ID:

dsi_16690

 Coordinate:

2r:1577870-1578019 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
AT_richLow_complexityLow_complexity+
mature
  1. dsi_16690  2r:1577957-1577981 -
  2. dsi_19339  2r:1627129-1627153 -
star
  1. dsi_16690  2r:1577905-1577929 -
  2. dsi_19339  2r:1627077-1627101 -

Sense Strand Reads

GATTTATCTAACGGAATCTGAAATGTTTATGCACAATAAGGAAAAAGAATGTTAGTATATTCAAATTTTTTTATTTAATTTATCCGCTGACACATGACTTGGACTTATTGAACAATAAGTAAGTCCAATAAATATTATATATAAACTTAAACTTTATTACCGTTACTCGTAGAGTACAATGGTGATCCGTTTAAAAGGATTAACAGGAAGAAAAGAGCTTTTGCCTATAAAGCATATATATGCGTGATCA
****************************************************************************************..........(((((((((((........))))))))))).....................................************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR1275483
Male prepupae		 SRR1275487
Male larvae
...........................TATGCACAATAAGGAAAAAGAATGGGA.................................................................................................................................................................................................... 27 2 2 4.00 8 6 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................CTTGGATTTATTGAAGACTA..................................................................................................................................... 20 3 12 3.42 41 0 0 21 16 0 1 2 0 0 0 0 1
..TTTATCTAACGGAATCTGAAAT.................................................................................................................................................................................................................................. 22 0 2 2.50 5 0 0 2 0 0 3 0 0 0 0 0 0
...TTATCTAACGGAATCTGAAATGTT............................................................................................................................................................................................................................... 24 0 2 2.00 4 2 0 0 0 1 0 1 0 0 0 0 0
.........................TTTATGCACAATAAGGAAAAAGAATGGGA.................................................................................................................................................................................................... 29 2 2 2.00 4 3 1 0 0 0 0 0 0 0 0 0 0
...TTATCTAACGGAATCTGAAAT.................................................................................................................................................................................................................................. 21 0 2 1.50 3 1 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTATTACCGTTGCTGGTCGAG............................................................................ 21 3 11 1.45 16 0 0 0 0 11 0 2 3 0 0 0 0
.................................................................................................CTTGGATTTATTGAAGACTAA.................................................................................................................................... 21 3 8 1.38 11 0 0 4 6 0 0 0 0 0 0 1 0
........TAACGGAATCTGAAATGTTTATGCACAA...................................................................................................................................................................................................................... 28 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....TATCTAACGGAATCTGAAATGTTTA............................................................................................................................................................................................................................. 25 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..........................TTATGCACAATAAGGAAAAAGAATGGGA.................................................................................................................................................................................................... 28 2 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..TTTATCTAACGGAATCTGAAATGTT............................................................................................................................................................................................................................... 25 0 2 1.00 2 0 1 0 0 1 0 0 0 0 0 0 0
.ATTTATCTAACGGAATCTGAAATGTT............................................................................................................................................................................................................................... 26 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.......CTAACGGAATCTGAAATGTTTATGCA......................................................................................................................................................................................................................... 26 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTACCGTTACTCGTTGAACAC......................................................................... 21 3 4 0.75 3 0 3 0 0 0 0 0 0 0 0 0 0
........................................................................................GACACATGACTTGGACTTATTGAAC......................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................CTTGGACTTATTGAACAATAA.................................................................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
.ATTTATCTAACGGAATCTGAAAT.................................................................................................................................................................................................................................. 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....AATCTAACGGAATCTGAAATGTTTA............................................................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TGACTTGGACTTATTGAACAATAAGTA................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TTTAATTTATCCGCTGACACATGACT....................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATAAACTTAAACTTTATTACCGTTA..................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TTAACAGGAAGAAAAGAGCTTTTGCC......................... 26 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................ATCCGCTGACACATGACTTGGACTT................................................................................................................................................ 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................CACATGACTTGGACTTATTGAACAATA..................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TATTTAATTTATCCGCTGACACATGACT....................................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
........TAACGGAATCTGAAATGTTTATGCACA....................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTATTACCGTTACTCGTAGAGTACAA....................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGAACAGGAAGAAAAGAGCTTTTGCC......................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
......TCTAACGGAATCTGAAATGT................................................................................................................................................................................................................................ 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................CGCTGACACATGACTTGGACT................................................................................................................................................. 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
........TAACGGAATCTGAAATGTTTATGCACAATA.................................................................................................................................................................................................................... 30 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CACATGACTTGGACTTATTGAACAAT...................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................CATGACTTGGACTTATTGAACAATAAG................................................................................................................................... 27 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................TGACTTGGACTTATTGAACAATAAGG.................................................................................................................................. 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GACACATGACTTGGACTTATTGAACA........................................................................................................................................ 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................TTTAATTTATCCGCTGACACATGACTTG..................................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................TTAAAAGGATTAACAGGAAGA....................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................TTTTATTTAATTTATCCGCTGACACATGA......................................................................................................................................................... 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CTTGGATTTATTGAACACT...................................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................TTATGTACAACAAGGAAAAAAA.......................................................................................................................................................................................................... 22 3 11 0.18 2 0 0 0 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................TTATTACCGTTGCTGGT................................................................................ 17 2 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0
..................................................................................................TTGGACTTATTGAAGACTAA.................................................................................................................................... 20 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................ATAAGGAAAAAGAATGGGA.................................................................................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................TAAGGAAAAAGAATGG...................................................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................TATTACCGTTGCTGGTCGAG............................................................................ 20 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................ATTTATCCGCTCACA.............................................................................................................................................................. 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................TTACCGTTACTCGTTGAACA.......................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTCCGTTGAAAAGGATT................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................TGGAAAGAGAATGTTAGTC................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTAAATAGATTGCCTTAGACTTTACAAATACGTGTTATTCCTTTTTCTTACAATCATATAAGTTTAAAAAAATAAATTAAATAGGCGACTGTGTACTGAACCTGAATAACTTGTTATTCATTCAGGTTATTTATAATATATATTTGAATTTGAAATAATGGCAATGAGCATCTCATGTTACCACTAGGCAAATTTTCCTAATTGTCCTTCTTTTCTCGAAAACGGATATTTCGTATATATACGCACTAGT
*************************************************************************************..........(((((((((((........))))))))))).....................................**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 SRR553488
RT_0-2 hours eggs
 M025
embryo
............................................................................................................................................................AATGGCAATGAGCAACTTGTG......................................................................... 21 3 4 8.50 34 34 0 0 0 0 0 0
....................................................................................................................................................................................................................CTCTCGAAAACGGATGTTTGGT................ 22 3 2 2.50 5 0 5 0 0 0 0 0
............................................................................................................................................................AATGGCAATGAGCAACT............................................................................. 17 1 4 1.25 5 5 0 0 0 0 0 0
............................................................................................................................................................AATGGCAATGAGCAACTTGT.......................................................................... 20 3 17 0.71 12 12 0 0 0 0 0 0
....................................................................................................................................ATAATACCTAGTTGAATTTGAAAT.............................................................................................. 24 3 3 0.67 2 0 2 0 0 0 0 0
......................................................................................................................................................................AGCATCTCATGTTAACGCT................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0
............................................................................................................................................................AATGGCAATGAGCAACTT............................................................................ 18 2 18 0.50 9 9 0 0 0 0 0 0
..................................................................................................................................................................................................................TTCTCTCGAAAACGGATGTTTG.................. 22 3 2 0.50 1 0 1 0 0 0 0 0
.......GATTGCCTTAGACTTTACAAATACG.......................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTCGAAAACGGATGTTTGGT................ 21 2 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................................................................................................TCTCATGTTACCACTAGGCAA........................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................TCTCGAAAACGGATGTTTGGTAA.............. 23 3 3 0.33 1 0 1 0 0 0 0 0
............................................................................................................................................................AATGGCAATGAGCAAC.............................................................................. 16 1 9 0.33 3 3 0 0 0 0 0 0
..........................................................................................................................................................GTGATGGCAATGAGCATCTCA........................................................................... 21 2 6 0.17 1 0 0 0 1 0 0 0
.........................................................................................................................................................ACTAATGGCAATGGGCA................................................................................ 17 2 8 0.13 1 0 0 0 0 1 0 0
......................................................................................................................................................................AGCATCTCATGTTAA..................................................................... 15 1 15 0.07 1 0 0 0 0 0 1 0
......................................................................................................................................................................AGCATCTCATGTTAACG................................................................... 17 2 17 0.06 1 0 1 0 0 0 0 0
.............................................................................................................................................................................CAGGTTACCATCAGGCAAA.......................................................... 19 3 18 0.06 1 0 0 0 0 0 0 1
............................................................................................................................................................AATGGCAATGAGCAA............................................................................... 15 1 18 0.06 1 1 0 0 0 0 0 0
...........................................................................................................................................................TAAAGGCAATGAGCATCT............................................................................. 18 1 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:1577820-1578069 - dsi_16690 GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAAATTTTTTT----------------------ATT-----TAATTTATCCGCTGACACATGACTTG--GACTTATT-GAACAATAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCCAATAAATAT-------------------------TATATATAAA-C----------T-----T-------AAACT---TTATTACCGTTACTCGTAG------AG--TACAATGGT------GATCCGTTTA-------AAAGGAT-TAACAGGAAGAAAAGAGCTTTT----------GCCTATAAAGCATATATATGCGTGATCA
droSec2 scaffold_60:76324-76573 + GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAAATTTTTTT----------------------ATT-----TAATTTATCCGCTAACACATGACTTG--GACTTATT-GAACAATAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCCAATAAATAT-------------------------TATATACAAA-C----------T-----T-------AAACT---TTATTACCGTAAGTCGTAG------AT--TACAATGGT------GATCCGTTTA-------AAAAGAT-TAACAAGAAGAAAAGAGCTTTT----------GCCTATAAAGCATATATATGCGTGATCA
dm3 chr2R:582425-582673 - GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAATTTTTTTT----------------------ATT-----TAATTTATCCGCTGACACATGACTTG--GACTTATT-AAACAATAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCCAATAAATCT-------------------------AATATAAAAA-C----------T-----T-------AAATT---TTATTACCGTTACTCGTAG------AG--TACAAGGGT------GATCCGTTTA-------AAAGGATGTAACAGGAAGAAAAGAGCTTCT----------CCCTAAAAAGTATATATACTTGTGAT--
droEre2 scaffold_4845:473562-473814 + GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----GTG---TTAGTATATCCAG-TTTATTA----------------------ATT-----TAATTTATTGGCTGACACATGACTAG--GACTTTTT-GATTT-----T---------------------------------------------------------------------------------------------------------------------------------------------------------ACGTCTCATATA-----------------------GTTATCCTAAATAAA-C----------T-----G-------AAAAA---TTATACCCTTTACTTGTAG------AG--TACAAGGAAATACTAGAATCATTAA-------A----ATGTAACAAAAAGAA--AAGTGTTTCCGAGCATTTCTCTAAGAAAAATATATATTT----TCA
droYak3 v2_chr2h_random_004:1141338-1141582 + GATTTATCTA-----ACAGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAA-TTTATTT----------------------ATT-----TATTTTATTCTCTGACACATGACTAT--GAATTATC-GAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACGGGTAATATGGTTAGTCTAAGTAAA-C--------------------------------T--TATCCCATACTCATAA------AG--TACGAGGGCATACTAAAATCGTTCA-------ATAGTATGTAACAGGAAGAAGATAGCGTTT----------CCTTAGAAAGTATATATATTATTGATCA
droEug1 scf7180000409667:43043-43306 - GAGTCATATA-----ACTGAA----ACCA----GTTTTCGTA----CGGA--------------------------------ATGGAG---T--GG-----ATG---TTGTCGTTTATAATTTTTTTT----------------------A-----------------------------------AATT-----GTAGTGTA------------------------------------------------------------------------TTTAAATGCGCGTCAACCTTTAATTCAATT-------------------------A------TTCACATTATA--------ACAAAGCCT-ATGAACATTTGTTTC------------------------TAAA-A----------T-------------TATAT---TTATACCCGTTACTCATAG------AG--TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGTAGAACGAAACGTTTCCG------ACCCTATAAAGTATATATATTCTTGATCA
droBia1 scf7180000301890:15902-16140 - CATTTATTTC-----AGGG---------GAATTGTTCATCAA----CAAC--------------------------------AAGAAG-AACAACTAAAAGAAG---TTGGGATGTGCAAATAATTGT----------GTGTTGTGA---AAA-----TAAT-------------TTTGACTAG--GATT-----GTATAATATTT---------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TTTG------------------------TACA-----------AA-----T------ATATTA---TTATATCCGTTACTCGTAG------AG--TAAA-AGGTATACTAGATTCGTCGG-------AAAGTATATAATGCGTAGAAGGAAACGTTCGCG------ACCCTACAAAGTACATATATTCTTGATCA
droTak1 scf7180000415352:564828-565096 + GAATTATTTA-----A----A----CCTGATATATT-AAGAA----CAG---------------------------------AAGAAA-ACA--GA-----TTGAACTTAAAATATTTAAATTTCTTT------------------------------------------------------TA--AATTTGTT-TAACTAAAAAA---------ATGTCGAATT---------------AAAAGAAATATAATTGAAATATTAATTTAATTGAATTTGAA-------------------------------------------------A------ATCAAAT------------------------------------------------------------------------------TTTTTG------ATATTA---TTATACCCGTTACTCGTAG------AG--TAAAAGGGTATACTAGATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCG------ACCCCATAAAGTATATATATTCTTGATCA
droEle1 scf7180000491107:197364-197606 + AGTATATTTA-----AGTATAT---TTAAGTATATTTAAGTA----TATT--------------------------------TAAGTA-T-----------ATT---TAAGTATATTTAAGTATATTT----------------------AA---------GTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAGTATATTT---AAGTAT-------------ATTTAAGTATATTAAAGTATATTTAAGTATA-TTTAGTATAT-T-----G----AGTTATAT---TTATACCC-TTGC----AG--------------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACATCTCCG------ACCCTATAAAGTATATATATTCTTGATCA
droRho1 scf7180000769565:74015-74259 - GTTTTATCAGACAAAACGGAT----TCCATAATGTTT------------T--------------------------------AACTAA-AAA--GT-----TAT---TTCTTATATTTT--------AAATATTA------------ATATTT-----TTATTTATTTACTCT-----------------TA-----GGTTTCA---------------------------------------------------------------------------------------------AT-------------GC---------------------------------------------AATTTCAAGATACAT-------------------------CTAACATAAG-G---------AA-----T------ATATTT---TTATACCCGTTACTCGTAG------AG--TAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTACA------ACCCTATAAAGTATATATATTCTTGATCA
droFic1 scf7180000453962:11374-11502 + AATTAATATA-----AATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------AA-----T------TAGTTT---TTATACCC-TT----GCAG------AG--CAA-AGGGTATTATAATTTCATTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAG------ACCCCATAAAGTGTATATATTCTTGATCA
droKik1 scf7180000302683:255416-255647 + TATTTATATA-----AATG-------CTGAAAAAAATAT--A----AAGT-AA---TATA----T-ATA--------T-------ATA-T-----------AAA---TTAATACGATTAAATTTTT-T----------------------TTT-----TAATTTTATCAAAGACAAAT------------TATT-ATATGATATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATA-CACATTTTAT-A-----T----TTCTTTTT---TTATACCC-TTGC----A----------------AAGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACCTTTCCG------ACCCTATAAAGTATATATATTCTTGATCA
droAna3 scaffold_13082:1429260-1429510 - TAC-------------CGTAA----TTTTTGGTTTTAATGTA----TAAT--------------------------------ACTGTA-CAG--TA-----AA-----AAGTGGACTCAATGTTTTTG----------------------AGT-----ACAATTATCTGTT-GTACATTACTGT--GGTGCTGG-GAATGA-ATTT--------------TTTCA--------------------------------------------------TGCAG-------------------------------------------------------------------------------ATGTCTAATTAATTC-------------------------TATTAATAAAAC---------AA-----T------AATTTG---TTATACCC-TTGC----AG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCG------ACCCTATAAAGTATATATATTCTTGATCA
droBip1 scf7180000396518:132986-133238 + GATTTTTATG-----ACAAAA----ATTAAAATAT------------AACT---CTTATTTTCA-ATTTTTATGATAATATTAAAGAA-TAA--GA-----ATTA--TT-----TTTCAA-TTT-----------------------------------------------------------------TTATA-AAAAAATAAATAAAAATTATAATTCAATTTTTTTAAAAATATTGC---------------------------------------------AA------ATAAGTGTTACG-------------------------------------------------------------------------------------------------------A-T----------------T------CAATTT---TTATACCC-TTGC----AG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCG------ACCCTATAAAGTATATATATTCTTGATCA
dp5 Unknown_group_292:3309-3530 - GAGAT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------TCTTGTTTTTT--------TATTTTTT------------ATTTTT-----T------------------------------TTTTT-AAAGAATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATATGTATA------T------AT---TAT------A-TTAAATGTAT-T-----T----ATTTATTA---TTATACCCGATACTCAAAA----TGAG--TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCG------ACCCCATAAAGTATATATATTCTTGATCA
droPer2 scaffold_85:165933-166183 - GAATAATTTA-----AAAAAAAATAATAGCACTATTTATCA------------------------AAGT--------AGATTAAGGAA-AAC--AA-----TTGAATTGAAATAATTCAAATTTCCGT----------------------TTT-----TAAAAAATGC---GACACTTGAATAC--GAT---------------------------------------------------------------------------------------------------------------------------------------------A------TTCACATTGAA------------------------------------------------------------A-----------AA-----T------ATTATA---TTATACCCGATACTCAAAA----TGAG--TATATGAGAAAATTTGATTTGTGGTGAAAATATATGTGTGTAACGTCCAGAAGGAATCGTTTCCG------ACCCTATAAAGTATATATCTTCTTGATCA
droWil2 scf2_1100000004963:1900537-1900835 + CATTTGTCCA---TAACGCAT----TTTGAAATATTAAGAAA----TATT--------------A-AGT--------C-------GAA-TAA--GTA----ATG---CGAGTTATTTTAAATG---------GAATGGGCTTTTG--CCCTTT-----TGACTT--TTGCTCTTGTAAAACTCG--GTTTTATAAAAACTATAAGAAACGATAATATTTCGTTTT--------------------------------------------------GACTG-------------AC--AT-------------CC-------AATTA----GAGCAAATT-----------------------------------------------------------------------------------TCAATG------ACATTT---TTATACCGTACAACCATAG------GT--TAAAATGGTATATTAATGTCGTCAA-------AATGTATGTAACAGGTAGAAGGAAGCTTTTCCG------ACCCTGTAAAGTATATTTATTCTTGATCA
droVir3 scaffold_13047:13717426-13717666 - AT-ATATTTA-----TGGGAG----TATGAGCTATTAACT-----------AGA--TATT----------------------TATGAATGAA--TA-----TTT---TTAGCCAATTCAGATTTGCTA----------------------GTA-----TACTTTATAT-TAAATTCAACACTTGTCAACTTAAT-AAACTTTGAGT----------------------------------------------------------------------------------------------------------AC---------------------------------------------AGAAGCAAAAATCTT-------------------------GATAAATAAT-T---------GT-----T-------AGATT---TTA---------------------------------ATACTCTAATTTTGTCGT-------AAAGCGTGTAACGCATAGAAGGAGACATTTCCA------AACCGATAAAGTATATAGATTCTTGATCA
droMoj3 scaffold_6500:14285196-14285452 + AT-TTATTTA-----ATAT----------AAATGTTTATTTA----TAACTAGAC-TATT----------------------T-------TT--AA-----ATA---TTATTATTTATTAATTTATTT----------------------ATT-----TAATTTAA-------------------------------------------------------------------------------------------------------------TTTAAATGTCTG------ATTAATTTAACTATTCAGTGCCGAAATATATTACAGAA------TT-----------------------------------------------------------------------------------TTCTTG------GTAAAT---TTATACCCTGAACCCATTGAAAATGGG-AAATCAGGGTATAATGGTTTTGTT-A-------AAAGTATGTAACAGGTAGAAGGAGGCGAGGCAG------ACCCCATAAAGTATATATATTCTTGATCA
droGri2 scaffold_14824:7930-8178 - TAA---------------------------AATAAAAATATG----CAAT--------------------------------TAAGAA-TAC--TA-----ATG---TCAATATTTATTTATTTGGTT----------------------TTTTAATATT-------------------------------ATA-AAATAATTAGCACAAAAAATGAGCCGGTAGTAATTAGTATAATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAAT-T---------GT-----TAGATT-TGACTCTAATTACTTCCAATACACAG-T----TGATCATTAAAGGGTATAATGGTTTTATGCA-------AATGTATGTAACAGGCAGAAAGAAGCATCTCCG------TCCCCATAAAGTATATATATTATTGATCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAAATTTTTTT----------------------ATT-----TAATTTATCCGCTGACACATGACTTG--GACTTATT-GAACAATAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCCAATAAATAT-------------------------TATATATAAA-C----------T-----T-------AAACT---TTATTACCGTTACTCGTAG------AG--TACAATGGT------GATCCGTTTA-------AAAGGAT-TAACAGGAAGAAAAGAGCTTTT----------GCCTATAAAGCATATATATGCGTGATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..TTTATCTA-----ACGGAA----TCTGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2222.50502300000000000000
...TTATCTA-----ACGGAA----TCTGAAATGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.00400010020001000000
...TTATCTA-----ACGGAA----TCTGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.50301000011000000000
........TA-----ACGGAA----TCTGAAATGTTTATGCA----CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2821.00200000020000000000
....TATCTA-----ACGGAA----TCTGAAATGTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.00200000011000000000
..TTTATCTA-----ACGGAA----TCTGAAATGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.00200000001001000000
.ATTTATCTA-----ACGGAA----TCTGAAATGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.00200000011000000000
.......CTA-----ACGGAA----TCTGAAATGTTTATGCA----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.00200000020000000000
...........................................................................................................................................................................GACACATGACTTG--GACTTATT-GAAC.....................................................................................................................................................................................................................................................................................................................................................................................2520.50100010000000000000
....................................................................................................................................................................................CTTG--GACTTATT-GAACAATAA................................................................................................................................................................................................................................................................................................................................................................................2120.50110000000000000000
.ATTTATCTA-----ACGGAA----TCTGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.50101000000000000000
.................................................................................................................................................................................TGACTTG--GACTTATT-GAACAATAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------A....................................................................................................................................................................................................................2720.50100000010000000000
.......................................................................................................................................................TT-----TAATTTATCCGCTGACACATGACT......................................................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA-C----------T-----T-------AAACT---TTATTACCGTTA.....................................................................................................................2520.50100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TAACAGGAAGAAAAGAGCTTTT----------GCC.........................2620.50100000000001000000
....................................................................................................................................................................ATCCGCTGACACATGACTTG--GACTT.............................................................................................................................................................................................................................................................................................................................................................................................2520.50101000000000000000
.............................................................................................................................................................................CACATGACTTG--GACTTATT-GAACAATA.................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000000000
...............................................................................................................................T----------------------ATT-----TAATTTATCCGCTGACACATGACT......................................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000010000000
........TA-----ACGGAA----TCTGAAATGTTTATGCA----CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................T---TTATTACCGTTACTCGTAG------AG--TACAA...............................................................................................2720.50100000010000000000
......TCTA-----ACGGAA----TCTGAAATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000001000000000
.......................................................................................................................................................................CGCTGACACATGACTTG--GACT..............................................................................................................................................................................................................................................................................................................................................................................................2120.50110000000000000000
........TA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3020.50100000010000000000
.............................................................................................................................................................................CACATGACTTG--GACTTATT-GAACAAT..................................................................................................................................................................................................................................................................................................................................................................................2620.50100000001000000000
...............................................................................................................................................................................CATGACTTG--GACTTATT-GAACAATAAG...............................................................................................................................................................................................................................................................................................................................................................................2720.50100000000100000000
.................................................................................................................................................................................TGACTTG--GACTTATT-GAACAATAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................2620.50100000010000000000
...........................................................................................................................................................................GACACATGACTTG--GACTTATT-GAACA....................................................................................................................................................................................................................................................................................................................................................................................2620.50101000000000000000
.......................................................................................................................................................TT-----TAATTTATCCGCTGACACATGACTTG--..................................................................................................................................................................................................................................................................................................................................................................................................2820.50100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-------AAAGGAT-TAACAGGAAGA.................................................2120.50100001000000000000
............................................................................................................................TTTT----------------------ATT-----TAATTTATCCGCTGACACATGA........................................................................................................................................................................................................................................................................................................................................................................................................2920.50100000010000000000
.................................................T--------------------------------AAGGAA-AAA--GA-----ATG---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1690.11100000000001000000
droSec2
GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAAATTTTTTT----------------------ATT-----TAATTTATCCGCTAACACATGACTTG--GACTTATT-GAACAATAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCCAATAAATAT-------------------------TATATACAAA-C----------T-----T-------AAACT---TTATTACCGTAAGTCGTAG------AT--TACAATGGT------GATCCGTTTA-------AAAAGAT-TAACAAGAAGAAAAGAGCTTTT----------GCCTATAAAGCATATATATGCGTGATCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................CTGAAATGTTTATGCA----CAAT--------------------------------AAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
dm3
GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAATTTTTTTT----------------------ATT-----TAATTTATCCGCTGACACATGACTTG--GACTTATT-AAACAATAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------AAGTCCAATAAATCT-------------------------AATATAAAAA-C----------T-----T-------AAATT---TTATTACCGTTACTCGTAG------AG--TACAAGGGT------GATCCGTTTA-------AAAGGATGTAACAGGAAGAAAAGAGCTTCT----------CCCTAAAAAGTATATATACTTGTGAT--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-------AAAGGATGTAACAGGAAGAAAAGG............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT---TTATTACCGTTACTCGTAG------AG--TA..................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......CTA-----ACGGAA----TCTGAAATGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................ATAAATCT-------------------------AATATAAAAA-C----------T-----.................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GCTGACACATGACTTG--GACTT.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TTTATCTA-----ACGGAA----TCTGAAATGTTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CACATGACTTG--GACTTATT-AAACAAT..................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AATGTTTATGCA----CAAT--------------------------------AAGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAG------AG--TACAAGGGT------GATCC................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................AT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGTTACTCGTAG------AG--TACAAGGGT------G....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGGGT------GATCCGTTTA-------AAAGGAT.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGAAGAAAAGAGCTTCT----------C...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TTTT----------------------ATT-----TAATTTATCC....................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGAAATGTTTATGCA----CAAT--------------------------------AAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................TGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGTAG------AG--TACAAGGGT------GATC.................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....TATCTA-----ACGGAA----TCTGAAATGTTTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGT------GATCCGTTTA-------AAAGGA..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................AATGTTTATGCA----CAAT--------------------------------AAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAGTCCAATAAATCT-------------------------AATATA.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TATGCA----CAAT--------------------------------AAGGAA-AAA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................ACTTG--GACTTATT-AAACAATAAGG---------------------------------------------------------------------------------------------------------------------------------------------------------G....................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TGACACATGACTTG--GACTTATT-AAAC.....................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........A-----ACGGAA----TCTGAAATGTTTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCTA-----ACGGAA----TCTGAAATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GATTTATCTA-----ACGGAA----TCTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................TTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.ATTTATCTA-----ACGGAA----TCTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
GATTTATCTA-----ACGGAA----TCTGAAATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................TGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTA-----ACGGAA----TCTGAAATGTTTATGCA----C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.ATTTATCTA-----ACGGAA----TCTGAAATGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........TA-----ACGGAA----TCTGAAATGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTA-----ACGGAA----TCTGAAATGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGGT------GATCCGTTTA-------AAAG................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....TATCTA-----ACGGAA----TCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACCGTTACTCGTAG------AG--....................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCGTTACTCGTAG------AG--TA..................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGTAG------AG--TACAAGGGT------.....................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTACCGTTACTCGTAG------AG--T...................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCGTTACTCGTAG------AG--TA..................................................................................................2050.2010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TTCAATTTTTTTT----------------------ATT-----T.............................................................................................................................................................................................................................................................................................................................................................................................................................1780.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GATTTATCTA-----ACGGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----GTG---TTAGTATATCCAG-TTTATTA----------------------ATT-----TAATTTATTGGCTGACACATGACTAG--GACTTTTT-GATTT-----T---------------------------------------------------------------------------------------------------------------------------------------------------------ACGTCTCATATA-----------------------GTTATCCTAAATAAA-C----------T-----G-------AAAAA---TTATACCCTTTACTTGTAG------AG--TACAAGGAAATACTAGAATCATTAA-------A----ATGTAACAAAAAGAA--AAGTGTTTCCGAGCATTTCTCTAAGAAAAATATATATTT----TCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------A----ATGTAACAAAAAGAA--AAGT..........................................2311.0010100000
..TTTATCTA-----ACGGAA----TCTGAAATGTTTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.ATTTATCTA-----ACGGAA----TCTGAAATGTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000
.ATTTATCTA-----ACGGAA----TCTGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...............ACGGAA----TCTGAAATGTTTATGCA----CAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.................................GTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
GATTTATCTA-----ACGGAA----TCTGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.ATTTATCTA-----ACGGAA----TCTGAAATGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.ATTTATCTA-----ACGGAA----TCTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.............................AAATGTTTATGCA----CAAT--------------------------------AAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.ATTTATCTA-----ACGGAA----TCTGAAATGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...TTATCTA-----ACGGAA----TCTGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
........TA-----ACGGAA----TCTGAAATGTTTATGCA----C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
droYak3
GATTTATCTA-----ACAGAA----TCTGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---TTAGTATATTCAA-TTTATTT----------------------ATT-----TATTTTATTCTCTGACACATGACTAT--GAATTATC-GAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTACGGGTAATATGGTTAGTCTAAGTAAA-C--------------------------------T--TATCCCATACTCATAA------AG--TACGAGGGCATACTAAAATCGTTCA-------ATAGTATGTAACAGGAAGAAGATAGCGTTT----------CCTTAGAAAGTATATATATTATTGATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................TGAAATGTTTATGCA----CAAT--------------------------------AAGGAA-AA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..............................AATGTTTATGCA----CAAT--------------------------------AAGGAA-A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..................................TTTATGCA----CAAT--------------------------------AAGGAA-AAA--GA-----ATG---G................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEug1
GAGTCATATA-----ACTGAA----ACCA----GTTTTCGTA----CGGA--------------------------------ATGGAG---T--GG-----ATG---TTGTCGTTTATAATTTTTTTT----------------------A-----------------------------------AATT-----GTAGTGTA------------------------------------------------------------------------TTTAAATGCGCGTCAACCTTTAATTCAATT-------------------------A------TTCACATTATA--------ACAAAGCCT-ATGAACATTTGTTTC------------------------TAAA-A----------T-------------TATAT---TTATACCCGTTACTCATAG------AG--TAAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGTAGAACGAAACGTTTCCG------ACCCTATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
droBia1
CATTTATTTC-----AGGG---------GAATTGTTCATCAA----CAAC--------------------------------AAGAAG-AACAACTAAAAGAAG---TTGGGATGTGCAAATAATTGT----------GTGTTGTGA---AAA-----TAAT-------------TTTGACTAG--GATT-----GTATAATATTT---------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------TTTG------------------------TACA-----------AA-----T------ATATTA---TTATATCCGTTACTCGTAG------AG--TAAA-AGGTATACTAGATTCGTCGG-------AAAGTATATAATGCGTAGAAGGAAACGTTCGCG------ACCCTACAAAGTACATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
droTak1
GAATTATTTA-----A----A----CCTGATATATT-AAGAA----CAG---------------------------------AAGAAA-ACA--GA-----TTGAACTTAAAATATTTAAATTTCTTT------------------------------------------------------TA--AATTTGTT-TAACTAAAAAA---------ATGTCGAATT---------------AAAAGAAATATAATTGAAATATTAATTTAATTGAATTTGAA-------------------------------------------------A------ATCAAAT------------------------------------------------------------------------------TTTTTG------ATATTA---TTATACCCGTTACTCGTAG------AG--TAAAAGGGTATACTAGATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTCCG------ACCCCATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
droEle1
AGTATATTTA-----AGTATAT---TTAAGTATATTTAAGTA----TATT--------------------------------TAAGTA-T-----------ATT---TAAGTATATTTAAGTATATTT----------------------AA---------GTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAGTATATTT---AAGTAT-------------ATTTAAGTATATTAAAGTATATTTAAGTATA-TTTAGTATAT-T-----G----AGTTATAT---TTATACCC-TTGC----AG--------------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACATCTCCG------ACCCTATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
droRho1
GTTTTATCAGACAAAACGGAT----TCCATAATGTTT------------T--------------------------------AACTAA-AAA--GT-----TAT---TTCTTATATTTT--------AAATATTA------------ATATTT-----TTATTTATTTACTCT-----------------TA-----GGTTTCA---------------------------------------------------------------------------------------------AT-------------GC---------------------------------------------AATTTCAAGATACAT-------------------------CTAACATAAG-G---------AA-----T------ATATTT---TTATACCCGTTACTCGTAG------AG--TAAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTAACAGCTAGAAGGAAGCGTTTACA------ACCCTATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
droFic1
AATTAATATA-----AATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------AA-----T------TAGTTT---TTATACCC-TT----GCAG------AG--CAA-AGGGTATTATAATTTCATTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAG------ACCCCATAAAGTGTATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
droKik1
TATTTATATA-----AATG-------CTGAAAAAAATAT--A----AAGT-AA---TATA----T-ATA--------T-------ATA-T-----------AAA---TTAATACGATTAAATTTTT-T----------------------TTT-----TAATTTTATCAAAGACAAAT------------TATT-ATATGATATGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATATA-CACATTTTAT-A-----T----TTCTTTTT---TTATACCC-TTGC----A----------------AAGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACCTTTCCG------ACCCTATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
droAna3
TAC-------------CGTAA----TTTTTGGTTTTAATGTA----TAAT--------------------------------ACTGTA-CAG--TA-----AA-----AAGTGGACTCAATGTTTTTG----------------------AGT-----ACAATTATCTGTT-GTACATTACTGT--GGTGCTGG-GAATGA-ATTT--------------TTTCA--------------------------------------------------TGCAG-------------------------------------------------------------------------------ATGTCTAATTAATTC-------------------------TATTAATAAAAC---------AA-----T------AATTTG---TTATACCC-TTGC----AG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCG------ACCCTATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCAGTGAAGGAGACATC.......................................28200.55110110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGGTCA-------AAAGTGTGCA..........................................................25200.50100100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTTGGTCA-------AAAGTGTGC...........................................................22200.357000007
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCA-------AAAGTGTGCAACGCAGTGA.................................................25200.255000005
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------AAAGTGTGCAACGCAGTGAAGGAG............................................26200.153000003
..............................................TAAT--------------------------------ACTGTA-CAG--TA-----AA-----CGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.111000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTCA-------AAAGTGTGCAACG.......................................................22200.102000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGCAACGCAGTGAAGGAGACAT........................................27200.102002000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCA-------AAAGTGTGCAACGCAGTGAAGG..............................................26200.051100000
droBip1
GATTTTTATG-----ACAAAA----ATTAAAATAT------------AACT---CTTATTTTCA-ATTTTTATGATAATATTAAAGAA-TAA--GA-----ATTA--TT-----TTTCAA-TTT-----------------------------------------------------------------TTATA-AAAAAATAAATAAAAATTATAATTCAATTTTTTTAAAAATATTGC---------------------------------------------AA------ATAAGTGTTACG-------------------------------------------------------------------------------------------------------A-T----------------T------CAATTT---TTATACCC-TTGC----AG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCG------ACCCTATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotal
No Reads
dp5
GAGAT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------TCTTGTTTTTT--------TATTTTTT------------ATTTTT-----T------------------------------TTTTT-AAAGAATATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATATGTATA------T------AT---TAT------A-TTAAATGTAT-T-----T----ATTTATTA---TTATACCCGATACTCAAAA----TGAG--TATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCG------ACCCCATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
GAGAT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25216.503301700000970
...........................TGAA---------CGCATTTAAT----------------------------------------------------------TCTTGTTTTTT--------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................2622.0040000000040
...........................TGAA---------CGCATTTAAT----------------------------------------------------------TCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1922.0040400000000
..GAT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2322.0040000000130
...........................TGAA---------CGCATTTAAT----------------------------------------------------------TCTTGTTTTTT--------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2522.0040000000400
GAGAT------------AGAA----TTTGAA---------CGCATTTAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.0040000000400
....T------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------TCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.0040200000110
GAGAT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------TC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2722.0040300000100
..................GAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------TCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2521.0020200000000
...AT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
GAGAT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010100000000
GAGAT------------AGAA----TTTGAA---------CGCATTTAAT----------------------------------------------------------TCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010100000000
............................GAA---------CGCATTTAAT----------------------------------------------------------TCTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGT...............................................................20200.4590090000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGA.............................................................21200.2040400000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG--TATTGGGGTATATTAGATTTGTG.............................................................................27200.1020200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATG................................................................19200.1020000020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TA---TTATACCCGATACTCAAAA----..........................................................................................................21200.0510001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGGAAT...........................................22200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTAACGTC.....................................................23200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCG------ACCCCATAAAGTATAT.............22200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAATCGTTTCCG------ACCCCATAAAG..................28200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG--TATTGGGGTATATTAG....................................................................................19200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTG....................................................................19200.0510000100000
droPer2
GAATAATTTA-----AAAAAAAATAATAGCACTATTTATCA------------------------AAGT--------AGATTAAGGAA-AAC--AA-----TTGAATTGAAATAATTCAAATTTCCGT----------------------TTT-----TAAAAAATGC---GACACTTGAATAC--GAT---------------------------------------------------------------------------------------------------------------------------------------------A------TTCACATTGAA------------------------------------------------------------A-----------AA-----T------ATTATA---TTATACCCGATACTCAAAA----TGAG--TATATGAGAAAATTTGATTTGTGGTGAAAATATATGTGTGTAACGTCCAGAAGGAATCGTTTCCG------ACCCTATAAAGTATATATCTTCTTGATCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................AAC--AA-----TTGAATTGAAATAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droWil2
CATTTGTCCA---TAACGCAT----TTTGAAATATTAAGAAA----TATT--------------A-AGT--------C-------GAA-TAA--GTA----ATG---CGAGTTATTTTAAATG---------GAATGGGCTTTTG--CCCTTT-----TGACTT--TTGCTCTTGTAAAACTCG--GTTTTATAAAAACTATAAGAAACGATAATATTTCGTTTT--------------------------------------------------GACTG-------------AC--AT-------------CC-------AATTA----GAGCAAATT-----------------------------------------------------------------------------------TCAATG------ACATTT---TTATACCGTACAACCATAG------GT--TAAAATGGTATATTAATGTCGTCAA-------AATGTATGTAACAGGTAGAAGGAAGCTTTTCCG------ACCCTGTAAAGTATATTTATTCTTGATCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGTAGAAGGAAGC..........................................24150.13200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------AATGTATGTAACAGGTAG..................................................21200.10202000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGTAGAAGGAA............................................24150.07100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAA............................................20180.06100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGGA.............................................18190.05100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCAA-------AATGTATGTAACAGG.....................................................21200.05101000
droVir3
AT-ATATTTA-----TGGGAG----TATGAGCTATTAACT-----------AGA--TATT----------------------TATGAATGAA--TA-----TTT---TTAGCCAATTCAGATTTGCTA----------------------GTA-----TACTTTATAT-TAAATTCAACACTTGTCAACTTAAT-AAACTTTGAGT----------------------------------------------------------------------------------------------------------AC---------------------------------------------AGAAGCAAAAATCTT-------------------------GATAAATAAT-T---------GT-----T-------AGATT---TTA---------------------------------ATACTCTAATTTTGTCGT-------AAAGCGTGTAACGCATAGAAGGAGACATTTCCA------AACCGATAAAGTATATAGATTCTTGATCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTAACGCATAGAAGGAGAC..........................................2280.131000000000000000000000000000001000000000000000000000000000000000
droMoj3
AT-TTATTTA-----ATAT----------AAATGTTTATTTA----TAACTAGAC-TATT----------------------T-------TT--AA-----ATA---TTATTATTTATTAATTTATTT----------------------ATT-----TAATTTAA-------------------------------------------------------------------------------------------------------------TTTAAATGTCTG------ATTAATTTAACTATTCAGTGCCGAAATATATTACAGAA------TT-----------------------------------------------------------------------------------TTCTTG------GTAAAT---TTATACCCTGAACCCATTGAAAATGGG-AAATCAGGGTATAATGGTTTTGTT-A-------AAAGTATGTAACAGGTAGAAGGAGGCGAGGCAG------ACCCCATAAAGTATATATATTCTTGATCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTATAATGGTTT.................................................................................24205.2510500000105
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGG-AAATCAGGGTATAATGGT...................................................................................22200.357070000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTTTGTT-A-------AAAGTATGTAACA.......................................................25200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTT-A-------AAAGTATGTAACAGG.....................................................21200.051100000
droGri2
TAA---------------------------AATAAAAATATG----CAAT--------------------------------TAAGAA-TAC--TA-----ATG---TCAATATTTATTTATTTGGTT----------------------TTTTAATATT-------------------------------ATA-AAATAATTAGCACAAAAAATGAGCCGGTAGTAATTAGTATAATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAAT-T---------GT-----TAGATT-TGACTCTAATTACTTCCAATACACAG-T----TGATCATTAAAGGGTATAATGGTTTTATGCA-------AATGTATGTAACAGGCAGAAAGAAGCATCTCCG------TCCCCATAAAGTATATATATTATTGATCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:09 PM