dsi_16716

five_prime_UTR [3r_22295073_22295077_-]; CDS [3r_22295033_22295072_-]; exon [3r_22295033_22295077_-]; CDS [3r_22293994_22294972_-]; exon [3r_22293956_22294972_-]; intron [3r_22294973_22295032_-]

-----#############################################------------------------------------------------------------################################################## AGATACCAACATGAGGGAGTTATTTTTTCTAGCAGCATTATTTGTAACGGGTATGTCCTAATTGGTTCTCAAGACCAATTCGATTTAAATAATAATTTCCTGGTTCTTAGGTATTGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAACGGGTGGTTT ************************************************.((.(((..((((((((.....)))))))).))).)).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
......................................................................................................................................GTATCAATGGCGAAAACGGGTGGTTT	26	0	1	1.00	1	1	0	0
..............................AGCAGCATTATTTGTAACGGGTATTGCC......................................................................................................	28	2	1	1.00	1	1	0	0
.........................................................................................................................................TCAATGGCGAAAACGGGTGGTTT	23	0	1	1.00	1	1	0	0
..ATACCAAGATGAGGGA..............................................................................................................................................	16	1	3	0.33	1	0	1	0
.....CCAACACGAGGGAGT............................................................................................................................................	15	1	12	0.08	1	0	0	1

TCTATGGTTGTACTCCCTCAATAAAAAAGATCGTCGTAATAAACATTGCCCATACAGGATTAACCAAGAGTTCTGGTTAAGCTAAATTTATTATTAAAGGACCAAGAATCCATAACGGGAAGGATAACTCCTCGCATAGTTACCGCTTTTGCCCACCAAA ************************************************.((.(((..((((((((.....)))))))).))).)).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
....................................................................AGTTCTGGTGAAGCTAAATGGAT.....................................................................	23	3	1	1.00	1	1	0	0	0	0
..................................................CCTACAGGATTAAGCAAAAGT.........................................................................................	21	3	3	0.67	2	0	2	0	0	0
....................................................................AGTTCTGGTGAAGCTAAATGAA......................................................................	22	3	8	0.13	1	1	0	0	0	0
.......................................................AGGAGTAACCAGGAGTTCC......................................................................................	19	3	15	0.07	1	0	0	0	1	0
.....GGTTGTACTCCTTCATT..........................................................................................................................................	17	2	18	0.06	1	0	0	1	0	0
.................TCAATCAAACAGATCGT..............................................................................................................................	17	2	20	0.05	1	0	0	0	0	1
......................AAAAAAGATAGTCGT...........................................................................................................................	15	1	20	0.05	1	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:22294923-22295082 -	dsi_16716	AGATACCAACATGAGGGAGTTATTTTTTCTAGCAGCATTATTTGTAACGGGTATGTCCTAAT-------TGGTTC---------------TCAA--GA-----C-----CAATT------CG-----ATTTAAA----T---------AAT-AA--T---TTCC------TGGTT---CTTAGGTATTGCCCTTCCTATTGAG---GAGCGTATCAATGGCGAAAACGGGTGGTTT
droSec2	scaffold_13:1607940-1608099 -		AGATACCAACATGCGGGAATTACTTTTTCTAGCAGCATTATTTGTAACGGGTATGTCCTAAT-------TGGTTT---------------TCAA--AA-----C-----CACTT------CG-----ATTTATA----T---------AAT-AA--T---TTCC------TGGTT---CTTAGGTATTGCCCTTCCTATTGAG---GAGCGTATCAATGGCGAAAACGGGTGGTTT
dm3	chr3R:22843859-22844014 -		AGATACCAACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAGTAGCGGGTATATATT-----------GATTT---------------TCAA--AA-----T-----CATTT------CG-----GTTTAAA----T---------AAT-AA--T---TTCC------TCGTT---CTTAGGTAATGCCCTTCCTATTGAG---GAGCGTATCAATGGCGAAAATGGGTGGTTT
droEre2	scaffold_4820:5201456-5201614 +		AGATACCAATATGAGGGAGATATTATTTCTGGCAGCATTGTTTGTAGCGGGTAAGTCCTAAT-------TGGCTT---------------TCCA---A-----C-----CATTT------CG-----ACTTAAA----T---------AAT-AA--T---TTCC------TGCAC---CTTAGGTTTCGCACTTCCCATTGAG---GAGCGTGTCAATGGCGAAAATGGGTGGTTT
droYak3	3R:23649546-23649706 +		AGATACCAGAATGAGGGAGGTATTTTTTCTAGCAGCATTATTTGTAGCGGGTAAGTTATAAT-------TGTTTT---------------TTAG--AA----CC-----CTTTT------TC-----ATTTAAA----T---------CAT-AA--T---TTCC------TGGTT---CTTAGGCTTTGCGCTTCCTATTGAA---GAGCGTGTCAATGGCGAAAATGGATGGTAT
droEug1	scf7180000409770:303000-303158 -		AGATACCAAAATGAAAGTGATCGTGGTATTGCTGGCCTTGTTGGTAGCGGGTAAGTTTAAAA------C-----T--TT-A--A------GTTTAAG-------T--A------ATATGT-TCTAAA-----A----------------GG-AA--T---TATT------TCGTT---TTCAGTTATTGCCCTTCCCATTGAG---GAGCGTGTTAATGGAGAAAATGGCTGGTAT
droBia1	scf7180000302113:3116750-3116901 -		-----CCAACATGAAGGTGTTTTTGGTTCTAACCGCTTTGCTGGCAGCAGGTAAGTTGT---C--C------------------------TGAA--GA-----T-----CG----------G-----GCTTGAA----C---------AAATAATATATCATT-------ATGATTCGTATAGCAACCGCCCTGCCCATCGAG---GAGCGCGTCAATGGCGAGAATGGCTGGTTC
droTak1	scf7180000410579:438258-438420 +		AGATACCAATATGAAAGTCCTCGTCGCCCTCTCAGTTTTAGCTGCAGCAGGTAAATTGTAAT-------ACTATT---------------TTAA--AAT--GA-A--T------ACAATA-ATAACA-----AG----G---------AAT-AA--T---TTA-------CTTTT---TTTAGTTATTGCACTTCCCATTGAG---GAGCGAGTCAATGGCGAGAATGGTTGGTAT
droEle1	scf7180000491280:890748-890910 -		GGATTTCAAGATGAGAGTTTACGTAGTTCTAGCGGCACTATTGACAGCAGGTGAGTTTAAAA------ATGTCTT---------------GTAA--AT----A-C--C------ATGCGA-TCTGAA-----AA----G---------AAT-GT--T---TTTC------CATCT---TTAAGCGAGTTCTCTTCCCATTGAG---GAGCGCGTCAATGGCGAAAACGGCTGGTTT
droRho1	scf7180000780254:20454-20615 -		AGATACCAAAATGAAGAGGTTCGTGGTTCTAGCAGCATTTTTGGCAGCAGGTAAGTTTAAAG-------AAGTAT---------------TTAA--AAT---A-T--T------GTTCGG-G--------CTAA----T---------AAG-AA--TGTTTGT-------ATTAT---TCTAGTAAGTTCACTTCCTATTGAA---GAACGTGTCAATGGCGAAAATGGCTGGTTT
droFic1	scf7180000453776:19044-19205 -		AGATACCAGTATGAAAGTAATCGTGGTTCTATCAGCTTTATTAGCAGCGGGTTTGTAAAAAC-------AATTAA---------------ATAT--TT---GA-T--A------ACTCGA-CCAAAA-----AT----T---------AAT-AT--C---TTC-------TTGAT---TTTAGTGAGTGCTCTTCCTATTGAA---GAGCGTGTAAATGGTGAAAATGGCTGGTTT
droKik1	scf7180000302810:575643-575804 +		AGATACCAATATGCAAGTGTTTATAGTTCTAGCTACTTTGCTCTTAGCAGGTAAAATTAAAT-------AAATTC-----------------AA--AAT--AA-T--T------AAGCA-AC-----AATTAAA----G---------CTA-AA--A---TTAT------TAATT---TTCAGCAAATGCACTTCCGATTGAG---GAACGCATCAATGGAGAAAATGGTTGGCTT
droAna3	scaffold_12911:3759577-3759734 -		A----CCAATATGAAAGTCTTTATTGTTTTAGCCGCTCTGCTGGCCGCTGGTAAGTGTT---TTAC----------TAAAGAAAGGACCTCCAA----------TAGGA-------------------CTCTAA----T---------AAA-AT------TAAA------TTTTT---TCTAGTGAGCGCCGTGCCCATCGAG---GAGCGTGTCAATGGCGAGAACGGCTGGTAC
droBip1	scf7180000396640:616660-616816 -		A----CCAATATGAAAGTCTTTGTTGTTTTAGCCGCTCTGTTGGCCGCTGGTGAGTAGT---TTGCTCA-------AAA----AGGACCTGCGA----------AAGGA-------------------CTCTAA----T---------AAG-AA--C---GAT-------TTTAT---TCCAGTGAGCGCCGTGCCCATCGAG---GAGCGTGTGAATGGCGAGAACGGCTGGTAC
dp5	2:8445514-8445667 -		-----CCAACATGAAAGTGTTATTTGTTCTAGCAGCCTTGTTGGCAGCAGGTGAGTTCT---C--T-CC-------AAA-T---ACTCCACTAA----------AAGGACACTC------CC-----GCTAA------T---------AAA-A-----------------ACATT---TGCAGTCAGCGCCCTTCCCGTTGAG---GAGCGCATCAACGGCGAGAATGGCTGGTTC
droPer2	scaffold_5897:117-275 -		AGCCCCCACCATGAAAGTGTTATTTGTTCTAGCAGCCGTGTTGGCAGCAGGTGAGTTCT---C--T-CC-------AAA-T---ATTCCACTAA----------AGGGACACTC------CC-----GTTAA------T---------AAA-A-----------------ACATT---TGCAGTGACTGCCCTTCCCGTTGAG---GAGCGCATCAACGGCGAGAATGGCTGGTTC
droWil2	scf2_1100000004902:7754398-7754558 +		------CAAAATGAAAGTATTCCTGGTTCTAGCTGCATTGTTGGCAGCAGGTAAGTTTC---C--T-T-AA----------------------G--GA----AT-----CACGT------CG-----CTTCAGGTGAATAAGGATTT-GAT-TA--A---TT--------CCTCT---TACAGCATGTGCTCTTCCTATTGGGGAAGAGCAAATTAATGGCGAGAACGGCTGGTTT
droVir3	scaffold_13047:9758481-9758639 +		AGATCACAGAATGAAAGTATTCCTTGTTCTAGCAGCAGTGTTGTCCGCTGGTAAGTCCCAAC-------TTTATCCTAA--------------T--AA-CTGA-ATGG-------------A-----ATT-----------------------C--C---TTACGTAGTTGGCCT---TTCAGTCAGTGCCCTGCCCATTCAG---GAGCGCATTCATGGCGAGAATGGCTGGTAT
droMoj3	scaffold_6540:9627674-9627834 -		AGTTACCGGAATGAAAGTATTTCTCGTACTAGCAGCACTCCTTGCAACAGGTCAGAAACAAT-------TTTTTTCCCGTTAGATGAAATTTTG----------TAGGT-------------------CCCTAA----C-----------------------AC------TCTTT---TTCAGTCAGCGCCCTGCCCATTCAG---GAGCGTATTCATGGCGAGAATGGTTGGTAT
droGri2	scaffold_14906:2625067-2625231 +		ATATCACAGAATGAAAGTATTGTGTGTTCTAGCAGCTCTGGTGGTCGCAGGTAAGCGCTATA------G-------TTC-G---ATTCC-TCCA--AT-----C-----GAATA------CA-----ATTTCTA----T-------CGATT-AA--T---CTT-------GGTCT---TTCAGTAAGTGCACTGCCTATCGAG---GAGCGTATTCATGGCGAGAATGGCTGGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGATACCAACATGAGGGAGTTATTTTTTCTAGCAGCATTATTTGTAACGGGTATGTCCTAAT-------TGGTTC---------------TCAA--GA-----C-----CAATT------CG-----ATTTAAA----T---------AAT-AA--T---TTCC------TGGTT---CTTAGGTATTGCCCTTCCTATTGAG---GAGCGTATCAATGGCGAAAACGGGTGGTTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................GTATCAATGGCGAAAACGGGTGGTTT	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCAATGGCGAAAACGGGTGGTTT	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AGATACCAACATGCGGGAATTACTTTTTCTAGCAGCATTATTTGTAACGGGTATGTCCTAAT-------TGGTTT---------------TCAA--AA-----C-----CACTT------CG-----ATTTATA----T---------AAT-AA--T---TTCC------TGGTT---CTTAGGTATTGCCCTTCCTATTGAG---GAGCGTATCAATGGCGAAAACGGGTGGTTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

AGATACCAACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAGTAGCGGGTATATATT-----------GATTT---------------TCAA--AA-----T-----CATTT------CG-----GTTTAAA----T---------AAT-AA--T---TTCC------TCGTT---CTTAGGTAATGCCCTTCCTATTGAG---GAGCGTATCAATGGCGAAAATGGGTGGTTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.GATACCAACATGAGGGAGT........................................................................................................................................................................................................................	19	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AG---GAGCGTATCAATGGCGAAAAT.........	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................GCACTATTAGTAGCGGGTA.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GCCCTTCCTATTGAG---GAGCGTATCAATG.................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTTCCTATTGAG---GAGCGTATCAAT..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGATACCAATATGAGGGAGATATTATTTCTGGCAGCATTGTTTGTAGCGGGTAAGTCCTAAT-------TGGCTT---------------TCCA---A-----C-----CATTT------CG-----ACTTAAA----T---------AAT-AA--T---TTCC------TGCAC---CTTAGGTTTCGCACTTCCCATTGAG---GAGCGTGTCAATGGCGAAAATGGGTGGTTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATGGGT.....	21	1	10.00	10	5	0	0	0	5	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGGT.....	19	1	4.00	4	1	0	1	0	1	1	0
.GATACCAATATGAGGGAGAT.......................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	3	1	0
.......................................................................................................................................................................................................TGAG---GAGCGTGTCAATGGC...............	19	1	3.00	3	0	0	0	0	0	3	0
.....................................................................................................................................................................................................ATTGAG---GAGCGTGTCAATGGC...............	21	1	3.00	3	1	0	0	0	1	1	0
.....................ATTATTTCTGGCAGCATTGTTT.................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	1	1	0
................................................................................................................................................................................................TTCCCATTGAG---GAGCGTGTCAAT..................	23	1	2.00	2	0	0	0	0	0	2	0
.GATACCAATATGAGGGAG.........................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0
.........................................................................................................................................................................................................AG---GAGCGTGTCAATGGCGAAAATGGGT.....	27	1	2.00	2	2	0	0	0	0	0	0
....................................................................................................................................................................................................CATTGAG---GAGCGTGTCAAT..................	19	1	2.00	2	2	0	0	0	0	0	0
..................GATATTATTTCTGGCAGCATTGTT..................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
..................................................................................................................................................................................................CCCATTGAG---GAGCGTGTCAATGGC...............	24	1	1.00	1	1	0	0	0	0	0	0
............................CTGGCAGCATTGTTTGTAGCGG..........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................TGAG---GAGCGTGTCAATGGCGAAAATGG.......	27	1	1.00	1	0	0	0	0	1	0	0
.......................TATTTCTGGCAGCATTGTTTGTAGCGG..........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
.....................ATTATTTCTGGCAGCATTGTTTGTAGC............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................ATTATTTCTGGCAGCATTGT...................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........ATGAGGGAGATATTATTTCTGGC...........................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................AGCGTGTCAATGGCGAAAATGGGT.....	24	1	1.00	1	0	0	0	0	0	1	0
............GAGGGAGATATTATTTCTGGC...........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................TTGAG---GAGCGTGTCAATGGCGA.............	22	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................CATTGAG---GAGCGTGTCAATGGCGA.............	24	1	1.00	1	0	0	0	0	0	1	0
.GATACCAATATGAGGGAGATATT....................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGGTGGTTT	24	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................ACTTCCCATTGAG---GAGCGTGTC.....................	22	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................CTTCCCATTGAG---GAGCGTGTC.....................	21	1	1.00	1	0	0	0	0	0	1	0
....................TATTATTTCTGGCAGCATT.....................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................CATTGAG---GAGCGTGTCAATGGCGAAA...........	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................GAG---GAGCGTGTCAATGGCGAA............	21	1	1.00	1	1	0	0	0	0	0	0
...................ATATTATTTCTGGCAGCATTGT...................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
AGATACCAATATGAGGGA..........................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.....................ATTATTTCTGGCAGCATT.....................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.....................ATTATTTCTGGCAGCATTGTTTG................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATG........	20	1	1.00	1	0	0	0	0	1	0	0
..................................GCATTGTTTGTAGCGGGT........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................ATGGCGAAAATGGGTGGT..	18	1	1.00	1	1	0	0	0	0	0	0
..................................GCATTGTTTGTAGCGGGTTTC.....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................TGAG---GAGCGTGTCAATGGCGA.............	21	1	1.00	1	1	0	0	0	0	0	0
..........................TTCTGGCAGCATTGTTTGTAGC............................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGGTGGTT.	23	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATG........	19	1	1.00	1	0	0	0	0	0	1	0
..................GATATTATTTCTGGCAGCATTGT...................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0

droYak3

AGATACCAGAATGAGGGAGGTATTTTTTCTAGCAGCATTATTTGTAGCGGGTAAGTTATAAT-------TGTTTT---------------TTAG--AA----CC-----CTTTT------TC-----ATTTAAA----T---------CAT-AA--T---TTCC------TGGTT---CTTAGGCTTTGCGCTTCCTATTGAA---GAGCGTGTCAATGGCGAAAATGGATGGTAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.GATACCAGAATGAGGGAGGT.......................................................................................................................................................................................................................	20	1	79.00	79	0	11	0	0	2	1	65	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATGGATGGT..	24	1	45.00	45	0	2	0	0	0	0	43	0	0	0	0
..................................................................................................................................................................................................CCTATTGAA---GAGCGTGTCAAT..................	21	1	20.00	20	0	4	0	0	0	1	15	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATGGATGGT..	25	1	17.00	17	0	1	0	0	0	0	16	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATGGATG....	22	1	16.00	16	0	3	0	0	0	0	13	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATGGATGGTAT	26	1	16.00	16	0	2	0	0	0	0	14	0	0	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGATGGT..	22	1	15.00	15	0	1	0	0	0	0	14	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATGGATGGT..	26	1	14.00	14	0	0	0	0	0	0	14	0	0	0	0
..........ATGAGGGAGGTATTTTTTCTAGCAGC........................................................................................................................................................................................................	26	1	13.00	13	0	0	0	0	0	0	13	0	0	0	0
..ATACCAGAATGAGGGAGGT.......................................................................................................................................................................................................................	19	1	12.00	12	0	3	0	0	0	0	9	0	0	0	0
AGATACCAGAATGAGGGAGGT.......................................................................................................................................................................................................................	21	1	12.00	12	0	0	0	0	0	0	12	0	0	0	0
..........ATGAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	23	1	10.00	10	0	0	0	0	0	0	10	0	0	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGATG....	20	1	8.00	8	0	3	0	0	0	0	5	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATGGAT.....	21	1	8.00	8	0	3	0	0	0	0	5	0	0	0	0
................................................................................................................................................................................................TTCCTATTGAA---GAGCGTGTCAAT..................	23	1	8.00	8	0	4	0	0	0	0	4	0	0	0	0
.....................................................................................................................................................................................................ATTGAA---GAGCGTGTCAATGGC...............	21	1	8.00	8	0	2	0	0	0	0	6	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAAAATGGATGGT..	29	1	8.00	8	0	0	0	0	0	0	8	0	0	0	0
.......................................................................................................................................................................................................................AATGGCGAAAATGGATGGT..	19	1	7.00	7	0	0	0	0	0	0	7	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATGGATG....	24	1	7.00	7	0	1	0	0	0	0	6	0	0	0	0
.GATACCAGAATGAGGGAGG........................................................................................................................................................................................................................	19	1	6.00	6	0	1	0	0	0	0	5	0	0	0	0
.GATACCAGAATGAGGGAGGTA......................................................................................................................................................................................................................	21	1	6.00	6	0	1	0	0	0	0	5	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATGGAT.....	23	1	6.00	6	0	2	0	0	0	0	4	0	0	0	0
......................................................................................................................................................................................................................CAATGGCGAAAATGGATGGT..	20	1	6.00	6	0	1	0	0	0	1	4	0	0	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGATGGTAT	24	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0
............................CTAGCAGCATTATTTGTAGCGGGC........................................................................................................................................................................................	24	1	5.00	5	0	1	0	0	0	0	4	0	0	0	0
...............................................................................................................................................................................................................AGCGTGTCAATGGCGAAAATGGATGGT..	27	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0
................................................................................................................................................................................................TTCCTATTGAA---GAGCGTGTC.....................	20	1	5.00	5	1	2	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGAT.....	19	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0
.....................ATTTTTTCTAGCAGCATTATTTGT...............................................................................................................................................................................................	24	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TATTGAA---GAGCGTGTCAATGGC...............	22	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
...................................................................................................................................................................................................CTATTGAA---GAGCGTGTCAAT..................	20	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.................................................................................................................................................................................................TCCTATTGAA---GAGCGTGTC.....................	19	1	4.00	4	0	3	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................TTCCTATTGAA---GAGCGTGT......................	19	1	4.00	4	0	0	0	0	0	1	3	0	0	0	0
.................................................................................................................................................................................................TCCTATTGAA---GAGCGTGTCAAT..................	22	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
...............................................................................................................................................................................................CTTCCTATTGAA---GAGCGTGTC.....................	21	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................................AA---GAGCGTGTCAATGGCGAAAATGGATG....	28	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATGGATG....	23	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
............GAGGGAGGTATTTTTTCTAGCAGC........................................................................................................................................................................................................	24	1	4.00	4	0	1	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................TTTGCGCTTCCTATTGAA---GAGC..........................	22	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...................................................................................................................................................................................................CTATTGAA---GAGCGTGTCAATGGC...............	23	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.....CCAGAATGAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
........GAATGAGGGAGGTATTTTTTCTAGCAGC........................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.........................................................................................................................................................................................................AA---GAGCGTGTCAATGGCGAAAATG........	24	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATGGATGGTAT	27	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.GATACCAGAATGAGGGAG.........................................................................................................................................................................................................................	18	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAAAATGGATGGT..	28	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
........GAATGAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.....................ATTTTTTCTAGCAGCATTATTT.................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CCTATTGAA---GAGCGTGTCAATGGC...............	24	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
...........................................................................................................................................................................................TGCGCTTCCTATTGAA---GAGC..........................	20	1	3.00	3	0	0	0	0	0	2	1	0	0	0	0
...............................................................................................................................................................................................CTTCCTATTGAA---GAGCGTGTCAATGGC...............	27	1	3.00	3	1	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................TTGCGCTTCCTATTGAA---GAGC..........................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................TTCCTATTGAA---GAGCGTGTCAATGGC...............	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AA---GAGCGTGTCAATGGCGAAAATGGAT.....	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................TGTCAATGGCGAAAATGGATGG...	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........TGAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATGG.......	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................TTTTCTAGCAGCATTATTTGT...............................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAAAATGGAT.....	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......AGAATGAGGGAGGTATTTTTTCTAGCAGC........................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................CTTTGCGCTTCCTATTGAA---GAGC..........................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................AATGGCGAAAATGGATGGTAT	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................GTCAATGGCGAAAATGGATGG...	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................GAA---GAGCGTGTCAATGGCGAA............	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.GATACCAGAATGAGGGAGGTATT....................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATGGATGGTAT	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATGGATGG...	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...TACCAGAATGAGGGAGGTA......................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................TGAA---GAGCGTGTCAATGGC...............	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CAATGGCGAAAATGGATGGTAT	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................AA---GAGCGTGTCAATGGCGAAAAT.........	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................GGTATTTTTTCTAGCAGCATTATTTGT...............................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATGGATGG...	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.GATACCAGAATGAGGGA..........................................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0
........................................................................................................................................................................................................GAA---GAGCGTGTCAATGGCGA.............	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................GGCGAAAATGGATGGTAT	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....ACCAGAATGAGGGAGGTATT....................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAAAATG........	18	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
.......................................................................................................................................................................................GCTTTGCGCTTCCTATTGAA---GAG...........................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................TTTCTAGCAGCATTATTTGT...............................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
............GAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..........................TTCTAGCAGCATTATTTGTA..............................................................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................AGCGTGTCAATGGCGAAAATGGAT.....	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................CTTCCTATTGAA---GAGCGTGTCAAT..................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................TGAA---GAGCGTGTCAATGGCGAAAATGGAT.....	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................ATTTTTTCTAGCAGCATTATTTGTA..............................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................GGTATTTTTTCTAGCAGCA.......................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TTTGCGCTTCCTATTGAA---GAGCGTG.......................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATGGATGGTA.	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................ATTGAA---GAGCGTGTCAATGGCGA.............	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.......AGAATGAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................TTCTAGCAGCATTATTTGT...............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CTTAGGCTTTGCGCTTCCTATTGAA---GAGC..........................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................AGCGTGTCAATGGCGAAAATGGATGGTAT	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................TCCTATTGAA---GAGCGTGT......................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....ACCAGAATGAGGGAGGT.......................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......................TTTTTCTAGCAGCATTATTT.................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................GCTTTGCGCTTCCTATTGAA---..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ATTGAA---GAGCGTGTCAATGGCGAAAATG........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................CCTATTGAA---GAGCGTGTCAATGGCG..............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATGGA......	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.GATACCAGAATGAGGGAGGG.......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCTTCCTATTGAA---GAGCGTGTCA....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GATACCAGAATGAGGGAGGA.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................GGCTTTGCGCTTCCTATTGAA---G.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................TTTTTTCTAGCAGCATTATTT.................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............GGGAGGTATTTTTTCTAGCAGC........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAAAATGG.......	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........ATGAGGGAGGTATTTTTTCTAGCA..........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................ATGGCGAAAATGGATGGTAT	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................GCTTCCTATTGAA---GAGCGTGTCAAT..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATGGAT.....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCCTATTGAA---GAGCGTGTCAA...................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................TGTCAATGGCGAAAATGGATGGT..	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................CCTATTGAA---GAGCGTGTCAATGG................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TTTGCGCTTCCTATTGAA---GAG...........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................ATGGCGAAAATGGATGGT..	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..ATACCAGAATGAGGGAGGTATTTTTT................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................CTTTGCGCTTCCTATTGAA---GAG...........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CGCTTCCTATTGAA---GAGCGTGTCAATGGC...............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................GCTTCCTATTGAA---GAGCGTGTCAATGGC...............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...TACCAGAATGAGGGAGGT.......................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................TTTCTAGCAGCATTATTT.................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGAA---GAGCGTGTCAATGGCGA.............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................CTATTGAA---GAGCGTGTCAATG.................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGAA---GAGCGTGTCAATGGCGAAAAT.........	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CTAGCAGCATTATTTGTAGCG...........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................TCTAGCAGCATTATTTGTAGCGGG.........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAAA...........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAAAATGGATG....	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................TTGCGCTTCCTATTGAA---GAG...........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAAA...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAAAATG........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................GAA---GAGCGTGTCAATGGCG..............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..ATACCAGAATGAGGGAGG........................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................TTTTTTCTAGCAGCATTATTTGTA..............................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................AGCATTATTTGTAGCGGG.........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................TTTTCTAGCAGCATTATTTGTAGCGGGCT.......................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................GTATTTTTTCTAGCAGCATTATTTGT...............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAAAATGGATG....	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................AGCATTATTTGTAGCGGGC........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................AA---GAGCGTGTCAATGGCGA.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATGGATGGG..	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................ATTTTTTCTAGCAGCATTATTTGTAGCGG..........................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................TTTTTCTAGCAGCATTATTTGTA..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................ATTTTTTCTAGCAGCATTATT..................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TCAATGGCGAAAATGGATGGT..	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAAAATGGATGGC..	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
AGATACCAGAATGAGGGAG.........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................TGAA---GAGCGTGTCAATGGCGAA............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................GCTTCCTATTGAA---GAGCGT........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAATG........	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAAAATGGAT.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................TTTCTAGCAGCATTATTTGTAGCGGGCT.......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................TGAA---GAGCGTGTCAATGGCGAAAATGG.......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................TTCCTATTGAA---GAGCGTGTCA....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......CAGAATGAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TCAATGGCGAAAATGGAT.....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAAAATGGATA....	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................CCTATTGAA---GAGCGTGTCAATG.................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGCGTGTCAATGGCGAAAATGGATG....	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................TTGAA---GAGCGTGTCAATGGCGAAA...........	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAAAAT.........	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................GAA---GAGCGTGTCAATGGCGAAAATGGAT.....	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................TATTGAA---GAGCGTGTCAATGG................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................TGTCAATGGCGAAAATGGATG....	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................CTTCCTATTGAA---GAGCGTGTCAATG.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....CCAGAATGAGGGAGGTATTTTTTCTAGCA..........................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................GGCTTTGCGCTTCCTATTGAA---GAGCGTGTC.....................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................ATTGAA---GAGCGTGTCAATGGCGAA............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GCTTTGCGCTTCCTATTGA..................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAAAATGGATGG...	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................CCTATTGAA---GAGCGTGTCAATGGG...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....ACCAGAATGAGGGAGGTAT.....................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................AGCAGCATTATTTGTAGCGGGC........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................CTAGCAGCATTATTTGTAGCGG..........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....ACCAGAATGAGGGAGGTATTTTTTCTAGC...........................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................CTAGCAGCATTATTTGTAGC............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................CAATGGCGAAAATGGATGG...	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................A---GAGCGTGTCAATGGCGAA............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGCGTGTCAATGGCGAAAATGGA......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GCAGCATTATTTGTAGCGG..........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GAATGAGGGAGGTATTTTTTCTA.............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................CTTCCTATTGAA---GAGCGTGT......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........ATGAGGGAGGTATTTTTTCTAGCAGCATT.....................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................TGAA---GAGCGTGTCAATGGCGAAAATGGA......	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................ATTGAA---GAGCGTGTCAATGGCG..............	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................TTCCTATTGAA---GAGCGTGTCAATGGCGAA............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................CCTATTGAA---GAGCGTGTCA....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................AGCATTATTTGTAGCGGGCT.......................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AGATACCAAAATGAAAGTGATCGTGGTATTGCTGGCCTTGTTGGTAGCGGGTAAGTTTAAAA------C-----T--TT-A--A------GTTTAAG-------T--A------ATATGT-TCTAAA-----A----------------GG-AA--T---TATT------TCGTT---TTCAGTTATTGCCCTTCCCATTGAG---GAGCGTGTTAATGGAGAAAATGGCTGGTAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

-----CCAACATGAAGGTGTTTTTGGTTCTAACCGCTTTGCTGGCAGCAGGTAAGTTGT---C--C------------------------TGAA--GA-----T-----CG----------G-----GCTTGAA----C---------AAATAATATATCATT-------ATGATTCGTATAGCAACCGCCCTGCCCATCGAG---GAGCGCGTCAATGGCGAGAATGGCTGGTTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGATACCAATATGAAAGTCCTCGTCGCCCTCTCAGTTTTAGCTGCAGCAGGTAAATTGTAAT-------ACTATT---------------TTAA--AAT--GA-A--T------ACAATA-ATAACA-----AG----G---------AAT-AA--T---TTA-------CTTTT---TTTAGTTATTGCACTTCCCATTGAG---GAGCGAGTCAATGGCGAGAATGGTTGGTAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGATTTCAAGATGAGAGTTTACGTAGTTCTAGCGGCACTATTGACAGCAGGTGAGTTTAAAA------ATGTCTT---------------GTAA--AT----A-C--C------ATGCGA-TCTGAA-----AA----G---------AAT-GT--T---TTTC------CATCT---TTAAGCGAGTTCTCTTCCCATTGAG---GAGCGCGTCAATGGCGAAAACGGCTGGTTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGATACCAAAATGAAGAGGTTCGTGGTTCTAGCAGCATTTTTGGCAGCAGGTAAGTTTAAAG-------AAGTAT---------------TTAA--AAT---A-T--T------GTTCGG-G--------CTAA----T---------AAG-AA--TGTTTGT-------ATTAT---TCTAGTAAGTTCACTTCCTATTGAA---GAACGTGTCAATGGCGAAAATGGCTGGTTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGATACCAGTATGAAAGTAATCGTGGTTCTATCAGCTTTATTAGCAGCGGGTTTGTAAAAAC-------AATTAA---------------ATAT--TT---GA-T--A------ACTCGA-CCAAAA-----AT----T---------AAT-AT--C---TTC-------TTGAT---TTTAGTGAGTGCTCTTCCTATTGAA---GAGCGTGTAAATGGTGAAAATGGCTGGTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGATACCAATATGCAAGTGTTTATAGTTCTAGCTACTTTGCTCTTAGCAGGTAAAATTAAAT-------AAATTC-----------------AA--AAT--AA-T--T------AAGCA-AC-----AATTAAA----G---------CTA-AA--A---TTAT------TAATT---TTCAGCAAATGCACTTCCGATTGAG---GAACGCATCAATGGAGAAAATGGTTGGCTT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A----CCAATATGAAAGTCTTTATTGTTTTAGCCGCTCTGCTGGCCGCTGGTAAGTGTT---TTAC----------TAAAGAAAGGACCTCCAA----------TAGGA-------------------CTCTAA----T---------AAA-AT------TAAA------TTTTT---TCTAGTGAGCGCCGTGCCCATCGAG---GAGCGTGTCAATGGCGAGAACGGCTGGTAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................GTGCCCATCGAG---GAGCGTGTC.....................	21	1	10.00	10	0	1	0	1	8	0
......................................................................................................................................................................................GTGAGCGCCGTGCCCATCGAG---GAGC..........................	25	1	6.00	6	0	0	0	0	4	2
......................ATTGTTTTAGCCGCTCTGCTGGC...............................................................................................................................................................................................	23	1	4.00	4	1	3	0	0	0	0
............................................................................................................................................................................................GCCGTGCCCATCGAG---GAGCGTGTC.....................	24	1	4.00	4	1	0	0	0	3	0
..........ATGAAAGTCTTTATTGTTTTAGCCGCT.......................................................................................................................................................................................................	27	1	4.00	4	1	0	0	0	0	3
..............................................................................................................................................................................................CGTGCCCATCGAG---GAGCGTGTCAATGGC...............	28	1	3.00	3	0	0	0	0	3	0
.........................GTTTTAGCCGCTCTGCTGGC...............................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0	0
............................................................................................................................................................................................GCCGTGCCCATCGAG---GAGC..........................	19	1	3.00	3	1	2	0	0	0	0
......................................................................................................................................................................................................................CAATGGCGAGAACGGCTG....	18	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAGAACGGCT.....	21	1	3.00	3	1	0	0	0	2	0
.....................................................................................................................................................................................................ATCGAG---GAGCGTGTCAATGGCGAGAAC.........	27	1	3.00	3	1	0	0	0	2	0
...............................................................................................................................................................................................GTGCCCATCGAG---GAGCGTGTCAATGGC...............	27	1	3.00	3	0	0	0	0	3	0
.........................GTTTTAGCCGCTCTGCTGGCCGCTGT.........................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAGAACGGCT.....	25	1	2.00	2	1	0	0	0	1	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAGAACGGCTG....	24	1	2.00	2	1	0	0	0	1	0
....................................................................................................................................................................................................................GTCAATGGCGAGAACGGCTGGTAC	24	1	2.00	2	1	1	0	0	0	0
...........................................................................................................................................................................................CGCCGTGCCCATCGAG---GAGCGTGTC.....................	25	1	2.00	2	0	0	0	0	2	0
.........................................................................................................................................................................................AGCGCCGTGCCCATCGAG---GA............................	20	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................GCCCATCGAG---GAGCGTGTCAATGGC...............	25	1	2.00	2	0	1	0	0	1	0
..................CTTTATTGTTTTAGCCGCT.......................................................................................................................................................................................................	19	1	2.00	2	0	1	1	0	0	0
....................................................................................................................................................................................................CATCGAG---GAGCGTGTCAATGGC...............	22	1	2.00	2	1	0	0	0	1	0
........................................................................................................................................................................................................GAG---GAGCGTGTCAATGGCGAGAAC.........	24	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................AATGGCGAGAACGGCTGGTAC	21	1	2.00	2	0	1	0	0	1	0
................................................................................................................................................................................................TGCCCATCGAG---GAGCGTGTCA....................	21	1	2.00	2	2	0	0	0	0	0
.........................GTTTTAGCCGCTCTGCTGGCCGCT...........................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	0	1
.........................GTTTTAGCCGCTCTGCTGGCC..............................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
......................ATTGTTTTAGCCGCTCTGCTGGCCGCT...........................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................GTCAATGGCGAGAACGGC......	18	1	2.00	2	0	1	0	0	1	0
..................CTTTATTGTTTTAGCCGCTCTGCTGGCCG.............................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0	0
......................ATTGTTTTAGCCGCTCTGCTGG................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............GAAAGTCTTTATTGTTTTAGCCG.........................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAGAACGGCTGGTG.	25	1	1.00	1	0	0	0	0	1	0
............GAAAGTCTTTATTGTTTTAGCC..........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................GTCTTTATTGTTTTAGCCG.........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
...........................TTTAGCCGCTCTGCTGGCCGCT...........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................AGCGTGTCAATGGCGAGAACGGCTGGT..	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAGAAC.........	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................CGTGTCAATGGCGAGAACGGCTG....	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAGAACGG.......	23	1	1.00	1	0	1	0	0	0	0
..............................AGCCGCTCTGCTGGCCGCTGT.........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................GCGCCGTGCCCATCGAG---GAGCG.........................	22	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................GTCAATGGCGAGAACGGCTGGT..	22	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................GAG---GAGCGTGTCAATGGCGAG............	21	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................GTGTCAATGGCGAGAACGGCTGGTAC	26	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................GTGCCCATCGAG---GAGCGTGT......................	20	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................TCAATGGCGAGAACGGCTGGTAC	23	1	1.00	1	1	0	0	0	0	0
..................CTTTATTGTTTTAGCCGCTCTGCTGGCC..............................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................AGCGCCGTGCCCATCGAG---GAGCGTGTC.....................	27	1	1.00	1	0	0	0	0	1	0
...................TTTATTGTTTTAGCCGCT.......................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................CAATGGCGAGAACGGCTGGG..	20	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................CGAG---GAGCGTGTCAATGGCGA.............	21	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................GCGCCGTGCCCATCGAG---GAGC..........................	21	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................G---GAGCGTGTCAATGGCGAGA...........	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................GCCCATCGAG---GAGCGTGTC.....................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................ATCGAG---GAGCGTGTCAATGG................	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAGAAC.........	19	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................GTGAGCGCCGTGCCCATCGA..................................	20	1	1.00	1	0	0	0	0	1	0
................................CCGCTCTGCTGGCCGCTGTG........................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................ATCGAG---GAGCGTGTCAATGGC...............	21	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................GTGTCAATGGCGAGAACGGCTGGTA.	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................ATGGCGAGAACGGCTGGTA.	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AATGGCGAGAACGGCTGG...	18	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................AATGGCGAGAACGGCTGGTA.	20	1	1.00	1	1	0	0	0	0	0
.........................GTTTTAGCCGCTCTGCTGGCCG.............................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................GTCTTTATTGTTTTAGCCGCT.......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................CGTGCCCATCGAG---GAGCGTGTC.....................	22	1	1.00	1	0	0	0	0	1	0
.................TCTTTATTGTTTTAGCCGCTCTGCT..................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAGAACGG.......	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................AGCGCCGTGCCCATCGAG---GAGC..........................	22	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................CGAG---GAGCGTGTCAATGGCGAGA...........	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................GCGTGTCAATGGCGAGAACG........	20	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................GCCCATCGAG---GAGCGTGTCAA...................	21	1	1.00	1	0	0	0	0	1	0
................GTCTTTATTGTTTTAGCC..........................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................CGTGCCCATCGAG---GAGCGT........................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................CCATCGAG---GAGCGTGTCAAT..................	20	1	1.00	1	0	1	0	0	0	0
................GTCTTTATTGTTTTAGCCGCTCTGCTG.................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GTGTCAATGGCGAGAACGGCTG....	22	1	1.00	1	0	0	0	0	1	0
..........................TTTTAGCCGCTCTGCTGGCCGCT...........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............AGTCTTTATTGTTTTAGCCGC........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............GAAAGTCTTTATTGTTTTAGCCGCTCT.....................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................GAGCGCCGTGCCCATCGAG---GA............................	21	1	1.00	1	1	0	0	0	0	0
............GAAAGTCTTTATTGTTTTAGCCGCTCTG....................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................GTGAGCGCCGTGCCCATCGAG---GAGCGT........................	27	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................GAGCGTGTCAATGGCGAGA...........	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................G---GAGCGTGTCAATGGCGAGAAC.........	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................ATGGCGAGAACGGCTGGTAC	20	1	1.00	1	0	0	0	0	1	0
.................................CGCTCTGCTGGCCGCTGTG........................................................................................................................................................................................	19	4	0.25	1	1	0	0	0	0	0

droBip1

A----CCAATATGAAAGTCTTTGTTGTTTTAGCCGCTCTGTTGGCCGCTGGTGAGTAGT---TTGCTCA-------AAA----AGGACCTGCGA----------AAGGA-------------------CTCTAA----T---------AAG-AA--C---GAT-------TTTAT---TCCAGTGAGCGCCGTGCCCATCGAG---GAGCGTGTGAATGGCGAGAACGGCTGGTAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

-----CCAACATGAAAGTGTTATTTGTTCTAGCAGCCTTGTTGGCAGCAGGTGAGTTCT---C--T-CC-------AAA-T---ACTCCACTAA----------AAGGACACTC------CC-----GCTAA------T---------AAA-A-----------------ACATT---TGCAGTCAGCGCCCTTCCCGTTGAG---GAGCGCATCAACGGCGAGAATGGCTGGTTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................G---GAGCGCATCAACGGCGAGA...........	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CTTCCCGTTGAG---GAGCGCATCAACGGC...............	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................CAGCGCCCTTCCCGTTGAG---GAGC..........................	23	1	2.00	2	0	0	0	0	2	0	0	0	0	0
.......................................................................................................................................................................................................TGAG---GAGCGCATCAACGGCGAGA...........	23	1	2.00	2	0	1	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................GAG---GAGCGCATCAACGGCGAGA...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CAGCGCCCTTCCCGTTGAG---GA............................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................GTCAGCGCCCTTCCCGTT....................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GCAGTCAGCGCCCTTCCC.......................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GTTGAG---GAGCGCATCAACGGCGA.............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GAG---GAGCGCATCAACGGCGA.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AGCGCCCTTCCCGTTGAG---GAGC..........................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................GCGCCCTTCCCGTTGAG---GA............................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGAG---GAGCGCATCAACGGC...............	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................G---GAGCGCATCAACGGCGA.............	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................CATCAACGGCGAGAATGGCTGG...	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................GCCCTTCCCGTTGAG---GAGC..........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TGAG---GAGCGCATCAACGG................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................GCATCAACGGCGAGAATGGCTG....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................GTTATTTGTTCTAGCAGCCTTGTTG.................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................GTGTTATTTGTTCTAGCAGC........................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........ATGAAAGTGTTATTTGTTCTAGCAGC........................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................GGCGAGAATGGCTGGTTC	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................AGCCTTGTTGGCAGCAGTCA.......................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCCCCCACCATGAAAGTGTTATTTGTTCTAGCAGCCGTGTTGGCAGCAGGTGAGTTCT---C--T-CC-------AAA-T---ATTCCACTAA----------AGGGACACTC------CC-----GTTAA------T---------AAA-A-----------------ACATT---TGCAGTGACTGCCCTTCCCGTTGAG---GAGCGCATCAACGGCGAGAATGGCTGGTTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................GTTATTTGTTCTAGCAGCCGTGTTGGC...............................................................................................................................................................................................	27	1	5.00	5	4	0	0	0	0	1
......................TTTGTTCTAGCAGCCGTGTTGGCAG.............................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	4
......CACCATGAAAGTGTTATTTGTTCTAGC...........................................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0
.........................GTTCTAGCAGCCGTGTTGGC...............................................................................................................................................................................................	20	1	3.00	3	0	0	1	0	0	2
.........................GTTCTAGCAGCCGTGTTGGCAG.............................................................................................................................................................................................	22	1	3.00	3	0	0	2	0	0	1
........................TGTTCTAGCAGCCGTGTTGGCAG.............................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0
...........................TCTAGCAGCCGTGTTGGC...............................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
......................TTTGTTCTAGCAGCCGTGTTGGCA..............................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
......................TTTGTTCTAGCAGCCGTGTTGGC...............................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.....................ATTTGTTCTAGCAGCCGTGTTGGCAG.............................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
....................................................................................................................................................................................CAGTGACTGCCCTTCCCGTT....................................	20	1	2.00	2	1	0	0	0	0	1
.........................GTTCTAGCAGCCGTGTTGGCAGCAGT.........................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
..........................................................................................................................................................................................CTGCCCTTCCCGTTGAG---GAG...........................	20	1	1.00	1	0	0	1	0	0	0
...............AGTGTTATTTGTTCTAGCAGCCGT.....................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
........................TGTTCTAGCAGCCGTGTTGGC...............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................GCAGTGACTGCCCTTCCCGT.....................................	20	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................GAG---GAGCGCATCAACGGCGAGAATG........	25	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................TGAG---GAGCGCATCAACGGCGAGA...........	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................ATCAACGGCGAGAATGGC......	18	1	1.00	1	0	0	0	1	0	0
...................TTATTTGTTCTAGCAGCCGTGTT..................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................GTTATTTGTTCTAGCAGCCGTGTTGGCAG.............................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................CAGTGACTGCCCTTCCCGT.....................................	19	1	1.00	1	0	1	0	0	0	0
AGCCCCCACCATGAAAGT..........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.............AAAGTGTTATTTGTTCTAGC...........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................GCAGTGACTGCCCTTCCCGTTGAG---G.............................	25	1	1.00	1	0	1	0	0	0	0
..................GTTATTTGTTCTAGCAGCCGTGTTGGCA..............................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.........................GTTCTAGCAGCCGTGTTGGCA..............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................GTTGAG---GAGCGCATCAACGGC...............	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................TGAG---GAGCGCATCAACGGC...............	19	1	1.00	1	0	1	0	0	0	0
......................TTTGTTCTAGCAGCCGTGTT..................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................ATCAACGGCGAGAATGGCT.....	19	1	1.00	1	0	1	0	0	0	0
..................GTTATTTGTTCTAGCAGCCGT.....................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................CTTCCCGTTGAG---GAGCGCAT......................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................GAGCGCATCAACGGCGAG............	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................CGCATCAACGGCGAGAATGGC......	21	1	1.00	1	0	0	1	0	0	0
..................GTTATTTGTTCTAGCAGC........................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.....................ATTTGTTCTAGCAGCCGTGTTGGC...............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droWil2

------CAAAATGAAAGTATTCCTGGTTCTAGCTGCATTGTTGGCAGCAGGTAAGTTTC---C--T-T-AA----------------------G--GA----AT-----CACGT------CG-----CTTCAGGTGAATAAGGATTT-GAT-TA--A---TT--------CCTCT---TACAGCATGTGCTCTTCCTATTGGGGAAGAGCAAATTAATGGCGAGAACGGCTGGTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGGCTGGTT.	25	1	27.00	27	0	8	19	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAAC.........	19	1	14.00	14	0	13	1	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGGCTGGTT.	26	1	9.00	9	0	3	6	0	0
...................................................................................................................................................................................................................AATTAATGGCGAGAACGGCTGGTT.	24	1	9.00	9	0	0	9	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGGCTGGT..	26	1	8.00	8	0	4	4	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGGCTG....	24	1	8.00	8	0	4	4	0	0
....................................................................................................................................................................................................................ATTAATGGCGAGAACGGCTGGTT.	23	1	8.00	8	0	2	6	0	0
..................................................................................................................................................................................................CCTATTGGGGAAGAGCAAATTAATGGC...............	27	1	7.00	7	0	1	6	0	0
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGGCT.....	21	1	7.00	7	0	1	6	0	0
.....................................................................................................................................................................................AGCATGTGCTCTTCCTATTGGGGAAGA............................	27	1	7.00	7	0	3	4	0	0
................GTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	20	1	7.00	7	3	3	0	1	0
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGGCTGGTTT	26	1	7.00	7	0	4	3	0	0
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGGCTGGT..	24	1	7.00	7	0	1	6	0	0
........................................................................................................................................................................................ATGTGCTCTTCCTATTGGGGAAGA............................	24	1	6.00	6	2	0	4	0	0
..................ATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	18	1	6.00	6	6	0	0	0	0
............GAAAGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	24	1	6.00	6	0	3	3	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGGCTG....	23	1	5.00	5	0	2	3	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGG.......	21	1	5.00	5	0	2	3	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGGCT.....	22	1	5.00	5	0	1	4	0	0
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGG.......	19	1	5.00	5	0	3	2	0	0
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGGC......	20	1	5.00	5	0	0	5	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACG........	20	1	5.00	5	0	2	3	0	0
...................................................................................................................................................................................................................AATTAATGGCGAGAACGGCTGGT..	23	1	5.00	5	0	5	0	0	0
....................................................................................................................................................................................................TATTGGGGAAGAGCAAATTAATGGCGA.............	27	1	4.00	4	0	1	3	0	0
....................................................................................................................................................................................................TATTGGGGAAGAGCAAATTAATGGC...............	25	1	4.00	4	0	1	2	1	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGGCTGGTT.	27	1	4.00	4	0	3	1	0	0
....................................................................................................................................................................................................................ATTAATGGCGAGAACGGCTGGTTT	24	1	4.00	4	0	3	1	0	0
...................................................................................................................................................................................................CTATTGGGGAAGAGCAAATTAATGGC...............	26	1	4.00	4	0	0	4	0	0
........................................................................................................................................................................................ATGTGCTCTTCCTATTGGGGAA..............................	22	1	4.00	4	0	1	3	0	0
..............AAGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	22	1	4.00	4	0	3	1	0	0
......................................................................................................................................................................................................................TAATGGCGAGAACGGCTGGTT.	21	1	4.00	4	0	0	4	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGGCT.....	23	1	4.00	4	0	0	4	0	0
.........................GTTCTAGCTGCATTGTTGGC...............................................................................................................................................................................................	20	1	4.00	4	0	4	0	0	0
.........AATGAAAGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	27	1	4.00	4	1	3	0	0	0
....................................................................................................................................................................................................................ATTAATGGCGAGAACGGCTG....	20	1	4.00	4	0	3	1	0	0
.................................................................................................................................................................................................TCCTATTGGGGAAGAGCAAATTAATGGC...............	28	1	4.00	4	0	0	4	0	0
.....................................................................................................................................................................................AGCATGTGCTCTTCCTATTGGGGAA..............................	25	1	4.00	4	0	0	4	0	0
....................................................................................................................................................................................CAGCATGTGCTCTTCCTATTGGGGAAGA............................	28	1	3.00	3	0	2	1	0	0
............................CTAGCTGCATTGTTGGCA..............................................................................................................................................................................................	18	1	3.00	3	1	2	0	0	0
...................................................................................................................................................................................................................AATTAATGGCGAGAACGGC......	19	1	3.00	3	0	0	3	0	0
......................................................................................................................................................................................................................TAATGGCGAGAACGGCTGGT..	20	1	3.00	3	0	1	2	0	0
.......................................................................................................................................................................................CATGTGCTCTTCCTATTGGGGAA..............................	23	1	3.00	3	0	0	2	1	0
..........ATGAAAGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	26	1	3.00	3	1	1	0	1	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACG........	19	1	3.00	3	0	2	1	0	0
.............AAAGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAAC.........	18	1	3.00	3	0	3	0	0	0
.............................................................................................................................................................................................................AGAGCAAATTAATGGCGAGAAC.........	22	1	3.00	3	0	1	2	0	0
...................................................................................................................................................................................................CTATTGGGGAAGAGCAAATTAATGGCG..............	27	1	3.00	3	0	0	3	0	0
............GAAAGTATTCCTGGTTCTAGCT..........................................................................................................................................................................................................	22	1	2.00	2	0	1	1	0	0
..................ATTCCTGGTTCTAGCTGCATT.....................................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0
....................................................................................................................................................................................................TATTGGGGAAGAGCAAATTAATG.................	23	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................CATGTGCTCTTCCTATTGGGGAAGA............................	25	1	2.00	2	0	0	2	0	0
...................................................................................................................................................................................................CTATTGGGGAAGAGCAAATTAATGG................	25	1	2.00	2	0	0	2	0	0
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGGCTGG...	23	1	2.00	2	0	0	2	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGG.......	20	1	2.00	2	0	0	2	0	0
...............AGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	21	1	2.00	2	1	0	0	1	0
....................................................................................................................................................................................CAGCATGTGCTCTTCCTATTGGGGA...............................	25	1	2.00	2	0	1	1	0	0
..........................................................................................................................................................................................GTGCTCTTCCTATTGGGGAA..............................	20	1	2.00	2	0	0	2	0	0
...............................................................................................................................................................................................................AGCAAATTAATGGCGAGAACGGCTG....	25	1	2.00	2	0	0	2	0	0
........AAATGAAAGTATTCCTGGTTCTAGCTG.........................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0
...................................................................................................................................................................................................................AATTAATGGCGAGAACGGCT.....	20	1	2.00	2	0	0	2	0	0
....................................................................................................................................................................................CAGCATGTGCTCTTCCTATTGGGGAA..............................	26	1	2.00	2	0	1	1	0	0
..........................................................................................................................................................................................................................GGCGAGAACGGCTGGTTT	18	1	2.00	2	0	2	0	0	0
.......AAAATGAAAGTATTCCTGGT.................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0
.......................................................................................................................................................................................CATGTGCTCTTCCTATTGGGGAAG.............................	24	1	2.00	2	0	0	2	0	0
...................................................................................................................................................................................................................AATTAATGGCGAGAACGGCTGGTTT	25	1	2.00	2	0	2	0	0	0
..............................................................................................................................................................................................................GAGCAAATTAATGGCGAGAAC.........	21	1	2.00	2	0	2	0	0	0
.........AATGAAAGTATTCCTGGTTCTAGCT..........................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0
.....................................................................................................................................................................................AGCATGTGCTCTTCCTATTGGGGAAGAG...........................	28	1	2.00	2	0	1	1	0	0
..................................................................................................................................................................................................CCTATTGGGGAAGAGCAAATTAATGGCG..............	28	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................................................AATGGCGAGAACGGCTGGT..	19	1	2.00	2	0	0	2	0	0
..............................................................................................................................................................................................................GAGCAAATTAATGGCGAGAACGGCTGG...	27	1	2.00	2	0	0	2	0	0
...................................................................................................................................................................................................CTATTGGGGAAGAGCAAATTAAT..................	23	1	2.00	2	0	0	2	0	0
.................TATTCCTGGTTCTAGCTG.........................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
...................................................................................................................................................................................................CTATTGGGGAAGAGCAAAT......................	19	1	1.00	1	0	0	1	0	0
......CAAAATGAAAGTATTCCTGGTT................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.....................CCTGGTTCTAGCTGCATTGTTGGC...............................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
..................ATTCCTGGTTCTAGCTGCATTGTTGGCA..............................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.........................GTTCTAGCTGCATTGTTGGCAG.............................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................TTCCTATTGGGGAAGAGC..........................	18	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................CTATTGGGGAAGAGCAAATTAATG.................	24	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................AGCAAATTAATGGCGAGAACGG.......	22	1	1.00	1	0	1	0	0	0
.............AAAGTATTCCTGGTTCTAGCTG.........................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................AGCAAATTAATGGCGAGAACGGCTGGTTT	29	1	1.00	1	0	0	1	0	0
..............AAGTATTCCTGGTTCTAGC...........................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..............AAGTATTCCTGGTTCTAGCTG.........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.........................GTTCTAGCTGCATTGTTGGCA..............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.................TATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
.......AAAATGAAAGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................GCATGTGCTCTTCCTATTGGGGAAGAG...........................	27	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................CCTATTGGGGAAGAGCAAATTAATGGCGA.............	29	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................AGCATGTGCTCTTCCTATTGGGGA...............................	24	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................GTGCTCTTCCTATTGGGGAAGA............................	22	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................TATTGGGGAAGAGCAAATTAATGGCG..............	26	1	1.00	1	0	0	1	0	0
............................CTAGCTGCATTGTTGGCAGCA...........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGGCTGGTTT	28	1	1.00	1	0	0	1	0	0
......CAAAATGAAAGTATTCCTG...................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................AAATTAATGGCGAGAACGGCTGGG..	24	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................GAGCAAATTAATGGCGAGAACGGCTGGT..	28	1	1.00	1	0	0	1	0	0
.......................TGGTTCTAGCTGCATTGTTGGCAGC............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.........AATGAAAGTATTCCTGGTTCTAGCTG.........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................ATTCCTGGTTCTAGCTGCATTGTTGGC...............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...............AGTATTCCTGGTTCTAGC...........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
......CAAAATGAAAGTATTCCTGGTTC...............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.......AAAATGAAAGTATTCCTGGTTCTAGCT..........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.........................GTTCTAGCTGCATTGTTGGCAGC............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................AGAGCAAATTAATGGCGAGAACGGCTG....	27	1	1.00	1	0	1	0	0	0
.........AATGAAAGTATTCCTGGTT................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................GTGCTCTTCCTATTGGGGAAGAG...........................	23	1	1.00	1	0	1	0	0	0
...................TTCCTGGTTCTAGCTGCATTGTTGGC...............................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...........TGAAAGTATTCCTGGTTCTAGCTGC........................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................CTTCCTATTGGGGAAGAGC..........................	19	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................GCATGTGCTCTTCCTATTGGGGAA..............................	24	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................GGAAGAGCAAATTAATGGCGAGAAC.........	25	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGGCTGG...	24	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................AATGGCGAGAACGGCTGGTTT	21	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................AGCATGTGCTCTTCCTATTGGGGAAG.............................	26	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................AGCAAATTAATGGCGAGAACG........	21	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................TTCCTATTGGGGAAGAGCAAATTAATGGC...............	29	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................ATTAATGGCGAGAACGGCTGGT..	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................AGCAAATTAATGGCGAGA...........	18	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................TTAATGGCGAGAACGGCTGGT..	21	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................ATGTGCTCTTCCTATTGGGGAAGAGCAA........................	28	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................ATGGCGAGAACGGCTGGTT.	19	1	1.00	1	0	0	1	0	0
................GTATTCCTGGTTCTAGCTG.........................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................AAGAGCAAATTAATGGCGA.............	19	1	1.00	1	0	1	0	0	0
...........................TCTAGCTGCATTGTTGGCA..............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..........ATGAAAGTATTCCTGGTTC...............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................GAGCAAATTAATGGCGAGAACG........	22	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGGCTGG...	25	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGGCTGGTTT	27	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................AGCAAATTAATGGCGAGAAC.........	20	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................ATGTGCTCTTCCTATTGGGGA...............................	21	1	1.00	1	0	1	0	0	0
............................CTAGCTGCATTGTTGGCAG.............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................AATTAATGGCGAGAACGGCTG....	21	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................TATTGGGGAAGAGCAAATT.....................	19	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................ATGTGCTCTTCCTATTGGGGAAGAGC..........................	26	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................CTATTGGGGAAGAGCAAATTAATGGCGAG............	29	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................GCAAATTAATGGCGAGAACGGCTT....	24	1	1.00	1	1	0	0	0	0
......................CTGGTTCTAGCTGCATTGTTGGCAGCA...........................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
.....................CCTGGTTCTAGCTGCATTGTTGGCA..............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................CCTATTGGGGAAGAGCAAATTAATG.................	25	1	1.00	1	0	0	1	0	0
.........AATGAAAGTATTCCTGGTTCTA.............................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................AGCAAATTAATGGCGAGAACGGCT.....	24	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGGCTGC...	24	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................AAGAGCAAATTAATGGCGAGAACGGC......	26	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................TGTGCTCTTCCTATTGGGGAAGAGC..........................	25	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................CAAATTAATGGCGAGAACGGCTGGT..	25	1	1.00	1	0	0	1	0	0
............GAAAGTATTCCTGGTTCTAGC...........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................ATGTGCTCTTCCTATTGGGGAAG.............................	23	1	1.00	1	0	0	1	0	0

droVir3

AGATCACAGAATGAAAGTATTCCTTGTTCTAGCAGCAGTGTTGTCCGCTGGTAAGTCCCAAC-------TTTATCCTAA--------------T--AA-CTGA-ATGG-------------A-----ATT-----------------------C--C---TTACGTAGTTGGCCT---TTCAGTCAGTGCCCTGCCCATTCAG---GAGCGCATTCATGGCGAGAATGGCTGGTAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................CAGTGCCCTGCCCATTCAG---GAGC..........................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CAG---GAGCGCATTCATGGCGAGAATGGCTG....	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGAATGAAAGTATTCCTTGTT................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GTATTCCTTGTTCTAGCA..........................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................TTCAG---GAGCGCATTCATC.................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATTCATGGCGAGAATGGCTG....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........AATGAAAGTATTCCTTGTTCTAGCAGC........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AAAGTATTCCTTGTTCTAGCAGC........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................ATTCATGGCGAGAATGGCTGGT..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............GAAAGTATTCCTTGTTCTAGCAG.........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TATTCCTTGTTCTAGCAGCA.......................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........ATGAAAGTATTCCTTGTTCTAGCAGC........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................AG---GAGCGCATTCATGGCGA.............	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

AGTTACCGGAATGAAAGTATTTCTCGTACTAGCAGCACTCCTTGCAACAGGTCAGAAACAAT-------TTTTTTCCCGTTAGATGAAATTTTG----------TAGGT-------------------CCCTAA----C-----------------------AC------TCTTT---TTCAGTCAGCGCCCTGCCCATTCAG---GAGCGTATTCATGGCGAGAATGGTTGGTAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................CCCGTTAGATGAAATTTTG----------T...................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................GTATTTCTCGTACTAGCAGCACTCCTTG................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GTATTCATGGCGAGAATG........	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GTATTCATGGCGAGAATGGT......	20	1	1.00	1	0	0	0	0	0	1

droGri2

ATATCACAGAATGAAAGTATTGTGTGTTCTAGCAGCTCTGGTGGTCGCAGGTAAGCGCTATA------G-------TTC-G---ATTCC-TCCA--AT-----C-----GAATA------CA-----ATTTCTA----T-------CGATT-AA--T---CTT-------GGTCT---TTCAGTAAGTGCACTGCCTATCGAG---GAGCGTATTCATGGCGAGAATGGCTGGTAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_16716

3r:22294973-22295032 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads