ID:

dsi_16698

 Coordinate:

3r:17406246-17406395 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_17405918_17406245_+]; exon [3r_17405761_17406245_+]; intron [3r_17406246_17425600_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCCGCCTTCCCCAACGTCTTCACCCACGTCGAACGCCTGCTGGACGAAGGTAAGTCGCTAAAACGCAAACCGAGTAAGATCCCTCCAAGTCACAGGATCATCCTAATCGCGGATCCAAGACTCAGCGGGAGTATAAAAATCACTAGCTACCTTTTTATGAATCAAACAGTCTTATCGAAGTGCATAAAAAGTTTGTTATTGTGACAATATCCTGTATCATTCGGAATTTGTTATATATTAAATCTGATA
**************************************************((((...(((.....(((...(((.(((((((((....((((...(((((............)))))..))))....)))).((((((((............))))))))..........))))))))...)))......)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
..............................CGAACGCCTGCTGGACGAAG........................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0
.....................CACCCACGTCGAACGCCTGCT................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................CATCCTGATCGCGGAT....................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................ATCCTACTCGGGGATCCA.................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................ATCATGTATCATACGGAA....................... 18 2 3 0.33 1 1 0 0 0 0 0 0
.........................................TGGACGAAGGGAAGTC................................................................................................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0
.....................................CTGCTGGAGGATGGTACGTC................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................ATTTGTGATATATTAACTC..... 19 2 4 0.25 1 0 0 0 1 0 0 0
..............................................................................................................................................AGTAGCTACCTTTTAATGAA........................................................................................ 20 2 5 0.20 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................CGGAGTTTGTTATAT............. 15 1 6 0.17 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TTCGGAATTATTTATATATTATAT...... 24 3 6 0.17 1 0 0 0 0 0 1 0
....................................................................................................ATCCTACTCGGGGAGCCA.................................................................................................................................... 18 3 16 0.13 2 0 1 0 0 0 0 1
....................................................................................................ATCCTGATCGCGGAT....................................................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0
.....................................................................................................TCCTACTTGCGGATCCA.................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 1
.........................................................................AGTAAGATCCCTCGAAGAT.............................................................................................................................................................. 19 3 13 0.08 1 1 0 0 0 0 0 0
...........TCAACGTCGTCACGCACGT............................................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 0 1 0 0 0
...................................................................................................CATCCTGATCGCGGATA...................................................................................................................................... 17 2 13 0.08 1 0 1 0 0 0 0 0
..........................................................................................TCACAGGTTCATCCTG................................................................................................................................................ 16 2 20 0.05 1 1 0 0 0 0 0 0
..........................................................................GTAAGATCGCACCAAGGC.............................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0
............................................................................................................CGCGGATTCAAGAGGCAGC........................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................................GAGTTTGTTATATAT........... 15 1 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CCGGCGGAAGGGGTTGCAGAAGTGGGTGCAGCTTGCGGACGACCTGCTTCCATTCAGCGATTTTGCGTTTGGCTCATTCTAGGGAGGTTCAGTGTCCTAGTAGGATTAGCGCCTAGGTTCTGAGTCGCCCTCATATTTTTAGTGATCGATGGAAAAATACTTAGTTTGTCAGAATAGCTTCACGTATTTTTCAAACAATAACACTGTTATAGGACATAGTAAGCCTTAAACAATATATAATTTAGACTAT
**************************************************((((...(((.....(((...(((.(((((((((....((((...(((((............)))))..))))....)))).((((((((............))))))))..........))))))))...)))......)))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR1275487
Male larvae		 M023
head
 SRR553488
RT_0-2 hours eggs
........................................................................................TCAGTGTACTAGTAGGAGTCGC............................................................................................................................................ 22 3 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................AGTGTCATAGTAGGA................................................................................................................................................. 15 1 5 0.20 1 0 0 1 0 0 0 0 0
......GAAGGGGTTGCTGAAGTC.................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0 0
....................................................................................................................GTTCGGAGTCGCCAACATA................................................................................................................... 19 3 5 0.20 1 0 1 0 0 0 0 0 0
...............................................................................................................................................GATCGAAGGAAAAAT............................................................................................ 15 1 17 0.12 2 0 2 0 0 0 0 0 0
..............................................................................................................................................TGATCGAAGGAAAAATTC.......................................................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0
....................ATTGGGTGCAGGTTGCCGA................................................................................................................................................................................................................... 19 3 18 0.11 2 0 0 0 0 0 2 0 0
.........GGGGTTGCAGATGTGAGTA.............................................................................................................................................................................................................................. 19 3 10 0.10 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................GGACACCGTAAGCCTCAAA.................... 19 3 20 0.10 2 0 0 0 0 1 0 1 0
..........................................................................................AGTGTCATATTAGGACTAG............................................................................................................................................. 19 3 16 0.06 1 0 0 1 0 0 0 0 0
.....................................GACGACCTGCTTCAA...................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1
................................................TCCCGTCAGCGATTTT.......................................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 07:46 PM