 23 1 10 1.50 15 11 0 2 2 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGACGATA............................... 24 1 8 1.38 11 4 2 4 1 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAAT............................. 25 2 8 1.38 11 2 6 1 2 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGACGA................................. 27 1 8 1.25 10 2 0 8 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGA................................. 21 1 8 1.13 9 2 2 0 5 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGG...................................... 23 1 9 1.11 10 2 1 7 0 0 0 0 0 0
..................................................................................................................................................................TCCGTTCAGAAATGTTTATGCAGTA............................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAAAC............................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACTTCCCACCGAAGTGAATCAGAGGA.... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGAC................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAAA............................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGACT............................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGAC................................... 19 1 8 1.00 8 1 4 2 1 0 0 0 0 0
..........................................................................................TTTAACTAAGAATTCAAGCGTTCACTA..................................................................................................................................... 27 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................AGTGGGCTTGGATTTGTGAGGC.................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGACGA................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................ATGCAGGATATTTGGTT...................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................TCCGTTCAGAAATGTTTATGCAGGA............................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGG..................................... 24 0 3 1.00 3 1 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................TATTTGGTTGCAGGACTTAGGCTGGG..................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................ATCATCCGTTCAGAAATG.......................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................TGCAGGACTTAGGCTGGGA.................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................TGTTTATGCAGGATATTTGGTTGC.................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................TATTTGGTTGCAGGACTTAGGCT........................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................TCAGCCAAAGTTGAGTG.................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................TTAGGCTGGGACGATAAACTTCCCAC..................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAC.............................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATATA............................. 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAAAA............................ 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................TCCGTTCAGAAATGTTTATGCA.................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATTT.............................. 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................TAAACTTCCCACCGAAGTGAATCAGAG...... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGGACTTAGGCTGGGACGT................................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................CCGTTCAGAAATGTTTATGCAGTA............................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGGTTT.............................. 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGTTAT.............................. 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAGA............................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................TGGGCTTGGATTTGTGAGGCGCGC.............................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................TCATCCAAATGTGGATCGCTCCGTT............................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGACGA................................. 22 1 8 0.88 7 1 2 0 4 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGACG.................................. 25 1 8 0.88 7 0 0 4 3 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGACGATAA.............................. 25 1 8 0.75 6 4 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGACG.................................. 27 1 7 0.71 5 2 0 2 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGACGA................................. 28 1 7 0.71 5 0 1 1 3 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAT.............................. 24 2 8 0.63 5 0 1 0 3 1 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGAC................................... 24 1 8 0.63 5 3 0 1 1 0 0 0 0 0
............................................................................................................................................................................................................TAGGGTGGGACGATAAA............................. 17 1 2 0.50 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATT............................... 23 2 8 0.50 4 0 2 1 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGC......................................... 20 1 9 0.44 4 0 3 0 1 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGG..................................... 22 1 10 0.40 4 4 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGT.................................... 24 2 10 0.40 4 4 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGA.................................... 18 1 8 0.38 3 2 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGACGAT................................ 28 1 8 0.38 3 0 1 1 1 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGACG.................................. 26 1 8 0.38 3 1 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTG....................................... 22 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGG.......................................... 19 0 3 0.33 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................TTAGGCTGGGACGATA............................... 16 0 9 0.33 3 0 0 0 0 0 3 0 0 0
.............................................................................................................................................................................................TATGGTTGCAGGACTTAGGCTGGA..................................... 24 2 3 0.33 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGGACTTAGGC......................................... 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGT.................................... 25 2 9 0.33 3 3 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGT.................................... 23 2 10 0.30 3 3 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAAGACTTAGGCTGGGA.................................... 25 1 7 0.29 2 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAATC............................ 26 2 7 0.29 2 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAACTTAGGCTGGGA.................................... 20 1 8 0.25 2 0 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAACTTAGGCTGGGACGATA............................... 25 1 8 0.25 2 0 0 1 1 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGAA................................... 24 2 8 0.25 2 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGA.................................... 19 1 8 0.25 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATATT............................. 25 3 8 0.25 2 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGTTTGCAGAACTTAGGCTGGGAC................................... 25 2 8 0.25 2 0 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAACTTAGGCTGGGACGA................................. 23 1 8 0.25 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACG.................................. 20 1 8 0.25 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGAC................................... 20 1 8 0.25 2 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGT..................................... 24 2 9 0.22 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTAGGCTGGGACGATAA.............................. 17 0 9 0.22 2 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................................................................ACTTAGGCTGGGACGAT................................ 17 0 9 0.22 2 0 0 0 0 0 2 0 0 0
....................................................................................CTCCCCGTTAACTAATA..................................................................................................................................................... 17 2 5 0.20 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTG....................................... 21 1 10 0.20 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGT..................................... 22 2 10 0.20 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGT..................................... 23 2 10 0.20 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGAAA.................................. 27 3 7 0.14 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGACA.................................. 27 2 7 0.14 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TGTGGTTGCAGAACTTAGGCTGGGA.................................... 25 2 7 0.14 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGAA................................... 26 2 7 0.14 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGTA.................................... 25 2 7 0.14 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGACGAA................................ 29 2 7 0.14 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGACGC................................. 28 2 7 0.14 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGACT.................................. 27 2 7 0.14 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAATTTAGGCTGGGA.................................... 25 2 7 0.14 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGACGACT............................... 30 3 7 0.14 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCGGGGA.................................... 25 2 7 0.14 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAATTT........................... 27 3 7 0.14 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGT................................. 21 2 8 0.13 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGACTATAA.............................. 25 2 8 0.13 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGAG................................... 25 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGAGACGATA............................... 23 2 8 0.13 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGTC................................... 25 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAAGACTTAGGCTGGGACGATA............................... 23 1 8 0.13 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACTATAA.............................. 24 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAACT............................ 26 3 8 0.13 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGAGACGATAA.............................. 24 2 8 0.13 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGTCTGGGACGA................................. 26 2 8 0.13 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGAA................................ 22 2 8 0.13 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAATTTAGGCTGGGA.................................... 24 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAGT............................. 25 3 8 0.13 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................CTTGGTTGCAGAACTTAGGCTGGGACGA................................. 28 2 8 0.13 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAAGACTTAGGCTGGGACGATA............................... 28 1 8 0.13 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCCGGGA.................................... 24 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGATAATT............................ 26 3 8 0.13 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGACGATT............................... 24 2 8 0.13 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGACGAT................................ 27 1 8 0.13 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGACGATA............................... 28 1 8 0.13 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TTGTTGCAGAACTTAGGCTGGGACGA................................. 26 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGAGAT.............................. 24 3 8 0.13 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGAA.................................... 25 2 8 0.13 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGAACTTAGGCTGGGACGAT................................ 24 1 8 0.13 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGTACGT................................. 22 3 8 0.13 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGTA.................................... 23 2 8 0.13 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGGGACGAA................................ 27 2 8 0.13 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................CTTAGGCTGGGACGATA............................... 17 0 9 0.11 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................TGTTCATGCAGGATATTTGGTTGCAGA................................................. 27 2 9 0.11 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGTTTGCAGAACTTAGGCTGGGA.................................... 24 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGT...................................... 23 2 9 0.11 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGGAT................................... 26 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAAGACTTAGGCT........................................ 21 1 9 0.11 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................ACTTAGGCTGGGACGATA............................... 18 0 9 0.11 1 0 0 0 0 0 1 0 0 0
..................................................................TGAGCCGCGCCGTGGAATC..................................................................................................................................................................... 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTAGGCTGGGACGAT................................ 15 0 9 0.11 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGACGTTT............................... 23 3 9 0.11 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGC..................................... 24 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCT........................................ 21 1 9 0.11 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAGGCTGGGACGATA............................... 15 0 10 0.10 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGAAA.................................. 21 3 10 0.10 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................GTTGGTTGCAGAACTTAGGCTGGT..................................... 24 3 10 0.10 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................TCCGTTCAAAAATGTTTATGCAGGA............................................................... 25 1 10 0.10 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................TGGTTGCAGAACTTAGGCTGG...................................... 21 1 10 0.10 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTGTTGCAGAACTTAGGCTG....................................... 21 2 10 0.10 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGGCTGGGACGATAA.............................. 15 0 10 0.10 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAGGCTGGA..................................... 24 2 10 0.10 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGGAT................................... 25 2 10 0.10 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................CCGTTCAAAAATGTTTATGCAGGA............................................................... 24 1 10 0.10 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTTGGTTGCAGAACTTAG........................................... 18 1 10 0.10 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGG...................................... 22 1 10 0.10 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTGGTTGCAGAACTTAGGCTGGA..................................... 23 2 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTTTATGCAGGAGATTTGGTTGC.................................................... 24 1 11 0.09 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................TGTTTATGCAGGAGATTTGGTTGCA................................................... 25 1 11 0.09 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGAT................................... 20 2 11 0.09 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGAACTTAGGCTGGGT.................................... 19 2 11 0.09 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................ATGTTTATGCAGGAGGTTTGGTTG..................................................... 24 2 12 0.08 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................GCAGAACTTAGGCTGGGAT................................... 19 2 12 0.08 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................TGTTTATGCAGGAGATT........................................................... 17 1 16 0.06 1 0 0 0 0 0 1 0 0 0
....................................................TGGACCTGGATTTGTGA..................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AGTACTTAGGCTGGGCCA.................................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0
...........................................................GGTGTTCTGAGGCGCGCC............................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TGCGACGACTACCGGGGTTAGTGTGCTTCTTTATGGGAGTCGGTTTCAACTCACCCGAACCTAAACACTCCGCGCGGAACTTTAGAGGGGTAATTGATTCTTAAGTTCGCGAGTGAGTTTAGCGAAACTTAAAGTAGGTTTACACCGAGCGAGGCAAGTAGTAGGCAAGTCTTTACAAATACGTCCTATAAACCAACGTCCTGAATCCGACCCTGCTATTTGAAGGGTGGCTTCACTTAGTCTCCACCGT
****************************************************************(((((..((((..((((((((.(((............((((......(((((((((((...........))))).))))))......)))).))).))))....)))).)))))))))................**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M053
female body
 O001
Testis
 GSM343915
embryo
 M025
embryo
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 23 0 1 16.00 16 0 3 6 0 6 0 0 0 0 0 1
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAGTCTT............................................................................. 24 0 1 9.00 9 6 0 0 1 1 1 0 0 0 0 0
.............................................................................................................................................ACACCTAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 29 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GAGCGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 26 0 1 6.00 6 0 1 0 3 2 0 0 0 0 0 0
...................................................................................................................................................AGCGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 25 0 1 6.00 6 0 3 1 0 0 2 0 0 0 0 0
.................................................................................................................................................CTAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 25 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CTAGCGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 27 1 1 5.00 5 2 0 0 0 0 3 0 0 0 0 0
.................................................................................................................................................CGAGCGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 27 0 1 5.00 5 0 0 1 1 2 0 0 1 0 0 0
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAGTCTTTACAA........................................................................ 29 0 1 5.00 5 3 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................GAGGCAAGTAGTAGGCAAGTCT.............................................................................. 22 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GGCAAGTAGTAGGCAAGTCT.............................................................................. 20 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0
......................................................................................GGGGTAATTGATTCTTAAGTTCGCGAGT........................................................................................................................................ 28 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGAATCCGACCCTGCTATT.............................. 19 0 9 2.44 22 0 0 0 0 0 0 0 0 22 0 0
..................................................................................................................................................................AGGCAAGTCTTTACAAATACGTCATAT............................................................. 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................AGCGAGGCAAGTAGTAGGCAAGT................................................................................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGGCAAGTAGTAGGCAAGTCT.............................................................................. 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................GCGAGGCAAGTAGTAGGCAAGT................................................................................ 22 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
...........................................................................GGAACTTTAGAGGGGTAATT........................................................................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAGT................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................CCGAGCGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 28 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0
......................................................................................................................................................GAGGCAAGTAGTAGGCAAGTCTT............................................................................. 23 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................CGAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 25 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................ATACGTCCTATAAACCAACGTCCTGAAT............................................ 28 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0
.................................................................................TTAGAGGGGTAATTGATTCTTAAGT................................................................................................................................................ 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................AGCCACGTCTTGACAAATACGT.................................................................. 22 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
...........................................................................................................................................TTACACCTAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 31 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................ACACCGAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................TAAGTTCGCGAGAGGGTT................................................................................................................................... 18 2 2 1.50 3 0 0 0 0 1 2 0 0 0 0 0
................................................................................................................................................CCGAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TATAAACCAACGTCCTGAATCCGA........................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................GGGTAATTGATTCTTAAGTTCGCGAGT........................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAGTCTTT............................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................CGGAACTTTAGAGGGGTAATTGATTCT..................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGGCAAGTAGTAGGCAAGT................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................GAGGCAAGTAGTAGGCAAGT................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TCTGAGCGAGGCAAGTAGTAGGCAAG................................................................................. 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................CACCGAGGGAGGCAAGTAGTAGGCAAGT................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................GGAACTTTAGAGGGGTAATTGATTCTT.................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................CGCGAGTGAGTTTAGCGAAACT......................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................CGAACCTAAACACTCCGCGCGGAACTT........................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGCCATGAATCCGACCCTGCTAT............................... 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................GGGGTAATTGATTCTTAAGTTCGCGA.......................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................CAACGTCCTGAATCCGACCCTGCTATT.............................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................GTGCTTCTTTATGGGAGTCGGTTT............................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAG................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGTAAGTAGTAGGCAAGTCTTTACAA........................................................................ 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AAGTAGGGTTACACCGAGCGAGGCAAGT........................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAGCGAGGCAAGTAGTAGGCAAGTC............................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..CGACGACAACCGGGGTTAGTGTGCTTCT............................................................................................................................................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GAGGCAAGTAGTAGGCAAGTC............................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................................GAGGGGTAATTGATTCTTAAGTTCG............................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGACCCTGCTATTTGAAGGGTGGCT.................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................TAGTGTGCTTCTTTATGGGAGTCGGTTT............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAGTCTTTACAAAT...................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................GAGGGGTAATTGATTCTTAAGT................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................CGAGCGAGGCGAGTAGTAGGCAAGT................................................................................ 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................ACACCTAGCGAGGCAAGTAGTAGGCAAGTC............................................................................... 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................AGAGGGGTAATTGATTCTTAAGTTCGC............................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................TCGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................AGCGAAAATTAAAGTAGGTTTACAC......................................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGGATGGCTTCACTTAGTCTCCACCGT 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................AAGCGAAAATTAAAGTAGGTTTACACCG....................................................................................................... 28 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................CGAGGCAAGTAGTAGGCAAGTGT.............................................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................AGGCAAGTAGTAGGCAAGTCTTTACA......................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GAGGCAAGTAGTAGGCAAGTCTTTACAA........................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................AGGGGTAATTGATTCTTAAGTTCGC............................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................CACCGAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AGAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AGTAGGCAAGTCTTTACAAATACGTCC................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GAGGCAAGTAGTCGGCAAGTCTTTACAA........................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGCGAGGCAAGTAGTAGGCAAGTCT.............................................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................CCTAAACACTCCGCGCGGAACT......................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................TACGTCCTATAAACCAACGTCCTGAAT............................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................TTAGAGGGGTAATTGATTCTTAAGTT............................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................TAAAACTTTACAAATACGTCCTAT............................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACGAGCGAGGCAAGTAGTAGGCAAGT................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................GGTAATTGATTCTTAAGTTCGCGAGT........................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TTACACCTAGCGAGGCAAGTAGTAGGCA................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AACCAACGTCTTGAATCCGACCCTGCTAT............................... 29 1 8 0.75 6 0 0 6 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAACGTCTTGAATCCGACCCTGCTAT............................... 26 1 8 0.75 6 1 0 0 0 5 0 0 0 0 0 0
.............................................................................................................................................................................................AAACCAACGTCTTGAATCCGACCCTGCTAT............................... 30 1 7 0.71 5 0 0 4 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................ACCAACGTCTTGAATCCGACCCTGCTAT............................... 28 1 8 0.63 5 1 0 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAACGTCTTGAATCCGACCCTGCTATT.............................. 27 1 8 0.63 5 0 0 2 0 3 0 0 0 0 0 0
......................................................................................................................TTAGCGAAAATTAAAGTAGGTT.............................................................................................................. 22 1 6 0.50 3 0 0 0 0 3 0 0 0 0 0 0
...............................................................................................................................................ACCGAGCGAGGCAAGTACTAGGC.................................................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CCTGAATCCGACCCTGTT................................. 18 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................AGCGAGGCAAGTAGTAGGCA................................................................................... 20 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................CACCGAGCGAGGCAAGTACTAGGC.................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CACCGAGCGAGGCAAGTATTAGGCAAGT................................................................................ 28 1 8 0.50 4 0 3 0 0 0 1 0 0 0 0 0
...................................................................................................................................................AGCGATGCAAGAAGTAG...................................................................................... 17 2 20 0.40 8 2 0 1 0 2 3 0 0 0 0 0
...............................................................................................................................................................................................ACCAACGTCTTGAATCCGACCCTGCT................................. 26 1 8 0.38 3 0 0 0 0 3 0 0 0 0 0 0
................................................................................................................................................................................................CCAACGTCTTGAATCCGACCCTGCTAT............................... 27 1 8 0.38 3 0 0 0 0 2 1 0 0 0 0 0
....................................................................................................................................................................................................CGTCTTGAATCCGACCCTGCTATT.............................. 24 1 8 0.38 3 0 0 2 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................AACCAACGTCTTGAATCCGACCCTGCTATT.............................. 30 1 8 0.38 3 0 0 3 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AACGTCTTGAATCCGACCCTGCTAT............................... 25 1 8 0.38 3 0 0 2 0 0 1 0 0 0 0 0
.............................TTGATGGGAGTCGGTTTAAA......................................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................TTAGCGAAAATTAAAGTAGGTTT............................................................................................................. 23 1 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AGTTTAGCGAAAATTAAAGTAGGTTT............................................................................................................. 26 1 6 0.33 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................................TAAACCAACGTCCTGAAT............................................ 18 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................CGAGCGAGGCAAGTAGTAG...................................................................................... 19 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................AGGCAAGTATTAGGCAAGT................................................................................ 19 1 10 0.20 2 0 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................AGCGAGGCAAGTATTAGGCAAGT................................................................................ 23 1 10 0.20 2 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GCGATGCAAGAAGTAG...................................................................................... 16 2 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0
...............................................................................................................AGTGAGTTTAGCGAAAATTAAAGTAGTT............................................................................................................... 28 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTTAGCGAAAATTAAAGTAGGTT.............................................................................................................. 24 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................GAGTTTAGCGAAAATTAAAGTAGGTTT............................................................................................................. 27 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................TAAGTTCGCGAGAGGGT.................................................................................................................................... 17 2 14 0.14 2 0 0 0 0 1 1 0 0 0 0 0
.............................................................................................................................................................................................AAACCAACGTCTTGAATCCGACCCTGCT................................. 28 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................GGTAAGTGGTAGGCATGTCT.............................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0
..................................GGGAGTCGGTCTGAACCCA..................................................................................................................................................................................................... 19 3 14 0.14 2 0 0 0 0 0 0 0 2 0 0 0
...........................................................................................................................................................ATGTGGTAGGCAAGTCTTC............................................................................ 19 3 14 0.14 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AAACCAACGTCTTGAATCCGACCCTGCTATT.............................. 31 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TCACCGAGCGAGGCAAGTATTAGGCCAGT................................................................................ 29 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACAACGTCTTGAATCCGACCCTGCTATT.............................. 28 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................CCAACGTCTTGAATCCGACTCTGCTAT............................... 27 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................TTTCACCGAGCGCGGCAAGTATTAGGCAAGT................................................................................ 31 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACAACGTCTTGAATCCGACCCTGCTAT............................... 27 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................AACGTCTTGAATCCGACCCTGCTATT.............................. 26 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................AACCAACGTCTTGAATCCGACCCTGCT................................. 27 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................TACACCGAGCGCGGCAAGTATTAGGCAAGT................................................................................ 30 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................GCAAGTATTAGGCAAGTCT.............................................................................. 19 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACGTCTTGAATCCGACCCTGCTATT.............................. 25 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................CACCGAGCGCGGCAAGTAGGGGGCAAGT................................................................................ 28 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGAGCGAGGCAAGTATTAGGCAAGT................................................................................ 25 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ACCAACGTCTTGAATCCGACCCTGCTATT.............................. 29 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CCAACGTCTTGAATCCGACCCTGCTATT.............................. 28 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................ACCGAGCGAGGCAAGTATTAGGCAAGT................................................................................ 27 1 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................TATACCGAGCGCGGCAAGTATTAGGCAAGT................................................................................ 30 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGCGGCAAGTAGGGGGCAAGT................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................ACGTCCTTTAAACCAACGTCTTGAAT............................................ 26 2 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................AAGGCAAGTATTAGGCAAGT................................................................................ 20 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GAGGCAAGTATTAGGCAAGT................................................................................ 20 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................CGAGGCAAGTATTAGGCCAGT................................................................................ 21 2 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCGACCCTGCTATT.............................. 15 0 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................ACGAGGCAAGCATTAGGCAAGT................................................................................ 22 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................GCGAGGCAAGTATTAGGCCGGT................................................................................ 22 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ATACGTCCTCTAAACCAACGTCTTGAAT............................................ 28 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGCAACGTCCTGAAT............................................ 15 1 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................CCTGCTATTCGAAGGGTTGCT.................. 21 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................AAACTTGCAGTAGGTGTACA.......................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................AAGGCAAGTATTAGGCCAGT................................................................................ 20 3 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TAAGTTCGCGAGATAG..................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................GTTCGCGCGTGAGATT.................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................GCGGCAAGTTGTAGGC.................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_2983:14058-14307 + dsi_16736 ACGCTGCTGATGGCCCCAATCACACGA--AGAAA-------------------------------TACCCTCAGCCAAAGTTGAGTGGGCTTGGATTTGTGAGGCGCGCCTTGAAATCTCC-----------CCATTAACT---------AAGAAT----------------TCAAGCGCTCACTCAAATCGCTTTGA------ATTTCATCC------AAATG--TGGCTCGCTCCGTTCATCATCCGTTCA-----------------------------GAAATGTTTATGCAGGATATTTGGTTGCAGGACTTAGGCTGGGACGATAAACTTCCCACCGAAGTGAATCAGAGGTGGCA
droSec2 scaffold_120:52596-52744 + ACGCTGCTGATGGCCACAATCACATGA--AGAAA-------------------------------TAGCCTCAGCAAAAGTTGAGTGGGCTTGGAAGCGTTACGAGA---------------------------------A---------CATCAT----------------CAAATTTCTCACTCAAATCGCTTT------TAATTTCATCC------A-----------------------------AATCAATCTCTTCAAGTTCGTTC----------AGAATTTTT-----------------------------------------------------------------------
dm3 chr3RHet:1261702-1261875 - ATTTTGGT---AGCTCAAGGGGGGCAGAGAAG-----------------------------------ACGTTGAAGAAAGTTGAATGGGCTTGAATTCGTGAGGAGCGCTTTGAAATCTCC--------------CCACGA---------AAATA-----------------ATTATTTCTCACTCAAATCGCTTT------CAATTTCATCC------A-----------------------------AATCAAGCTCTTCAAGCTCGCTGATAATTTTTCGAAATGTTTGT---------------------------------------------------------------------
droEre2 scaffold_4845:1712773-1712960 - ACATTTCTGGTGGCCACAATCGCACGG--AGAAA-------------------------------T-------GCAAAGGTTGAGTGGGCGTGGATTTGTGGAACGCGCATTGAAATCTCC--------------CCACGATCATCAAATCATCAT----------------CAAATTTCTCTCTCAAATCGCTTT------CAATTTGAT-----------------------------------CTAAACCAAGGTCTTCAAGCTCGCTC----------AGAATTTTT---------------------------------------------CCGAATAATTTGTT--------GCAG
droYak3 v2_chrUn_975:30627-30797 + T----------------------------------------------------------------------------------------------------------------GAAGCTCCCTTG-GAACCCTCCTATACA---------AAGCG-----------------CGAACTTCTGTCCCAAGTGGCTAGGTTCTTC-----GATCC------TG-----TGGGTCGTTCCGTTCATCATCCGTTCC-----------------------------AAAATGTTCATGCGGGAGATTTGTTTGCAGGACTTAGGCTGGGACGATAAGCTTCCCACCAAAT-------GAGGTGGCA
droEug1 scf7180000409308:4464-4638 - CC------------------------------------------------------------------------------------------------------------------------GTC-AAGTCCTCCTATACG---------AAAAG-----------------AGAAGTCCTCTCCCAGATCGCAAAGCTATTC-----AATCC------CGCTGGCTGGCTTGCCCTGTTCATCGTCCGGGCC-----------------------------AAAATTTTTATGCTGGAGATCTGGCTGCAAGAGTTAGGATGGGATGACAACCTTCCCGACGAAATGAGCCATAGATGGCA
droBia1 scf7180000301667:17130-17295 - G----------------------------------------------------------------------------------------------------------------AAATCTCC--------------CTCACA---------AAATG-----------------TCAAGTCCTTTCCCGAATTGCAAAGCTGTTT-----GATCC------AGCAGACTAGCTCGC----TTTGTCGTGTGTGCC-----------------------------AAAATCTGTATGCAAGAGATTTGGCGTCAGGATCTAGGTTGGGATGATAAACTTCCAACTGAGTTGTGCCACAGGCGGAG
droTak1 scf7180000414707:7293-7467 + CC------------------------------------------------------------------------------------------------------------------------GTC-AAGTCCTCCTATACT---------AAAAG-----------------AGAAGTTCTCTCCCAGATCGCAAAGCTATTC-----GATCC------CGCTGGATGGCTTGCTCCGTTCATCGTCCGGGCC-----------------------------AAAATTTTTATGCAGGAGATCTGGCTGCAAGAGTTAGGCTGGGATGACAACCTTCCCGACGAAATGAGCCATAGATGGCA
droEle1 scf7180000490838:4021-4190 - G----------------------------------------------------------------------------------------------------------------AGATCTCC--------------CTAACA---------AAGCG-----------------GCAAGTCCCTTCCCAAATTGCCAAACTGTTT-----GACTC------AGCAGGCTGGCTCGCTTCATTTTTAGTGTGTGCC-----------------------------AAGATCTTTATGCAAGAGATTTGGCTCCAGAAGCTAGGGTGGGAGGATGAACTTCCAATTGAGTTCTGCAAAAAGTGGCG
droRho1 scf7180000762913:566-741 - CC------------------------------------------------------------------------------------------------------------------------GTC-AAATCCTCCTATACA---------AAAAG-----------------AGAAGTTCTCTCCCAGATCGCAAAGCTATTC-----GATCC------CGCTGGATGGCTTGCCCCGTTCATCGTCCGGGCC------------------A----------AAAATTTTTATGCAGGAGATCTGGCTGCAAGAGTTAGGCTGGGATGACAACCTTCCCGCCGAAATGAGCCATAGATGGCA
droFic1 scf7180000453263:23536-23704 - G----------------------------------------------------------------------------------------------------------------AAATCTCC--------------CCCACA---------AAACG-----------------CCAGGTGCTTTCCCAAATCGCCAAACTGTTT-----GATCC------GGCAGGCTGGCTCGCTCCATTCGTTGTGTGTGCC-----------------------------AAGATCTTTATGCAAGAGATTTGGCTTCA-GAACTGGGGTGGGACGATAAGCTGCCATCTGAGTTGTGTCAAAGGTGGCA
droKik1 scf7180000302133:12305-12477 - GT------------------------------------------------------------------------------------------------------------------------CTCGGAATCGTCATTCACC---------AAGCG-----------------TCAGGTCCTATCTCAAATTGCCAAACT-TTT-----GATCC------GGCAGGCTGGCTAGCCCCCTTCGTTGTCCGGGCA-----------------------------AAGATGTTCATGCAGGACATTTGGCTCCAGGATCTAGGGTGGGACGATACTCTTCCTCAAGATTTTTATCAAAGATGG--
droAna3 scaffold_13137:711799-712027 + ATGTTGGCATCGGCAACGGTGGCAAGG--AGGGGGCTGGCTTGTATGGCATTGGCGATATACTGGCACCGTCGAGAAGTGTGGAGTGGGCAGCGATTCTCATGGAGCGCTTGGCAACCTCC--------------ACCTGAATTTCCAATTGCACATCAGTCGCCAGCTGCGAGAATCTCCAATACAGATCACTCC------CGATCTCGCTA------A-----------------------------AATTAAGCTCCTCCAACTCTTCT----------GAACCGCTCA------------------------------------------------------------------CGCA
droBip1 scf7180000391740:11442-11610 - TC-------------------------------------------------------------------------------------------------------------------------------TCGTCTTTCACG---------AAGCG-----------------CCAAGTCCTCTCCCAAATTGCCAAATTGTTC-----GATCC------AGCAGGTTGGCTCGCTCCTTTCATTGTCTGAGCA-----------------------------AAAATGTTCATGCAGGACATTTGGCTTCTGGATCTAGGGTAGGACGACGCCCTCCCTCAAGATTTCTGTCAGCGATGTCA
dp5 Unknown_group_803:8897-9003 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGCTCCTTTCATTGTCCGGTCA-----------------------------AAGATCTTCATGCAAGAGATCTGGTTGCAAGAAGTAGGATGGGACGAAGAACTTCCGACCGAGATGCGTCAGCGCTGGCA
droPer2 scaffold_117:47694-47800 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGCTCCTTTCATTGTCCGGTCA-----------------------------AAGATCTTCATGCAAGAGATCTGGTTGCAAGAAGTAGGATGGGACGAAGAACTTCCGACCGAGATGCGTCAGCGCTGGCA
droWil2 scf2_1100000004943:212878-213040 + ATTTCCTC------------------------------------------------------------------------------------------------------------------------------GATATCG---------AAGAG-----------------GCTAGC------ACAGA---AAAAACACTGG-----GAATCCGATGGAA----AGGGCTGGCTCCCTTTGTAATTCAAGCT-----------------------------AAGGTGTTTATGCAAGAGCTTTGGCTACAAGAGCTAGGGTGGGATGATCAATTGCCCAGTGAACTCCATCACAGGTGGCA
droVir3 scaffold_12886:70559-70680 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----GATCC------AAGAGGTTGGCTGGGTCCAGTCAGTATTCAGGCA-----------------------------AAAATATTCATGCAGGAGATCTGGCTCCAAGAACTGGGCTGCGACGATCCGCTACCTGAGAGTCTTCTCAGTAAGTGGAA
droMoj3 scaffold_4682:12986-13093 + G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTGGCACCCTTTGTCATCCGTTCC-----------------------------AAAATATTTATGCAAGCGCTCTGGCTACGAGGTTTAGATTGGGACCAACCTCTGCCTGGTGAACTCCTCACCCAATGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGCTGCTGATGGCCCCAATCACACGA--AGAAA-------------------------------TACCCTCAGCCAAAGTTGAGTGGGCTTGGATTTGTGAGGCGCGCCTTGAAATCTCC-----------CCATTAACT---------AAGAAT----------------TCAAGCGCTCACTCAAATCGCTTTGA------ATTTCATCC------AAATG--TGGCTCGCTCCGTTCATCATCCGTTCA-----------------------------GAAATGTTTATGCAGGATATTTGGTTGCAGGACTTAGGCTGGGACGATAAACTTCCCACCGAAGTGAATCAGAGGTGGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................TATTTGGTTGCAGGACTTAGGCTGGGA....................................2716.00600000023100000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAAA.............................2513.00300000002000010000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATA...............................2313.00300000010000020000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGA....................................2513.00300000012000000000
...................................................................................................................................................................................................................................................................................................................TGCAGGACTTAGGCTGGGACGATAAAC............................2713.00300100011000000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAA..............................2413.00300000000000030000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGAT................................2213.00300000000000030000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGAC...................................2613.00300000003000000000
......................................................................TCAGCCAAAGTTGAGTGGGCTTGGA...........................................................................................................................................................................................................................................................................2512.00200000000002000000
.....................................................................................................................................................................................................................................................TCCGTTCA-----------------------------GAAATGTTTATGCAGG................................................................2412.00200010000100000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAAT.............................2512.00200000000000020000
.....................................................................................TGGGCTTGGATTTGTGAGGCGCGCCT...........................................................................................................................................................................................................................................................2612.00200000000000020000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGG....................................2531.67500100001120000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAAAC............................2611.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................AACTTCCCACCGAAGTGAATCAGAGGA....2711.00100000010000000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGAC...................................1911.00100000001000000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGACT...............................2311.00100000000000010000
...................................................................................AGTGGGCTTGGATTTGTGAGGC.................................................................................................................................................................................................................................................................2211.00100000000001000000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGGACGA.................................2811.00100000010000000000
...................................................................................................................................................................................................................................................................................................ATGCAGGATATTTGGTT......................................................1711.00100000000001000000
.....................................................................................................................................................................................................................................................TCCGTTCA-----------------------------GAAATGTTTATGCAGGA...............................................................2511.00100000000100000000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTGGG.....................................2431.00300000001200000000
...........................................................................................................................................................................................................................................................................................................TATTTGGTTGCAGGACTTAGGCTGGG.....................................2611.00100000010000000000
.................................................................................................................................................................................................................................................ATCATCCGTTCA-----------------------------GAAATG..........................................................................1811.00110000000000000000
...................................................................................................................................................................................................................................................................................................................TGCAGGACTTAGGCTGGGA....................................1911.00100000000001000000
..............................................................................................................................................................................................................................................................................................TGTTTATGCAGGATATTTGGTTGC....................................................2411.00100000000001000000
...........................................................................................................................................................................................................................................................................................................TATTTGGTTGCAGGACTTAGGCT........................................2311.00100000000100000000
......................................................................TCAGCCAAAGTTGAGTG...................................................................................................................................................................................................................................................................................1711.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................TTAGGCTGGGACGATAAACTTCCCAC.....................2611.00100000000001000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATAC..............................2411.00100000000000010000
.....................................................................................................................................................................................................................................................TCCGTTCA-----------------------------GAAATGTTTATGCA..................................................................2211.00100000010000000000
....................................................................................................................................................................................................................................................................................................................GCAGGACTTAGGCTGGGACGATTT..............................2411.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................TAAACTTCCCACCGAAGTGAATCAGAG......2711.00100000000001000000
..............................................................................................................................................................................................................................................................................................................TTGGTTGCAGGACTTAGGCTGGGACGT.................................2711.00100000010000000000
.....................................................................................TGGGCTTGGATTTGTGAGGCGCGC.............................................................................................................................................................................................................................................................2411.00100000000000010000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGGCTG.......................................2230.33100000000010000000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGG..........................................1930.33100000000010000000
...........................................................................................................................................................................................................................................................................................................................TTAGGCTGGGACGATA...............................1690.33300000000003000000
.............................................................................................................................................................................................................................................................................................................TTTGGTTGCAGGACTTAGGC.........................................2030.33100000010000000000
...........................................................................................................................................................................................................................................................................................................................TTAGGCTGGGACGATAA..............................1790.22200000000002000000
.........................................................................................................................................................................................................................................................................................................................ACTTAGGCTGGGACGAT................................1790.22200000000002000000
..........................................................................................................................................................................................................................................................................................................................CTTAGGCTGGGACGATA...............................1790.11100000000001000000
.........................................................................................................................................................................................................................................................................................................................ACTTAGGCTGGGACGATA...............................1890.11100000000001000000
...........................................................................................................................................................................................................................................................................................................................TTAGGCTGGGACGAT................................1590.11100000000001000000
............................................................................................................................................................................................................................................................................................................................TAGGCTGGGACGATA...............................15100.10100000000001000000
.............................................................................................................................................................................................................................................................................................................................AGGCTGGGACGATAA..............................15100.10100000000001000000
droSec2
ACGCTGCTGATGGCCACAATCACATGA--AGAAA-------------------------------TAGCCTCAGCAAAAGTTGAGTGGGCTTGGAAGCGTTACGAGA---------------------------------A---------CATCAT----------------CAAATTTCTCACTCAAATCGCTTT------TAATTTCATCC------A-----------------------------AATCAATCTCTTCAAGTTCGTTC----------AGAATTTTT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ATTTTGGT---AGCTCAAGGGGGGCAGAGAAG-----------------------------------ACGTTGAAGAAAGTTGAATGGGCTTGAATTCGTGAGGAGCGCTTTGAAATCTCC--------------CCACGA---------AAATA-----------------ATTATTTCTCACTCAAATCGCTTT------CAATTTCATCC------A-----------------------------AATCAAGCTCTTCAAGCTCGCTGATAATTTTTCGAAATGTTTGT---------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................TGGGCTTGAATTCGTGAGGAGCGCTT...........................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002210100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............GCTCAAGGGGGGCAGAGAAG-----------------------------------AA.....................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000
..........................................................................................TTGAATTCGTGAGGAGCGCTT...........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................G-----------------------------------ACGTTGAAGAAAGTTGAATGGG.................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TGGGCTTGAATTCGTGAGGAGCGCTTT..........................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GAAAGTTGAATGGGCTTGAAT..........................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
..TTTGGT---AGCTCAAGGGGGGCA................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000
.......T---AGCTCAAGGGGGGCAGAGAAG-----------------------------------ACG....................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
....................................................................................ATGGGCTTGAATTCGTGAGGA.................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.......................................................................TGAAGAAAGTTGAATGGGCTTGAAT..........................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CATCC------A-----------------------------AATCAAGCTCTTCAAGCTCGC............................................................................................2711.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GTTGAATGGGCTTGAATTCGTT.....................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...TTGGT---AGCTCAAGGGGGGCAGAG.............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................................GGGCTTGAATTCGTGAGGAGC...............................................................................................................................................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTCATCC------A-----------------------------AATCAAGCTCTTCAAGCT...............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................GCTTGAATTCGTGAGGAGCGCTTT..........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TGAATGGGCTTGAATTCGTGAGGAG................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGAAGAAAGTTGAATGGGCTT..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTCATCC------A-----------------------------AATCAAGCTCTTC....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TTGAAGAAAGTTGAATGGGCTTGA............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................TGGGCTTGAATTCGTGAGGAGCGCT............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGAAGAAAGTTGAATGGGCTTGAATT.........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CACTCAAATCGCTTT------CAATTT..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................AAGAAAGTTGAATGGGCTTGA............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AG-----------------------------------ACGTTGAAGAAAGTTGAATGGG.................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................TTGAAATCTCC--------------CCACGA---------AAATA-----------------AT............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TTGAATGGGCTTGAATTCGTGAGGA.................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTTCTCACTCAAATCGCTTT------CA..............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................TTCGTGAGGAGCGCTTTGAAATCTCC--------------...................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................AAG-----------------------------------ACGTTGAAGAAAGTTGAATGGG.................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTTTGGT---AGCTCAAGGGGGGCAGAGA............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T---AGCTCAAGGGGGGCAGAGAA...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CGTTGAAGAAAGTTGAATGGG.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...............................G-----------------------------------ACGTTGAAGAAAGTTGAATGGGC................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................AAGCTCGCTGATAATTTTTCG...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGATAATTTTTCGAAATT..........................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACATTTCTGGTGGCCACAATCGCACGG--AGAAA-------------------------------T-------GCAAAGGTTGAGTGGGCGTGGATTTGTGGAACGCGCATTGAAATCTCC--------------CCACGATCATCAAATCATCAT----------------CAAATTTCTCTCTCAAATCGCTTT------CAATTTGAT-----------------------------------CTAAACCAAGGTCTTCAAGCTCGCTC----------AGAATTTTT---------------------------------------------CCGAATAATTTGTT--------GCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
T----------------------------------------------------------------------------------------------------------------GAAGCTCCCTTG-GAACCCTCCTATACA---------AAGCG-----------------CGAACTTCTGTCCCAAGTGGCTAGGTTCTTC-----GATCC------TG-----TGGGTCGTTCCGTTCATCATCCGTTCC-----------------------------AAAATGTTCATGCGGGAGATTTGTTTGCAGGACTTAGGCTGGGACGATAAGCTTCCCACCAAAT-------GAGGTGGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CC------------------------------------------------------------------------------------------------------------------------GTC-AAGTCCTCCTATACG---------AAAAG-----------------AGAAGTCCTCTCCCAGATCGCAAAGCTATTC-----AATCC------CGCTGGCTGGCTTGCCCTGTTCATCGTCCGGGCC-----------------------------AAAATTTTTATGCTGGAGATCTGGCTGCAAGAGTTAGGATGGGATGACAACCTTCCCGACGAAATGAGCCATAGATGGCASizeHit CountTotal NormTotal
No Reads
droBia1
G----------------------------------------------------------------------------------------------------------------AAATCTCC--------------CTCACA---------AAATG-----------------TCAAGTCCTTTCCCGAATTGCAAAGCTGTTT-----GATCC------AGCAGACTAGCTCGC----TTTGTCGTGTGTGCC-----------------------------AAAATCTGTATGCAAGAGATTTGGCGTCAGGATCTAGGTTGGGATGATAAACTTCCAACTGAGTTGTGCCACAGGCGGAGSizeHit CountTotal NormTotal
No Reads
droTak1
CC------------------------------------------------------------------------------------------------------------------------GTC-AAGTCCTCCTATACT---------AAAAG-----------------AGAAGTTCTCTCCCAGATCGCAAAGCTATTC-----GATCC------CGCTGGATGGCTTGCTCCGTTCATCGTCCGGGCC-----------------------------AAAATTTTTATGCAGGAGATCTGGCTGCAAGAGTTAGGCTGGGATGACAACCTTCCCGACGAAATGAGCCATAGATGGCASizeHit CountTotal NormTotal
No Reads
droEle1
G----------------------------------------------------------------------------------------------------------------AGATCTCC--------------CTAACA---------AAGCG-----------------GCAAGTCCCTTCCCAAATTGCCAAACTGTTT-----GACTC------AGCAGGCTGGCTCGCTTCATTTTTAGTGTGTGCC-----------------------------AAGATCTTTATGCAAGAGATTTGGCTCCAGAAGCTAGGGTGGGAGGATGAACTTCCAATTGAGTTCTGCAAAAAGTGGCGSizeHit CountTotal NormTotal
No Reads
droRho1
CC------------------------------------------------------------------------------------------------------------------------GTC-AAATCCTCCTATACA---------AAAAG-----------------AGAAGTTCTCTCCCAGATCGCAAAGCTATTC-----GATCC------CGCTGGATGGCTTGCCCCGTTCATCGTCCGGGCC------------------A----------AAAATTTTTATGCAGGAGATCTGGCTGCAAGAGTTAGGCTGGGATGACAACCTTCCCGCCGAAATGAGCCATAGATGGCASizeHit CountTotal NormTotal
No Reads
droFic1
G----------------------------------------------------------------------------------------------------------------AAATCTCC--------------CCCACA---------AAACG-----------------CCAGGTGCTTTCCCAAATCGCCAAACTGTTT-----GATCC------GGCAGGCTGGCTCGCTCCATTCGTTGTGTGTGCC-----------------------------AAGATCTTTATGCAAGAGATTTGGCTTCA-GAACTGGGGTGGGACGATAAGCTGCCATCTGAGTTGTGTCAAAGGTGGCASizeHit CountTotal NormTotal
No Reads
droKik1
GT------------------------------------------------------------------------------------------------------------------------CTCGGAATCGTCATTCACC---------AAGCG-----------------TCAGGTCCTATCTCAAATTGCCAAACT-TTT-----GATCC------GGCAGGCTGGCTAGCCCCCTTCGTTGTCCGGGCA-----------------------------AAGATGTTCATGCAGGACATTTGGCTCCAGGATCTAGGGTGGGACGATACTCTTCCTCAAGATTTTTATCAAAGATGG--SizeHit CountTotal NormTotal
No Reads
droAna3
ATGTTGGCATCGGCAACGGTGGCAAGG--AGGGGGCTGGCTTGTATGGCATTGGCGATATACTGGCACCGTCGAGAAGTGTGGAGTGGGCAGCGATTCTCATGGAGCGCTTGGCAACCTCC--------------ACCTGAATTTCCAATTGCACATCAGTCGCCAGCTGCGAGAATCTCCAATACAGATCACTCC------CGATCTCGCTA------A-----------------------------AATTAAGCTCCTCCAACTCTTCT----------GAACCGCTCA------------------------------------------------------------------CGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................TGAATTTCCAATTGCACATCAGTCGC......................................................................................................................................................................................................2613.003120000
...............................................................................................TTCTCATGGAGCGCTTGGCAACCTCC--------------ACC................................................................................................................................................................................................................................29201.40282440000
...............................................................................................TTCTCATGGAGCGCTTGGCAACCT...................................................................................................................................................................................................................................................24201.25250241000
...............................................................................................TTCTCATGGAGCGCTTGGCAAC.....................................................................................................................................................................................................................................................22201.00200200000
................................................................................................................................................................................TCTCCAATACAGATCACTCC------CGATC...........................................................................................................................................................25200.75150150000
................................................................................................TCTCATGGAGCGCTTGGCAACCTCC--------------ACC................................................................................................................................................................................................................................28200.65131300000
.................................................ATTGGCGATATACTGGCACCGTC..................................................................................................................................................................................................................................................................................................2320.501100000
......................................................................TCGAGAAGTGTGGAGTGGGCAGC.............................................................................................................................................................................................................................................................................23200.459900000
...............................................................................................................................................................................ATCTCCAATACAGATCACTCC------CGA.............................................................................................................................................................24200.357700000
.........................................TGTATGGCATTGGCGATATACTGGCA.......................................................................................................................................................................................................................................................................................................2630.331100000
.........................................TGTATGGCATTGGCGATATACTGGCAC......................................................................................................................................................................................................................................................................................................2730.331100000
...........................................TATGGCATTGGCGATATACTGGCAC......................................................................................................................................................................................................................................................................................................2530.331100000
.........................................TGTATGGCATTGGCGATATACTGG.........................................................................................................................................................................................................................................................................................................2430.331100000
...........................................TATGGCATTGGCGATATACTGGCACC.....................................................................................................................................................................................................................................................................................................2630.331010000
..................................................................................................................................................................................TCCAATACAGATCACTCC------CGATCTCGC.......................................................................................................................................................27200.306510000
................................................................................................TCTCATGGAGCGCTTGGCAAC.....................................................................................................................................................................................................................................................21200.306060000
.............................................................................................................................................................................................................TCTCGCTA------A-----------------------------AATTAAGCTCCTCCAAC................................................................................................26200.255050000
................................................................GCACCGTCGAGAAGTGTGGAGTGG..................................................................................................................................................................................................................................................................................24200.255500000
..............................................................................................................................................................................AATCTCCAATACAGATCACTCC------CGA.............................................................................................................................................................25200.153300000
........................................................................................................................................................CACATCAGTCGCCAGCTGCGAGAATC........................................................................................................................................................................................26200.153300000
..............................................................TGGCACCGTCGAGAAGTGTGGAGT....................................................................................................................................................................................................................................................................................24200.153030000
...............................................................................................TTCTCATGGAGCGCTTGGCAACCTCC--------------A..................................................................................................................................................................................................................................27200.153030000
...................................CTGGCTTGTATGGCATTGGCGA.................................................................................................................................................................................................................................................................................................................22200.153300000
................................................................................................................................................................................TCTCCAATACAGATCACTCC------CGAT............................................................................................................................................................24200.102200000
....................................................................................................ATGGAGCGCTTGGCAACCTC..................................................................................................................................................................................................................................................20200.102020000
..........CGGCAACGGTGGCAAGG--AGGG.........................................................................................................................................................................................................................................................................................................................................21200.102200000
.................................................................CACCGTCGAGAAGTGTGGAGT....................................................................................................................................................................................................................................................................................21200.102110000
ATGTTGGCATCGGCAACGGTGG....................................................................................................................................................................................................................................................................................................................................................22200.102020000
.........TCGGCAACGGTGGCAAGG--AGGGGGCT.....................................................................................................................................................................................................................................................................................................................................26200.051100000
.........TCGGCAACGGTGGCAAGG--AGGGGG.......................................................................................................................................................................................................................................................................................................................................24200.051100000
...............................................................................................................................................................................................ACTCC------CGATCTCGCTA------A-----------------------------AATTAAGCTCC......................................................................................................28200.051100000
.............................................................................................................................................................................GAATCTCCAATACAGATCACTCC------CGATCT..........................................................................................................................................................29200.051100000
........................................................................................................................................................................TGCGAGAATCTCCAATACAGATCACT........................................................................................................................................................................26200.051010000
........ATCGGCAACGGTGGCAAGG--AGGGG........................................................................................................................................................................................................................................................................................................................................24200.051100000
............................................................................................................................................................................AGAATCTCCAATACAGATCACTCC------CG..............................................................................................................................................................26200.051100000
...................................................................................................CATGGAGCGCTTGGCAACCC...................................................................................................................................................................................................................................................20200.051010000
...................................................................................................................................................................................CCAATACAGATCACTCC------CGATC...........................................................................................................................................................22200.051010000
.............................................................................GTGTGGAGTGGGCAGCGATT.........................................................................................................................................................................................................................................................................20200.051010000
..............................................................TGGCACCGTCGAGAAGTGTGGAGTG...................................................................................................................................................................................................................................................................................25200.051100000
..............................................................................................................................................................................AATCTCCAATACAGATCACTCC------CGATCT..........................................................................................................................................................28200.051100000
.................................................................................................................................................................................CTCCAATACAGATCACTCC------CGATCTCGC.......................................................................................................................................................28200.051100000
............................................................................................................................................................................AGAATCTCCAATACAGATCACC........................................................................................................................................................................22200.051010000
.............................................................................................................................................................................GAATCTCCAATACAGATCACTCC------CG..............................................................................................................................................................25200.051010000
...........................................................................AAGTGTGGAGTGGGCAGCG............................................................................................................................................................................................................................................................................19200.051100000
..............................................................TGGCACCGTCGAGAAGTGTGG.......................................................................................................................................................................................................................................................................................21200.051100000
.......................................................................CGAGAAGTGTGGAGTGGG.................................................................................................................................................................................................................................................................................18200.051100000
.............................................................................................................................................................................................TCACTCC------CGATCTCGCTA------A-----------------------------AATTAAGC.........................................................................................................27200.051100000
.....................................................................................................................................................TTGCACATCAGTCGCCAGCTGCGAGAA..........................................................................................................................................................................................27200.051010000
...................................................................CCGTCGAGAAGTGTGGAGTGGGCAC..............................................................................................................................................................................................................................................................................25200.051100000
.................................................................................................CTCATGGAGCGCTTGGCAACCTCC--------------ACC................................................................................................................................................................................................................................27200.051100000
..............................................................TGGCACCGTCGAGAAGTGTGGA......................................................................................................................................................................................................................................................................................22200.051000010
.....................................................................GTCGAGAAGTGTGGAGTGGGCA...............................................................................................................................................................................................................................................................................22200.051010000
..............................................................................TGTGGAGTGGGCAGCGATTCTCATGG..................................................................................................................................................................................................................................................................26200.051100000
.....................................................................GTCGAGAAGTGTGGAGTGGGCAGC.............................................................................................................................................................................................................................................................................24200.051001000
........................................................................GAGAAGTGTGGAGTGGGC................................................................................................................................................................................................................................................................................18200.051000001
.................................................................................GGAGTGGGCAGCGATTCTCATGGAGC...............................................................................................................................................................................................................................................................26200.051000001
.............................................................................................GATTCTCATGGAGCGCTTGGCAACCT...................................................................................................................................................................................................................................................26200.051100000
.................................................................................................................................................................................CTCCAATACAGATCACTCC------CGATC...........................................................................................................................................................24200.051100000
.............................................................................................................................................................................GAATCTCCAATACAGATCACTCC------................................................................................................................................................................23200.051100000
..........................G--AGGGGGCTGGCTTGTATGG..........................................................................................................................................................................................................................................................................................................................20200.051000010
...........................................................................................GCGATTCTCATGGAGCGCTTGGC........................................................................................................................................................................................................................................................23200.051010000
droBip1
TC-------------------------------------------------------------------------------------------------------------------------------TCGTCTTTCACG---------AAGCG-----------------CCAAGTCCTCTCCCAAATTGCCAAATTGTTC-----GATCC------AGCAGGTTGGCTCGCTCCTTTCATTGTCTGAGCA-----------------------------AAAATGTTCATGCAGGACATTTGGCTTCTGGATCTAGGGTAGGACGACGCCCTCCCTCAAGATTTCTGTCAGCGATGTCASizeHit CountTotal NormTotal
No Reads
dp5
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGCTCCTTTCATTGTCCGGTCA-----------------------------AAGATCTTCATGCAAGAGATCTGGTTGCAAGAAGTAGGATGGGACGAAGAACTTCCGACCGAGATGCGTCAGCGCTGGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTGC....................................................2355.802902500111100
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTG.....................................................2254.002001700001200
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTGCA...................................................2451.4070600001000
.................................................................................................................................................................................................................................................................................................................GTTGCAAGAAGTAGGATGGGA....................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................TGGGACGAAGAACTTCCGACCGAGA................2511.0010010000000
...................................................................................................................................................................................................................................................TGTCCGGTCA-----------------------------AAGATCTTCATG....................................................................2260.5030200000100
.....................................................................................................................................................................................................................................................TCCGGTCA-----------------------------AAGATCTTCATGCAAGAGATC...........................................................2920.5010010000000
.....................................................................................................................................................................................................................................................TCCGGTCA-----------------------------AAGATCTTCATGCA..................................................................2260.3320200000000
...................................................................................................................................................................................................................................................TGTCCGGTCA-----------------------------AAGATCTTCATGCA..................................................................2460.3320200000000
...................................................................................................................................................................................................................................................TGTCCGGTCA-----------------------------AAGATCTTCATGC...................................................................2360.3320200000000
...............................................................................................................................................................................................................................................................................................................................................TCCGACCGAGATGCGTCAGCGCTGGC.2640.2510100000000
...............................................................................................................................................................................................................................................................................................................................................TCCGACCGAGATGCGTCAGCGCTGGCA2740.2510100000000
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTGCAA..................................................2550.2010100000000
.................................................................................................................................................................................................................................................................................................TCATGCAAGAGATCTGGTTGC....................................................2150.2010100000000
................................................................................................................................................................................................................................................................................................TTCATGCAAGAGATCTGGTTG.....................................................2150.2010100000000
................................................................................................................................................................................................................................................................................................TTCATGCAAGAGATCTGGTTGC....................................................2250.2010100000000
................................................................................................................................................................................................................................................................................................TTCATGCAAGAGATCTGGTTGCAAG.................................................2550.2010100000000
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTT......................................................2150.2010100000000
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTGT....................................................2350.2010100000000
..............................................................................................................................................................................................................................................................................................TCTTCATGCAAGAGATCTGGTTGC....................................................2450.2010100000000
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTA.....................................................2250.2010100000000
.....................................................................................................................................................................................................................................................TCCGGTCA-----------------------------AAGATCTTCATGCAAGAG..............................................................2660.1710100000000
...................................................................................................................................................................................................................................................TGTCCGGTCA-----------------------------AAGATCTTCATGCAAGA...............................................................2760.1710100000000
..................................................................................................................................................................................................................................................TTGTCCGGTCA-----------------------------AAGATCTTCATGC...................................................................2460.1710100000000
.......................................................................................................................................................................................................................................GGCTCCTTTCATTGTCCGG................................................................................................................1960.1710100000000
.......................................................................................................................................................................................................................................................CGGTCA-----------------------------AAGATCTTCATGCAAGA...............................................................2360.1710100000000
.....................................................................................................................................................................................................................................................TCCGGTCA-----------------------------AAGATCTTCATGCAA.................................................................2360.1710100000000
droPer2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTTGGCTCCTTTCATTGTCCGGTCA-----------------------------AAGATCTTCATGCAAGAGATCTGGTTGCAAGAAGTAGGATGGGACGAAGAACTTCCGACCGAGATGCGTCAGCGCTGGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTGC....................................................2380.504040000
...............................................................................................................................................................................................................................................................................................CTTCATGCAAGAGATCTGGTTGCA...................................................2480.252020000
...................................................................................................................................................................................................................................................................................................ATGCAAGAGATCTGGTTGCAAGAAG..............................................2570.141010000
................................................................................................................................................................................................................................................................................................TTCATGCAAGAGATCTGGTTGCA...................................................2380.131010000
droWil2
ATTTCCTC------------------------------------------------------------------------------------------------------------------------------GATATCG---------AAGAG-----------------GCTAGC------ACAGA---AAAAACACTGG-----GAATCCGATGGAA----AGGGCTGGCTCCCTTTGTAATTCAAGCT-----------------------------AAGGTGTTTATGCAAGAGCTTTGGCTACAAGAGCTAGGGTGGGATGATCAATTGCCCAGTGAACTCCATCACAGGTGGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................TCCGATGGAA----AGGGCTGGCTC..............................................................................................................................2112.00202000
...................................................................................................................................................................................................................TCCGATGGAA----AGGGCTGGCTCCCT...........................................................................................................................2412.00201010
...................................................................................................................................................................................................................TCCGATGGAA----AGGGCTGGCTCC.............................................................................................................................2212.00220000
...................................................................................................................................................................................................AACACTGG-----GAATCCGATGGAA----AGGG.....................................................................................................................................2511.00100010
........................................................................................................................................TATCG---------AAGAG-----------------GCTAGC------ACAGA---AAA.......................................................................................................................................................................2411.00101000
....................................................................................................................................................................................................................CCGATGGAA----AGGGCTGGCTCCC............................................................................................................................2211.00101000
...................................................................................................................................................................................................................TCCGATGGAA----AGGGCTGGCTCCC............................................................................................................................2311.00100010
..................................................................................................................................................................................................................ATCCGATGGAA----AGGGCTGGCTCCCTT..........................................................................................................................2611.00100010
.......C------------------------------------------------------------------------------------------------------------------------------GATATCG---------AAGAG-----------------GCTAGC------ACAGA---A.........................................................................................................................................................................2511.00101000
...................................................................................................................................................................................................AACACTGG-----GAATCCGATGGAA----AGGGC....................................................................................................................................2611.00101000
...................................................................................................................................................................................................................TCCGATGGAA----AGGGCTGGCTCCCTT..........................................................................................................................2511.00101000
......................................................................................................................................................................................................................................................................................................................................TGATCAATTGCCCAGTGAACTCCA............24200.6513013000
......................................................................................................................................................................................................................................................................................................................................TGATCAATTGCCCAGTGAACTCCAT...........25200.45909000
............................................................................................................................................................................................................................................................................................................................TAGGGTGGGATGATCAATTGCCCA......................24200.40802060
...................................................................................................................................................................................................................................................................................................................................................AGTGAACTCCATCACAGGTGG..21200.40808000
.................................................................................................................................................................................................................................................................................................TTATGCAAGAGCTTTGGCTACAAG.................................................24200.35702050
.................................................................................................................................................................................................................................................................................................TTATGCAAGAGCTTTGGCTACAAGAG...............................................26200.35700070
..................................................................................................................................................................................................................................................TAATTCAAGCT-----------------------------AAGGTGTTTATGCA..................................................................2530.33100010
..............................................................................................................................................................................................................................................................................................TGTTTATGCAAGAGCTTTGGCTACAAG.................................................27200.30600060
.....................................................................................................................................................................................................................................................................................................................................ATGATCAATTGCCCAGTGAACTCC.............24200.30605010
.......C------------------------------------------------------------------------------------------------------------------------------GATATCG---------AAGAG-----------------GCTAGC------ACAG..............................................................................................................................................................................23200.25505000
....................................................................................................................................................................................................................................................................................................TGCAAGAGCTTTGGCTACAAGAGCT.............................................25200.25500050
..............................................................................................................................................................................................................................................................................................TGTTTATGCAAGAGCTTTGGCTACAA..................................................26200.25502030
....................................................................................................................................................................................................ACACTGG-----GAATCCGATGGAA----AG.......................................................................................................................................22200.20402002
..............................................................................................................................................................................................................................................................................................TGTTTATGCAAGAGCTTTGGCTAC....................................................24200.20404000
.......................................................................................................................................................................................................................................................................................................................................GATCAATTGCCCAGTGAACTCCAT...........24200.20404000
.....................................................................................................................................................................................................................................................................................................................................ATGATCAATTGCCCAGTGAACTCCA............25200.15303000
...................................................................................................................................................................................................................................................................................................................TACAAGAGCTAGGGTGGGATG..................................21200.15302001
.........................................................................................................................................................................................................................................................................................................................AGCTAGGGTGGGATGATCAATTGC.........................24200.15300030
..............................................................................................................................................................................................................................................................................................TGTTTATGCAAGAGCTTTGGCTA.....................................................23200.15303000
..................................................................................................................................................................................................................................................................................................TATGCAAGAGCTTTGGCTACAAGAGCT.............................................27200.15300030
........................................................................................................................................................................................................................................................................................................................................ATCAATTGCCCAGTGAACTCC.............21200.15312000
.................................................................................................................................................................................................................................................................................................TTATGCAAGAGCTTTGGCTACAAGAGC..............................................27200.15300030
......................................................................................................................................................................................................................................................................................................................................TGATCAATTGCCCAGTGAACTCCATCA.........27200.10202000
......................................................................................................................................................................................................................................................................................................................................TGATCAATTGCCCAGTGAACTCCATT..........26200.10202000
......................................................................................................................................................................................................................................................................................................................AAGAGCTAGGGTGGGATGATC...............................21200.10202000
..................................................................................................................................................................................................................................................................................................................................................CAGTGAACTCCATCACAGG.....19200.10202000
....................................................................................................................................................................................................................................................................................................................................................GTGAACTCCATCACAGGTGGCA22200.10202000
.....................................................................................................................................................................................................CACTGG-----GAATCCGATGGAA----AG.......................................................................................................................................21200.10202000
......................................................................................................................................................................................................................................................................................................................................TGATCAATTGCCCAGTGAACTC..............22200.10202000
............................................................................................................................................................................................................................................................................................................................TAGGGTGGGATGATCAATTGCCC.......................23200.10201010
.........................................................................................................................................................................................................................................................................................................................................TCAATTGCCCAGTGAACTCCA............21200.10202000
.................................................................................................................................................................................................................................................................................................TTATGCAAGAGCTTTGGCTACAAGA................................................25200.10200020
....................................................................................................................................................................................................................................................................................................TGCAAGAGCTTTGGCTACAAGAGCTAG...........................................27200.10201010
..................................................................................................................................................................................................................................................................................................................................................CAGTGAACTCCATCACAGGTG...21200.10202000
.................................................................................................................................................................................................AAAACACTGG-----GAATCCGATGG...............................................................................................................................................21200.10200002
.................................................................................................................................................................................................................................................................................................TTATGCAAGAGCTTTGGCTACAAGAGCT.............................................28200.10200020
.......................................................................................................................................................................................................CTGG-----GAATCCGATGGAA----AG.......................................................................................................................................19200.05101000
...............................................................................................................................................................................................................................................................................................GTTTATGCAAGAGCTTTGGCTACAAG.................................................26200.05101000
....................................................................................................................................................................................................................................................................................................................ACAAGAGCTAGGGTGGGATGATCAAT............................26200.05100001
..................................................................................................................................................................................................................................................................................................TATGCAAGAGCTTTGGCTACAAGAGC..............................................26200.05101000
....................................................................................................................................................................................................................................................................................................................ACAAGAGCTAGGGTGGGATGA.................................21200.05101000
.........................................................................................................................................................................................................................................................................................................................................TCAATTGCCCAGTGAACTCCATCAC........25200.05110000
......................................................................................................................................................................................................................................................................................................................................................GAACTCCATCACAGGTGGCA20200.05101000
....................................................................................................................................................................................................................................................................................................TGCAAGAGCTTTGGCTACAAGAGC..............................................24200.05101000
.................................................................................................................................................................................................................................................................................................................................TGGGATGATCAATTGCCCAGTGAAC................25200.05100010
....................................................................................................................................................................................................................................................................................................TGCAAGAGCTTTGGCTACAAGAGCTAGG..........................................28200.05100010
.......................................................................................................................................................................................................................................................................................................................AGAGCTAGGGTGGGATGAT................................19200.05101000
...........................................................................................................................................................................................................................................................................................................................................AATTGCCCAGTGAACTCCATCACAGG.....26200.05101000
...................................................................................................................................................................................................................................................................................................................TACAAGAGCTAGGGTGGGATGATCAAT............................27200.05101000
..........................................................................................................................................................................................................................................................................................................................................CAATTGCCCAGTGAACTCCATC..........22200.05101000
......TC------------------------------------------------------------------------------------------------------------------------------GATATCG---------AAGAG-----------------GCTAGC------ACAG..............................................................................................................................................................................24200.05100100
.........................................................................................................................................................................................................................................................................................................................................TCAATTGCCCAGTGAACTCC.............20200.05101000
............................................................................................................................................................................................................................................................................................................................TAGGGTGGGATGATCAATTGCCCAG.....................25200.05100010
..............................................................................................................................................................................................................................................................................................................TTGGCTACAAGAGCTAGGGTGGG.....................................23200.05100010
............................................................................................................................................................................................................................................................................................................................TAGGGTGGGATGATCAATTGCC........................22200.05101000
........................................................................................................................................................................................................................................................................................................AGAGCTTTGGCTACAAGAGCT.............................................21200.05100001
............................................................................................................................................................................................................................................................................................................................TAGGGTGGGATGATCAATTGCCCAGTG...................27200.05101000
...............................................................................................................................................................................................................................................................................................................TGGCTACAAGAGCTAGGGTGGGA....................................23200.05100010
.........................................................................................................................................................................................................................................................................................................................AGCTAGGGTGGGATGATCAAT............................21200.05101000
..............................................................................................................................................................................................................................................................................................TGTTTATGCAAGAGCTTTGGCT......................................................22200.05101000
....................................................................................................................................................................................................................................................................................................................................GATGATCAATTGCCCAGTGA..................20200.05101000
..............................................................................................................................................................................................................................................................................................................................GGGTGGGATGATCAATTGC.........................19200.05100100
..............................................................................................................................................................................................................................................................................................................TTGGCTACAAGAGCTAGGGTGGGA....................................24200.05100010
..............................................................................................................................................................................................................................................................................................................................................TGCCCAGTGAACTCCATCACAG......22200.05101000
......................................................................................................................................................................................................................................................................................................................AAGAGCTAGGGTGGGATGAT................................20200.05100001
................................................................................................................................................................................................................................................................................................................GGCTACAAGAGCTAGGGTGGGAT...................................23200.05100100
.........................................................................................................................................................................................................................................................................................................GAGCTTTGGCTACAAGAGCT.............................................20200.05100010
.............................................................................................................................................................................................................................................................................................................................................TTGCCCAGTGAACTCCATCAC........21200.05101000
.....................................................................................................................................................................................................................................................................................................................................................TGAACTCCATCACAGGTGG..19200.05110000
....................................................................................................................................................................................................................................................................................................................ACAAGAGCTAGGGTGGGATG..................................20200.05100001
....................................................................................................................................................................................................................................................................................................................ACAAGAGCTAGGGTGGGA....................................18200.05101000
.................................................................................................................................................................................................................................................................................................TTATGCAAGAGCTTTGGCTACAAGAGCC.............................................28200.05100010
.................................................................................................................................................................................................................................................................................................................................TGGGATGATCAATTGCCCAGTGAACT...............26200.05101000
......TC------------------------------------------------------------------------------------------------------------------------------GATATCG---------AAGAG-----------------GCTAGC------..................................................................................................................................................................................20200.05100010
.................................................................................................................................................................................................................................................................................................................................................CCAGTGAACTCCATCACAGGTGG..23200.05101000
..............................................................................................................................................................................................................................................................................................TGTTTATGCAAGAGCTTTGGCTACAT..................................................26200.05101000
......TC------------------------------------------------------------------------------------------------------------------------------GATATCG---------AAGAG-----------------GCTAGC------A.................................................................................................................................................................................21200.05101000
...............................................................................................................................................................................................................................................................................................GTTTATGCAAGAGCTTTGGCT......................................................21200.05100010
.............................................................................................................................................................................................................................................................................................................................AGGGTGGGATGATCAATTGCC........................21200.05100001
..........................................................................................................................................................................................................................................................................................................................................CAATTGCCCAGTGAACTCCATCACAG......26200.05101000
...............................................................................................................................................................................................................................................................................................................TGGCTACAAGAGCTAGGGTGG......................................21200.05100010
.............................................................................................................................................................................................................................................................................................................................AGGGTGGGATGATCAATTGCCCAG.....................24200.05100010
......................................................................................................................................................................................................................................................................................................................AAGAGCTAGGGTGGGATGATCAA.............................23200.05101000
...................................................................................................................................................................................................AACACTGG-----GAATCCGATGGAA----AG.......................................................................................................................................23200.05100100
.........................................................................................................................................................................................................................................................................................................................AGCTAGGGTGGGATGATCAATTG..........................23200.05101000
............................................................................................................................................................................................................................................................................................GGTGTTTATGCAAGAGCTTTGGCTA.....................................................25200.05100010
........................................................................................................................................................................................................TGG-----GAATCCGATGGAA----AG.......................................................................................................................................18200.05100001
.................................................................................................................................................................................................................................................................................................................................................CCAGTGAACTCCATCACAGGTGGCA25200.05101000
.........................................................................................................................................................................................................................................................................................................................AGCTAGGGTGGGATGATCAATTGCC........................25200.05101000
.............................................................................................................................................................................................................................................................................................GTGTTTATGCAAGAGCTTTGGCTACAA..................................................27200.05101000
..................................................................................................................................................................................................................................................................................................................................................CAGTGAACTCCATCACAGGT....20200.05101000
....................................................................................................................................................................................................................................................................................................TGCAAGAGCTTTGGCTACAAGAGCTA............................................26200.05100010
droVir3
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-----GATCC------AAGAGGTTGGCTGGGTCCAGTCAGTATTCAGGCA-----------------------------AAAATATTCATGCAGGAGATCTGGCTCCAAGAACTGGGCTGCGACGATCCGCTACCTGAGAGTCTTCTCAGTAAGTGGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGG........................................................2067.67460000312010000000000050041122117410100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGC.......................................................2153.4017000011020000100000003001001052000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AAATATTCATGCAGGAGATCTGG........................................................2362.1713000010000000000000000000000700000000400100000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTG.........................................................1962.0012000001000000000000001002010002001001010200000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCT......................................................2252.0010000010000000000000003002010021000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AAATATTCATGCAGGAGATCTG.........................................................2261.509100000000000000000000000000000010000012400000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCAGTAAGT....2781.139000000100000000000000000104000000000201000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCTCCAA..................................................2641.004000000100000000000000001000110000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCTCCA...................................................2540.753000000000000000000000001000010010000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCA..........21120.678000000000000100000000000002200100001100000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCTC.....................................................2350.603000000000000100000000000100001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AAAATATTCATGCAGGAGATCTG.........................................................2360.503000000000000000000000000000200000000000100000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCAGT........2390.444000010000000000000000000001200000000000000000000000000000000000
......................................................................................................................................................................................................................................................TCAGGCA-----------------------------AAAATATTCATGCAGG................................................................2350.402000000000000000000002000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCC......................................................2250.402000001000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCTT.....................................................2350.402000000100000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AAATATTCATGCAGGAGATCTGGC.......................................................2450.402000010000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CTACCTGAGAGTCTTCTCAGTAAGT....2580.383000000000000000000000000020000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................AAATATTCATGCAGGAGATC...........................................................2060.332000000000000000000000000000000010100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CTACCTGAGAGTCTTCTCAGTAAGTGG..2770.292000000000000000000000000020000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TCATGCAGGAGATCTGGCTCCAAGAAC..............................................2740.251000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCTCCAAGA................................................2840.251000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCTCCTT..................................................2640.251000000000000000000000000001000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGCTCCAAG.................................................2740.251000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCAGTA.......2490.222000000100000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCAGTAT......2590.222000000000000000000000000001100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CAGGCA-----------------------------AAAATATTCATGCAGGAG..............................................................2450.201000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CAGGCA-----------------------------AAAATATTCATGCAGGAGA.............................................................2550.201000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................CAGGCA-----------------------------AAAATATTCATGCAGGAGAT............................................................2650.201000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................................................................................................................................CAGGCA-----------------------------AAAATATTCATGCAG.................................................................2150.201000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TCAGGCA-----------------------------AAAATATTCATGCAGGAGA.............................................................2650.201000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTGGT.......................................................2160.171000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AAATATTCATGCAGGAGATCT..........................................................2160.171000000000000000000000000000000000100000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TATTCATGCAGGAGATCTC.........................................................1960.171000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................GCAGGAGATCTGGCTCCAAGAACTG............................................2560.171001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CGATCCGCTACCTGAGAGTCTTCT............2480.131000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CTACCTGAGAGTCTTCTCAGTAAG.....2480.131000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GAGAGTCTTCTCAGTAAGTGGAA2380.131000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CGATCCGCTACCTGAGAGTCTTC.............2380.131000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCAGTAAG.....2680.131000000000000000000000000000000000000000000000000000000000000001
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCAGTAAGTA...2880.131000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTCAGTTG......2590.111000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CGCTACCTGAGAGTCTTCTC...........20120.081000000000000000000000000001000000000000000000000000000000000000
droMoj3
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTGGCACCCTTTGTCATCCGTTCC-----------------------------AAAATATTTATGCAAGCGCTCTGGCTACGAGGTTTAGATTGGGACCAACCTCTGCCTGGTGAACTCCTCACCCAATGGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTAC....................................................2484.63373310030
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTACGAGG................................................2824.509900000
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCT......................................................2292.442211000110
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGC.......................................................2192.22201300043
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTACGA..................................................2622.004300010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCC........................22131.77231500080
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCT.......................23111.73191400050
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTACGAG.................................................2721.503300000
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTACG...................................................2581.38111100000
...............................................................................................................................................................................................................................................................................................ATTTATGCAAGCGCTCTGGCTACGA..................................................2521.002100010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCTG......................24110.9110900010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCTGG.....................25110.829340011
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCTGGTG...................27110.738700010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCTGGTGA..................28110.738700010
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGG........................................................2090.676600000
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTA.....................................................2390.565400010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGC.........................21130.547500020
..........................................................................................................................................................................................................................................................................................................................TTTAGATTGGGACCAACCTCTGCC........................24130.547300040
...............................................................................................................................................................................................................................................................................................ATTTATGCAAGCGCTCTGGCTACGAGG................................................2720.501100000
...............................................................................................................................................................................................................................................................................................ATTTATGCAAGCGCTCTGGCTACGAG.................................................2620.501100000
.................................................................................................................................................................................................................................................................................................TTATGCAAGCGCTCTGGCTACGAGG................................................2520.501100000
.....................................................................................................................................................................................................................................................................................................GCAAGCGCTCTGGCTACGAGG................................................2120.501100000
..........................................................................................................................................................................................................................................................................................................................TTTAGATTGGGACCAACCTCTGCCTGG.....................27110.455200021
...............................................................................................................................................................................................................................................................................................ATTTATGCAAGCGCTCTGGCTAC....................................................2380.383300000
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCTGGT....................26110.364200020
...........................................................................................................................................................................................................................................................................................................................TTAGATTGGGACCAACCTCTGC.........................22130.314400000
...........................................................................................................................................................................................................................................................................................................................TTAGATTGGGACCAACCTCTGCCTGG.....................26110.273200010
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTACGAGA................................................2840.251100000
...............................................................................................................................................................................................................................................................................................ATTTATGCAAGCGCTCTGG........................................................1990.222200000
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCC.......................23130.152000020
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTACA...................................................2580.131100000
.............................................................................................................................................................................................................................................................................................ATATTTATGCAAGCGCTCTGGCTAC....................................................2580.131100000
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCTACT...................................................2580.131100000
...............................................................................................................................................................................................................................................................................................ATTTATGCAAGCGCTCTGGCTA.....................................................2290.111100000
...............................................................................................................................................................................................................................................................................................ATTTATGCAAGCGCTCTGGCT......................................................2190.111100000
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTGGCA......................................................2290.111100000
..............................................................................................................................................................................................................................................................................................TATTTATGCAAGCGCTCTG.........................................................19100.101100000
..................................................................................................................................................................................................................................................................................................TATGCAAGCGCTCTGGCTAC....................................................20110.091100000
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCTA......................24110.091000010
..........................................................................................................................................................................................................................................................................................................................TTTAGATTGGGACCAACCTCTGCCT.......................25110.091100000
...........................................................................................................................................................................................................................................................................................................................TTAGATTGGGACCAACCTCTGCCTG......................25110.091100000
..........................................................................................................................................................................................................................................................................................................................TTTAGATTGGGACCAACCTCTGCCTG......................26110.091100000
.............................................................................................................................................................................................................................................................................................................................AGATTGGGACCAACCTCTGCCTGG.....................24110.091100000
...........................................................................................................................................................................................................................................................................................................................TTAGATTGGGACCAACCTCTGCCT.......................24110.091000010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCTGGC....................26110.091000010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCA........................22130.081000010
...........................................................................................................................................................................................................................................................................................................................TTAGATTGGGACCAACCTCTGCC........................23130.081000010
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTG..........................20130.081100000
..........................................................................................................................................................................................................................................................................................................................TTTAGATTGGGACCAACCTCTGC.........................23130.081100000
..........................................................................................................................................................................................................................................................................................................................TTTAGATTGGGACCAACCTCTGCCA.......................25130.081100000
............................................................................................................................................................................................................................................................................................................................TAGATTGGGACCAACCTCTGCCA.......................23140.071100000

Generated: 05/19/2015 at 03:57 PM