ID:

dsi_16663

 Coordinate:

3r:1364-1523 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.5 -4.7 -4.7 -4.7

Flybase annnotation

CDS [3r_1542_2352_+]; five_prime_UTR [3r_811_1541_+]; exon [3r_811_2352_+]

No Repeatable elements found

Sense Strand Reads

####################################################################################################################################################################################################################################################################
GACGAACGGCACCCAGGCACAGACACAGCTACAGGCCCAGAAATACCACTGCATACGACACGAACGTGGCCAGCACACAAAGCAAAACCAGAAAATCCACATTTTTTCGACCTGCTCTCCGCCCGTGTCTCTCATCTCTTTTCGTCGCGCTCTCGACTGGAACGCAATACCAAGACCACAACCAACAGCTACAGCTTTAGGTGTTTGTAGGTAGATTACGTAGTTGCAATGGGCGACTCCACGCCCATTTGCCGATGCCG
************************************************************************************************.................((..........................((((((......)))).))...))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M024
male body		 M025
embryo
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
................................................................................................................................................TCGCGCTCTCGACTGGAACGC............................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TGTAGGTAGATTACGTAGT.................................... 19 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0
................................................................................................CCACATTTTTTCGACCTG.................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTCTTTTCGTCGCGCTCT........................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGTCTCTCATCTCTTTTCG.................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................ACAAAGCAAAACCAGA........................................................................................................................................................................ 16 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................AGGTGTTTGTAGGTAGATTAC......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................CGACGCGAACGTGGCCGGCAC........................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................GCACACAAAGCAAAACCA.......................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CGCAATACCAAGACCACAACC............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTCTTTTCGTCGCGCTCTCGA........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................ATACGACACGAACGTGGCCAG........................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGTGTTTGTAGGTAGAT............................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTGCAATGGGCGACTCCA................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................GCACAGACACAGCTACAG.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTGTTTGTAGGTAGATTACG........................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................ATTACGGAGTTGCAATGGGCG......................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CGTAGTTGCAATGGGCGACTC..................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TAGTTGCAATGGGCGACT...................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TAGGTAGATTACGTAGTTGCAATG............................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTGTTTGTAGGTAGATTACGTAGT.................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TACGTAGTTGCAATGGGC.......................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................CACATTTTTTCGACCTGCT................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGCTTTAGGTGTTTGTAGGTAGATT........................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGTAGATTAGGTAGTT................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................GCAATGGGCGACTCC.................... 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................ACCCAGTAAATCCACATTTGTT......................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1
................................................................CGTGGCCAGGACCCAACGC................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...............................................ACTGCATACGACCTGA..................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CTGCTTGCCGTGGGTCCGTGTCTGTGTCGATGTCCGGGTCTTTATGGTGACGTATGCTGTGCTTGCACCGGTCGTGTGTTTCGTTTTGGTCTTTTAGGTGTAAAAAAGCTGGACGAGAGGCGGGCACAGAGAGTAGAGAAAAGCAGCGCGAGAGCTGACCTTGCGTTATGGTTCTGGTGTTGGTTGTCGATGTCGAAATCCACAAACATCCATCTAATGCATCAACGTTACCCGCTGAGGTGCGGGTAAACGGCTACGGC
***********************************************************************************************.................((..........................((((((......)))).))...))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902009
testis
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
............GGTCCGTGTCTGTGTCGATGT................................................................................................................................................................................................................................... 21 0 1 10.00 10 0 6 4 0 0 0 0 0 0 0 0 0 0
.....................CTGTGTCGATGTCCGGGTCTT.......................................................................................................................................................................................................................... 21 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTCGATGTCGAAATCCACAAACAT................................................... 25 0 1 3.00 3 0 0 0 2 0 0 1 0 0 0 0 0 0
..............TCCGTGTCTGTGTCGATGTC.................................................................................................................................................................................................................................. 20 0 1 3.00 3 1 0 1 0 0 0 0 0 0 1 0 0 0
................................CCCGGGTCTTTATGGTGACGT............................................................................................................................................................................................................... 21 1 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCTGGTGTTGGTTGTCGATGT................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.......CCGTGGGTCCGTGTCTGTGTC........................................................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..............TCCGTGTCTGTGTCGATGTCC................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CGGGCACAGAGAGTAGAGAAAAG..................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................CCTTGCGTTATGGTTCTGGTGT................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................CCGGGTCTTTATGGTGACGTA.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TTAGGTGTAAAAAAGCTGGA................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CTGGTGTTGGTTGTCGATG.................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............GTCCGTGTCTGTGTCGATGTC.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CTTTATGGTGACGTATGC........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................TCCGGGTCTTTAGGGTGACGT............................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTTGGTTGTCCATGCCG................................................................. 18 2 6 1.00 6 0 0 0 0 6 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TAGGTGCGGGTAAACGGCTAC... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTAGAGAAAAGCAGCGCGAGA........................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGAGGCGGGCACAGAGAGTAGA........................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TGGGGCGGGCACAGAGAGTAGA........................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................GGCCACAGAGAATAGAGA......................................................................................................................... 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........GTGGGTCCGTGTCTGTGTCGA...................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................GAGAAAAGCAGCGCGAGAGC......................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....TGCCGTGGGTCCGTGTCTGTG.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................TCTGTGTCGATGTCCGGGTCTT.......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................GAGGTGCGGGTAAACGGCTA.... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........AGGTCCGTGTCTGTGTCGATGT................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....TTGCCGTGGGTCCGTGTCTGT........................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTGGTCTTTTAGGTGTAAAAA.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................CGAGAGGCGGGCACAGAGAGT.............................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATCCATCTAATGCATCAACG................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............GCCGTGTCTGTGTCGATGTC.................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................GCTGACCTTGCGTTATGGTT....................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................TCCATCTAATGCATCAACGT................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................AATGTGTCGATGTCCGGGTCTT.......................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGAAAAGCAGCGCGAGGGC......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AGAGAAAAGCAGCGCGAGAGCTGACCTT.................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................GCGGGCACACAGAGTAGAGAA........................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................TCTGTGTCGATGTCCGGGTCT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TGTCGATGTCGAAATCCACAA....................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................GTGGTGTGGGTAAATGGCTACG.. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................ATGGTGACGTATGCTGTGCTT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................CGGGTCTTTATGGTGACGT............................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTCGATGTCGAAATCCACAAA...................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GAGAGTAGAGAAAAGCAGCGC............................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTCGATGTCGAAATCCACACA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GCTGTGCTTGCACCGGTCGTGTGTT.................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................TCGATGTCCGGGTCTTTATGG..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AGCTGACCTTGCGTTATGGTTCTGGTGT................................................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................CGGCCACAGAGAATAGAGA......................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GGTTCTGGTGTTGGTTGTCGAT..................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................GTGTCTGTGTCGATGTCCGGGTCT........................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................CCTGGTGTTGGTTGTCGATGT................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TGTTGGTTGTCGATGTCGAAA.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGCACCGGTCGTGTGTTTC.................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................ACGTATGCTGTGCTTGCACCG.............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................CTTGCGTTATGGTTCTGGTGT................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................TTTCTGTGTCGATAGCCGGGTCT........................................................................................................................................................................................................................... 23 3 6 0.83 5 0 0 0 2 0 1 2 0 0 0 0 0 0
........................................................................................................................................AAAAAAGCAGCGCGAGGTC......................................................................................................... 19 3 20 0.40 8 8 0 0 0 0 0 0 0 0 0 0 0 0
......................TGTGTGGATGTCCGGGT............................................................................................................................................................................................................................. 17 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................TATGTTCTGCTTGCACCGGTG........................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................AAGCAGCGCGAGGGC......................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................TCTCTGTGTCGATAGCCGGGTCT........................................................................................................................................................................................................................... 23 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................CTGTGTCGATGGCCGGGTCT........................................................................................................................................................................................................................... 20 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................GGATCTGGTGTTGGT............................................................................ 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGCAGCGCGAGAACT........................................................................................................ 15 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................ATGGTTCTGGTCTTGGTT........................................................................... 18 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGATGTCGGGGTCTT.......................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........GTGGGTCCAGGTCTGCGTCGA...................................................................................................................................................................................................................................... 21 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATGGTGCTGGTTTTGGTTG.......................................................................... 19 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................TCCGGATCTTAATGGTG................................................................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AAAAAAGCAGCGCGA............................................................................................................. 15 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTGGTTGTCTATGTCGA................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................TGTTTTGGTCTTTTAG................................................................................................................................................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1314-1573 + dsi_16663 ------------GACGAACGGCAC--CCAGGCACAGAC----ACAGCT----------AC--AGGCCCA------------------------------------------------------------------------GAAATACCACTGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCAAAACCAGAAAATCCACATTTTTTCGAC-CTG--CTCTCCGC-CCGTGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------GTCGCGCTCTCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAACC----------------------------------------AA-------CAGCTACAG------------------CTTTAG------------GT------------GTTTG------------TAGGTAGATTACGTAG----TTGCAATGGGCGACTCCACGCCCATTTGCCGATGCCG
droSec2 scaffold_6:135127-135386 + ------------GACGAACGGCAC--CCAGGCACAGAC----ACAGCT----------AC--AGTCGCA------------------------------------------------------------------------GAAATACCACTGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCAAAACCAGAAAATCCACATTTTTTCGAC-CTG--CTCTCCGC-CCGTGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAACC----------------------------------------AA-------CAGCTACAG------------------CTTTAG------------GT------------GTTTG------------TAGGTAGATTACGTAG----TTGCAATGGGCGACTCCACGCCCATTTGCCGATGCCG
dm3 chr3R:887-1146 + ------------GACGCACGGCAC--CCAGGCACACAC----ACAGCC----------AC--ATTTGCA------------------------------------------------------------------------GAAATACCACTAC--ATACGAAACGAACGTGGCCAGCACA----CA-AGCGAAACCGGAAAATCCACATTTTTTAGAC-CTG--CTCTCTGTCCCGCGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------ATTACGCTCTCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAATC----------------------------------------AA-------CAGCTACAG------------------CTTTAG------------GT------------GTTTG------------AAGGTAGATTACGTAG----TTGCAATGGGCGACTCCACGCCCATTTGCCGATGCCG
droEre2 scaffold_4770:363400-363659 + ------------TTAGAGCGGTAC--CTGAGCACAAAC----ACAGCT----------AC--AGTCGCA------------------------------------------------------------------------GAAATACCTGCGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAATCCACATTTTTCG-AC-CTG--CTCTCTGTGCAGTGCCTTTCCTCTCTTTCC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGGAACGAT-------------------------------------------------------------ACACC------AAGCC-------------CA-AAACC----------------------------------------AA-------CAGCTTCAG------------------CTTTAC------------GT------------GTTTG------------TAGGTACATTACGTAG----CTGTAATGGGCGACTCCACGCCCATTTGCCGATGCCG
droYak3 3R:367313-367578 + ------------TTAGAGCGGTAC--TCGGGCACAGAC----ACAGCT----------AC--AGTGCCA------------------------------------------------------------------------GAAATACCTGTGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAATCCACATTTTTCG-AC-CTG--CTCTCTGTGCCGTGCCTTTCCTCTCTTTCC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGAAACGCT-------------------------------------------------------------ATACC------GAGAC-------------CA-AAACC----------------------------------------AA-AACCACTAGATACAT------------------CTTTAC------------GT------------GATCG------------TAGGTATATTACGTAG----CTGCAATGGGCGACTCTACGCCCATTTGCCGATGTCG
droEug1 scf7180000409740:20862-21078 + ------------AACGAACT-----------CAAAAAC----ATAAC----------------------------------------------------------------------------------------------GACAAGCTTTCG---------------------CATAGCC----CAAAGTAAAACCAGAAAGTCCACATTTTTTG-AG-CTG--TCCTCAGC---------------TCTTTTC-------------------------------------------------------------------------------------TTATCGAT-TCGGA---------TTTAACGCAGCTTAA-------------------------------------------------------------------AAGAAAAAG-TTAAATTTTCGT-------------------------------------------------------------CTTTAGCT------ATAGTAAATC------------CT------------ATTAG------------TAAGTCCGATATTTGG----CCATAATGGGTGACTCCACACCCATATGCCGATGCCG
droBia1 scf7180000302098:530162-530407 - ------------CAAGAAC-GCAC--CTGGGTACAGACAGTCACAGCG----------AC--GGCCGCA------------------------------------------------------------------------GAAATACCTGTGG--A-----CACAAACGAGGCCAGCACA----CAAAGCGAAACCAGAAAGTCCACATTTTTCG-AC-CTG--CTCTCCGC-CC----TTCCCGCCTCTTCCC-------------------------------------------------------------------------------------GCCGCGCACTCGAG---------TGGAACACCGCTC--------------------------------------------------------------------------------------TTTAG-------------------------------------------------------------CTCCAGCT------ACCGCACTAC------------GA------------GCTAG------------TGATTCCGCTACGTAG----CCACAATGGGCGACTCCACGCCCATCTGTCGGTGCCG
droTak1 scf7180000411000:27264-27499 + ------------TAAGAAC-GCAC--CTGGGCACAGAC----ACAGCG----------AC--AGCCACA------------------------------------------------------------------------GAAATACCTGTGC--A-----CACGAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAGTCCACATTTTTCG-AC-CTG--CTCTGCGC-CC----CCCTCTTCCCTTCCA-------------------------------------------------------------------------------------GTCGTGCTCTCGAC---------TGGAACGCCGCT----------------------------------------------------------------------------------------------C----------------------------------------TA-------CAGCTACAG------------------CACAGC------------GT------------ATTAG------------TAAGTCCGCTACGTAG----CCACAATGGGCGACTCCACGCCCATTTGTCGGTGCCG
droEle1 scf7180000490677:3626-3869 - ------------TAAGAACCGCAC--CTGGGCACAGAC----ACAGTC----------AC--AGTCACA------------------------------------------------------------------------GAAATACCTATGC--C-----AACAAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAGTCCACATTTTTTTGAC-CTG--CTCTTCGC---------------TCTTCTC-------------------------------------------------------------------------------------CTCGCGCTCTCGGT---------TGGAACGTCGCTCCCC----------------------------------------------------------A------AAGCT-------------CG-AGCTC----------------------------------------TG-------TATCTATAG------------------TACTAC------------GT------------ATTCG------------TAAGTCCGCTACGTAG----CCACAATGGGCGACTCCACGCCCATCTGTCGGTGCCG
droRho1 scf7180000766296:23481-23714 + ------------TAAGAACCGCAC--CTGGGCACAGAC----ACAGT------------------CACA------------------------------------------------------------------------GAAATACCTGTGC--A-----AACGAACGTGGCCAGCATA----CAAAGCGAAACCAGAAAATCCACATTTTTCG-AC-TTG--CTCCAAGC-TC-----------------TC-------------------------------------------------------------------------------------CTCGCGCTCTCGAC---------TGGAACGTCGCTCCCC-----------------------------------------------------------------AGAGC-------------TACACCTC----------------------------------------TG-------TATCTATAG------------------CTCTAC------------GT------------ATTCG------------TAAGTCCGCTACGTAG----CCACAATGAGCGACTCCACTCCCATCTGTCGGTGCCG
droFic1 scf7180000453443:14188-14421 - ------------TAAGAACCGCAC--CTGGGTACAGAT----ACAGT------------------CGCA------------------------------------------------------------------------GAAATACCTGTGC--A-----CACAAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAATCCACATTTTT-G-GC-CTG--CTCTTTGC---------------TTTTTCC-------------------------------------------------------------------------------------GTGGCGCTCTCGAT---------TGGAACGCCGCTCCCC-----------------------------------------------------------------AGGTC-------------CACAG-------------------------------------------------------------CTCTAGCT------GTATCACAAC------------GC------------ACTCG------------CAAGACAGCAACGTAG----CCACGATGGGCGACTCCACGCCCATCTGTCGGTGTCG
droKik1 scf7180000302388:2002856-2003140 + ------------TGAGAACCGAAC--CTGGTCACCGAC----ACAGGC----------AC--AGTTAAA--------------------TACATACACCAGCAGCCAGACA----------------------------ACGAAATACCTGTGC--A-----CACGGACGTGGATAGCACA----CGAAGCAAAACCAGAAAATCCACATTGCTTG-AGCCCG--CTTCCCCT---TCGCCTCCCGTCACTCTTCACGACTAGTTTGGATTCGTGCCTGAGTT--------------------------------------------------------------------------------TCAC--------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTACG------------------AAA--CC--------TTCTCCACGGC-------GACTGTTGCTCTGCCACTGGGTCTG---CTCAG--CCGGACAATGGGTGACTCCACGCCCATCTGCCGCTGCCG
droAna3 scaffold_13340:3369688-3370047 + GCGGCGGCAGTTTAAGAACCGCAC--CTGGACACAGAT----ACAAGTCA----ACACAC----ATACA--------GA---------GAATATACACTCGCAGCCAGACGGCTAAAAAAAA-TTCAGAAAAAAAAATAAAGAAATACCTGTGC--A-----CACGGACGTGGCTGGCACA----CAAAGCCAAACCAGAAAATCCACATTGTTCG-GGCTAG--TTCGT---------------------------------------------CTCGTGTTGTCGTTGTCGTAGTCGTTG-TCTCGTTCTCTTACTCGGTACCCCCTTCTTGCTTGGTGTCGCGCCCCC---TCTACAATA----------------AAAAATATATATA---------AAAACAAGTAACGTTTA--AAAAAACAACGTTAAG------ATA--------------------------------------------------------------------------------------------------------------------------------------------------------AGCCC--------C----ACAAAATGGGTGATTCTACGCCTATTTGCCGGTGCCG
droBip1 scf7180000396712:976825-977188 - GCGGCGGCAGTTTAAGAACCGCAC--CTGGACACAGAT----ACAAGTCAACACACACACACAC--CCA------CAGA---------GAACATACACTCGCAGCCAGACGGCTACAAAAAAGTTAAGAAA--AAAATAAAGAAATACCTGTGC--A-----CACGGACGTGGCTGGCACA----CAAAGCCAAACCAGAAAATCCACATTGTTCG-GGCTAG--TTCGT---------------------------------------------CTCGTGTTGTCGTTGTCGTAGTCGCTG-TCTCGTTCTCTTTCTCGGTACCCCCTTCTGGCTCAGTGTCGCGCCCCC---TCAACAATA----------------CAAAA---AAATA---------AAACCACGTAACGTTCA--CAAAAACAACGTAAAG------ATA--------------------------------------------------------------------------------------------------------------------------------------------------------AGCCC--------C----CCACAATGGGTGATTCTACGCCTATTTGCCGCTGCCG
dp5 2:24910089-24910388 - -------------AAGAACGA-AC--------ACACAC----ACACA------------------------------------------------------------------------------------------------------CACAC--A-----CACAGACTTGGCTAACACA----CAGAGCAAAACCAGAAAATCCACATTGTTCG-GGTTCGGGT--TC-------G------------------------------------GTCTCCGTCGCCGTCGCCGTCGCCGC-GCC-TCCGTCACTGCCCCTG---CCCCTGCCTGCTACGAG----------------------CA---------------G-CA---AGCAACTCGAAGCTCCACTACGTAGCGATCG--------------------AAACGTA----AGCCAT-C-------CAT--TCGGTTGTTGAGGCCCTTTGTTCTGGGCACAAGGAATTTTCGA-ATCTTCCAAATA--------------------------------------------------------------------------------------CTTCTGAGAATGGGAGACTCCACGCCCATTTGCCGTTGCCG
droPer2 scaffold_6:209107-209407 - -------------AAGAACGA-AC--------ACACAC----ACA--------------------------------------------------------------------------------------------------------CACAC--A-----CACAGTCTTGGCTAACACA----CAGAGCAAAACCAGAAAATCCACATTGTTCG-GGTTCGGGT--TC-------G------------------------------------GTCTCCGTCGCCGTCGCCGTCGCCGC-GCC-TCCGTCACTGCCCCTG---CCCCTGCCTGCTACCAG----------------------CA---------------G-CA---AGCAACTCGAAGCTCCACTACGTAGCGATCG--------------------AAACGTA----AGCCAT-C-------CAT--TCGGTTGTTGGGGCCCTTTGTTCTGGGCACAAGGAATTTTCGAAATCTTCCAAA---------------------------TC------------TT---------------------------------------------CTTCTGAGAATGGGAGACTCCACGCCCATTTGCCGTTGCCG
droWil2 scf2_1100000004902:8279665-8279949 + ------------TAAGAACCACAC--ACAGATACAGAC----ACAGAC----------AC--ACACACA--------GA------CAC--------ATTGATACGGATA--------------------------------CACACTCTCGCAGAGA-----CTGAGAGGAGGCTAACACA----GAAAGCCAAACCAGAAAATCCACATTGTTCG-GTGTCTCGT--TCCGC-GCGC------------------------------------GCCTACGTTGTTGTC---------------------------------------------------GTCGTCGTCGTCAC---------C-----------A---CAGAG---AGCTA---------CTACTACG-----------------------------TAACGTA----AGCCGC-C-------TGT--C-----------------------------------------------------TAGTG------------------TTGTTG------TTGTTTTCATTGTTGTTG-------TTGT--------------TG---TTCCA----CAAGAATGGGTGACTCCACACCCATTTGCCGCTGTCG
droVir3 scaffold_13047:8121174-8121470 - ------------TAAGAACCACAC--TTGAATACAGC-----ACAAA---ACACACACAT--ATACACACAAATACAGACACGCACAC--------GCTGGC----------------------------------------GCATACCTGTGTGTG-----TTTGTACGTGGCTAACATA----TAAAGCAAAACCAGAAAATCCACATTGTTCG-GTCTCG--GTGCG-------C------------------------------------GCCTACGTT--------------------------------------------------------------------------------GCCTACGCT---A---CG----------------------------TAAAGAACGCG----------------CATAACGTA----AGACG-TTTT--GTTTT-------------------------------------------------------------------GTTATTGTTGTTGCCGTTCCTGTTGCTGT------TGCTGTTGCTGTTCC------------TGTTGCTG--TTGCTG----TCACAATGGGCGACTCCACGCCCATTTGCCGCTGCCG
droMoj3 scaffold_6540:28071037-28071321 + ------------TAAGAACCACAC--TTGAATACACC-----ACAAA---GCACAAACAC--ACACACACACGCACAAGCACGCACAC--------ACTGGTA--------------------------------------GGCATACCTGTGTGTG-----TAGGTACGTGGCTAACATACATATAAAGCAAAACCAGAAAATCCACATTGCTCG-GTCTCG--GTGCG-------C------------------------------------GCCTACGTTGTCTACGTTGTCT-----------------------------------------------------------------------ACGCT---A---CG----------------------------TAAAGAACGCG----------------CATAACGTA----AGACA-TTTT--GTTTT-------------------------------------------------------------------GTT------ATCGTCG---------CT------------------GCTTC------------TGCTTCTGC--TGCTG----TGACAATGGGCGACTCCACGCCCATTTGCCGCTGCCG
droGri2 scaffold_15074:1499158-1499458 + ------------TAAGAACCACACACTCGAATACAGCT---CACA-ATAAATAAACACACACAC--ACA------CAGTTA--CACAC--------ATTGGCATATACA--------------------------------CATGTATCTGTGTGTG-----TTTGTACGTGGCTAACATA----TAAAGCAAAACCAGAAAATCCACATTGTTCG-GTCTCG--GTTCG-------C------------------------------------GCCTACGTTGC------------------------------------------------------------------------------CGTTACGCT---A---CG----------------------------TAAAGAACGCG-------------ACACTCAACGTA----AGACGCTTTT--GTTTTT-------------------------------------------------------------CTCCATCT------TTTGTAGTTCTTGTGGTTGC------TGCTGTTG-------TTGT--------------TG---TTTTA--ACTGAGAATGGGCGACTCGACGCCCATTTGCCGCTGCCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
------------GACGAACGGCAC--CCAGGCACAGAC----ACAGCT----------AC--AGGCCCA------------------------------------------------------------------------GAAATACCACTGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCAAAACCAGAAAATCCACATTTTTTCGAC-CTG--CTCTCCGC-CCGTGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------GTCGCGCTCTCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAACC----------------------------------------AA-------CAGCTACAG------------------CTTTAG------------GT------------GTTTG------------TAGGTAGATTACGTAG----TTGCAATGGGCGACTCCACGCCCATTTGCCGATGCCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................TCGCGCTCTCGAC---------TGGAACGC.........................................................................................................................................................................................................................................................................................2112.00210000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------TAGGTAGATTACGTAG----T....................................1912.00210000100000000000
............................................................................................................................................................................................................CCACATTTTTTCGAC-CTG--...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.......................................................................................................................................................................................................................................................CTCTTTTC-------------------------------------------------------------------------------------GTCGCGCTCT..............................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.............................................................................................................................................................................................................................................TGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------G.......................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................A----CAAAGCAAAACCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------GT------------GTTTG------------TAGGTAGATTAC.............................................2111.00110000000000000000
................................................................................................................................................................................GCACA----CAAAGCAAAACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................CGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAACC----------------------------------------..............................................................................................................................................2111.00100001000000000000
.......................................................................................................................................................................................................................................................CTCTTTTC-------------------------------------------------------------------------------------GTCGCGCTCTCGA...........................................................................................................................................................................................................................................................................................................2111.00110000000000000000
............................................................................................................................................................ATACGACACGAACGTGGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------GT------------GTTTG------------TAGGTAGAT................................................1811.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAATGGGCGACTCCA...................1811.00100100000000000000
..............................GCACAGAC----ACAGCT----------AC--AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------GTTTG------------TAGGTAGATTACG............................................2011.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAG----TTGCAATGGGCGACTC.....................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG----TTGCAATGGGCGACT......................1811.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTAGATTACGTAG----TTGCAATG.............................2411.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------GT------------GTTTG------------TAGGTAGATTACGTAG----T....................................2711.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTAG----TTGCAATGGGC..........................1811.00110000000000000000
.............................................................................................................................................................................................................CACATTTTTTCGAC-CTG--CT.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------CTTTAG------------GT------------GTTTG------------TAGGTAGATT...............................................2511.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATGGGCGACTCC....................1520.50100000000001000000
droSec2
------------GACGAACGGCAC--CCAGGCACAGAC----ACAGCT----------AC--AGTCGCA------------------------------------------------------------------------GAAATACCACTGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCAAAACCAGAAAATCCACATTTTTTCGAC-CTG--CTCTCCGC-CCGTGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAACC----------------------------------------AA-------CAGCTACAG------------------CTTTAG------------GT------------GTTTG------------TAGGTAGATTACGTAG----TTGCAATGGGCGACTCCACGCCCATTTGCCGATGCCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAG------------GT------------GTTTG------------TAGGTAGAT................................................2112.0020200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------GT------------GTTTG------------TAGGTAGATTAC.............................................2111.0010001
..........................................................................................................................................................................................................................................................TTTTC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TG...............................................................................................................................................................................................................................................................................................2111.0010001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------------------CTTTAG------------GT------------GTTTG------------TAGG.....................................................2111.0010100
.........................................................................................................................................................................................................................................................CTTTTC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------T................................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................................................................................................................................TTC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGG..............................................................................................................................................................................................................................................................................................2011.0011000
.............................................................................................................................................................................................................................................................TC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGG..............................................................................................................................................................................................................................................................................................1911.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATTACGTAG----TTGCAATG.............................2111.0010001
...............................................................................................................................................................................................................CATTTTTTCGAC-CTG--CTCTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
dm3
------------GACGCACGGCAC--CCAGGCACACAC----ACAGCC----------AC--ATTTGCA------------------------------------------------------------------------GAAATACCACTAC--ATACGAAACGAACGTGGCCAGCACA----CA-AGCGAAACCGGAAAATCCACATTTTTTAGAC-CTG--CTCTCTGTCCCGCGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------ATTACGCTCTCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAATC----------------------------------------AA-------CAGCTACAG------------------CTTTAG------------GT------------GTTTG------------AAGGTAGATTACGTAG----TTGCAATGGGCGACTCCACGCCCATTTGCCGATGCCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................ATTACGCTCTCGAC---------TGGAACGC.........................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------GTTTG------------AAGGTAGATTACGTA..........................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000040000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CGAACGTGGCCAGCACA----CA-AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ACTAC--ATACGAAACGAACGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGTAG----TTGCAATGGGCGA........................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000001100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------GTTTG------------AAGGTAGATTACGTA..........................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------------------CTTTAG------------GT------------GTTTG------------AAGGT....................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CGCGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAG------------GT------------GTTTG------------AAGGTAGATT...............................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000
.........................................................................................................................................................................................................................AC-CTG--CTCTCTGTCCCGCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................ACGCTCTCGAC---------TGGAACGC.........................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CTCATCTCTTTTC-------------------------------------------------------------------------------------ATTACGCTCTCG............................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................AC--ATACGAAACGAACGTGGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................CTCTGTCCCGCGTCTCTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAG------------GT------------GTTTG------------AAGGTAGATTACGT...........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTACAG------------------CTTTAG------------GT------------GTTTG------------A........................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------AAGGTAGATTACGTAG----TTGCAATGG............................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CACGGCAC--CCAGGCACACAC----A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-...........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CTAC--ATACGAAACGAACGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------GT------------GTTTG------------AAGGTAGATTACGTAG----T....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TCTTTTC-------------------------------------------------------------------------------------ATTACGCTCTCGAC---------TGGA.............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCCCATTTGCCGATGCCG2111.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CGCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAATC----------------------------------------AA-------CAGC.................................................................................................................................2711.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAG------------GT------------GTTTG------------AAGGTAGATTA..............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTACGTAG----TTGCAATGGGCG.........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACGTAG----TTGCAATGGGCG.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGATTACGTAG----TTGCAATGGGC..........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GACGCACGGCAC--CCAGGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------CA-CAATC----------------------------------------AA-------CAGCTACAG------------------CTTTAG------------G.......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCCACGCCCATTTGCCG......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTACGTAG----TTGCAATGGGCGA........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CTGTCCCGCGTCTCTCATCTC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAG----TTGCAATGGGCGACT......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ACCACTAC--ATACGAAACGAACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------GTTTG------------AAGGTAGATTACG............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAG------------------CTTTAG------------GT------------GTTTG------------AAGGTA...................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG------------AAGGTAGATTACGTAG----TTGCAA...............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CTAC--ATACGAAACGAACGTGGCCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------AAGGTAGATTACGTAG----TTGCAATG.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CACTAC--ATACGAAACGAACGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GTCCCGCGTCTCTCATCTCT.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACGTAG----TTGCAATGGGC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------GT------------GTTTG------------AAGGTAGAT................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................CGAAACGAACGTGGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AGAC-CTG--CTCTCTGTCCCGCGT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAG------------GT------------GTTTG------------AAGGTAGATTACGTA..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CA-AGCGAAACCGGAAAATCCACATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGATTACGTAG----TTGCAATG.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
............................AGGCACACAC----ACAGCC----------AC--AT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TG--CTCTCTGTCCCGCGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TCCCGCGTCTCTCATCTCTTTTC-------------------------------------------------------------------------------------AT......................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTAG----TTGCAATGGGCGACT......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TGTCCCGCGTCTCTCATCTCTT................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................TTTTTTAGAC-CTG--CTCTCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................GGCCAGCACA----CA-AGCGAAACCGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTAG----TTGCAATGGGCG.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG------------AAGGTAGATTACGTAG----T....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------ATTACGCTCTCGAC---------TGGAA............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................................................AACCGGAAAATCCACATTTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CCACTAC--ATACGAAACGAACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAG------------GT------------GTTTG------------AAGGTAGAT................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................TTC-------------------------------------------------------------------------------------ATTACGCTCTCGAC---------TGGA.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------CTTTAG------------GT------------GTTTG------------AAGGTA...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------CTTTAG------------GT------------GTTTG------------AAGGT....................................................2011.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCGAC---------TGGAACGCA-------------------------------------------------------------ATACC------AAG.............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------AAGAC-------------CA-CAATC----------------------------------------AA-------CAGCT................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAG------------GT------------GTTTG------------AAGGTAGATTAC.............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................ATTTTTTAGAC-CTG--CTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TTTC-------------------------------------------------------------------------------------ATTACGCTCTCGAC---------TGG..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TCTCATCTCTTTTC-------------------------------------------------------------------------------------ATTACGCTCTCGAC---------.................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAATGGGCGACTCCACG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAG------------------CTTTAG------------GT------------GTTTG------------AA.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTACGTAG----TTGCAATGG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................AC--ATACGAAACGAACGTGGCCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAG----TTGCAATGGGCGACT......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TACGAAACGAACGTGGCCAGCACA----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTACAG------------------CTTTAG------------GT------------GTTT......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------------------------------------ATACC------AAGAC-------------CA-CAATC----------------------------------------AA-------CAGC.................................................................................................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGTAG----TTGCAATGGGCG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GCACA----CA-AGCGAAACCGGAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAC-------------CA-CAATC----------------------------------------AA-------CAGCT................................................................................................................................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACA----CA-AGCGAAACCGGAAAATCCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TG--CTCTCTGTCCCGCGTCTCTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
------------TTAGAGCGGTAC--CTGAGCACAAAC----ACAGCT----------AC--AGTCGCA------------------------------------------------------------------------GAAATACCTGCGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAATCCACATTTTTCG-AC-CTG--CTCTCTGTGCAGTGCCTTTCCTCTCTTTCC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGGAACGAT-------------------------------------------------------------ACACC------AAGCC-------------CA-AAACC----------------------------------------AA-------CAGCTTCAG------------------CTTTAC------------GT------------GTTTG------------TAGGTACATTACGTAG----CTGTAATGGGCGACTCCACGCCCATTTGCCGATGCCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................CGCGCTCTCGAC---------TGGAACGAT-------------------------------------------------------------ACACC------A...............................................................................................................................................................................................................27122.002200000022
................................ACAAAC----ACAGCT----------AC--AGTCGCA------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
......................AC--CTGAGCACAAAC----ACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
............................................................................................................................................................................................................................................................TCC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGGAACG..........................................................................................................................................................................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................................................................CC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGGAACGAT-------------------------------------------------------------A..........................................................................................................................................................................................................................2611.0011000000
droYak3
------------TTAGAGCGGTAC--TCGGGCACAGAC----ACAGCT----------AC--AGTGCCA------------------------------------------------------------------------GAAATACCTGTGC--ATACGACACGAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAATCCACATTTTTCG-AC-CTG--CTCTCTGTGCCGTGCCTTTCCTCTCTTTCC-------------------------------------------------------------------------------------ATCGCGCTCTCGAC---------TGAAACGCT-------------------------------------------------------------ATACC------GAGAC-------------CA-AAACC----------------------------------------AA-AACCACTAGATACAT------------------CTTTAC------------GT------------GATCG------------TAGGTATATTACGTAG----CTGCAATGGGCGACTCTACGCCCATTTGCCGATGTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................G-AC-CTG--CTCTCTGTGCCGTGCCTTTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................2818.00800000000008
...............................CACAGAC----ACAGCT----------AC--AGTGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
.....................................................................................................................................................................................................................................................................................................................................................TCGCGCTCTCGAC---------TGAAACGC.........................................................................................................................................................................................................................................................................................2111.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAG----CTGCAATGGGCGAC.......................1811.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGTAG----CTGCAATGGGC..........................2011.00100100000000
droEug1
------------AACGAACT-----------CAAAAAC----ATAAC----------------------------------------------------------------------------------------------GACAAGCTTTCG---------------------CATAGCC----CAAAGTAAAACCAGAAAGTCCACATTTTTTG-AG-CTG--TCCTCAGC---------------TCTTTTC-------------------------------------------------------------------------------------TTATCGAT-TCGGA---------TTTAACGCAGCTTAA-------------------------------------------------------------------AAGAAAAAG-TTAAATTTTCGT-------------------------------------------------------------CTTTAGCT------ATAGTAAATC------------CT------------ATTAG------------TAAGTCCGATATTTGG----CCATAATGGGTGACTCCACACCCATATGCCGATGCCGSizeHit CountTotal NormTotal
No Reads
droBia1
------------CAAGAAC-GCAC--CTGGGTACAGACAGTCACAGCG----------AC--GGCCGCA------------------------------------------------------------------------GAAATACCTGTGG--A-----CACAAACGAGGCCAGCACA----CAAAGCGAAACCAGAAAGTCCACATTTTTCG-AC-CTG--CTCTCCGC-CC----TTCCCGCCTCTTCCC-------------------------------------------------------------------------------------GCCGCGCACTCGAG---------TGGAACACCGCTC--------------------------------------------------------------------------------------TTTAG-------------------------------------------------------------CTCCAGCT------ACCGCACTAC------------GA------------GCTAG------------TGATTCCGCTACGTAG----CCACAATGGGCGACTCCACGCCCATCTGTCGGTGCCGSizeHit CountTotal NormTotal
No Reads
droTak1
------------TAAGAAC-GCAC--CTGGGCACAGAC----ACAGCG----------AC--AGCCACA------------------------------------------------------------------------GAAATACCTGTGC--A-----CACGAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAGTCCACATTTTTCG-AC-CTG--CTCTGCGC-CC----CCCTCTTCCCTTCCA-------------------------------------------------------------------------------------GTCGTGCTCTCGAC---------TGGAACGCCGCT----------------------------------------------------------------------------------------------C----------------------------------------TA-------CAGCTACAG------------------CACAGC------------GT------------ATTAG------------TAAGTCCGCTACGTAG----CCACAATGGGCGACTCCACGCCCATTTGTCGGTGCCGSizeHit CountTotal NormTotal
No Reads
droEle1
------------TAAGAACCGCAC--CTGGGCACAGAC----ACAGTC----------AC--AGTCACA------------------------------------------------------------------------GAAATACCTATGC--C-----AACAAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAGTCCACATTTTTTTGAC-CTG--CTCTTCGC---------------TCTTCTC-------------------------------------------------------------------------------------CTCGCGCTCTCGGT---------TGGAACGTCGCTCCCC----------------------------------------------------------A------AAGCT-------------CG-AGCTC----------------------------------------TG-------TATCTATAG------------------TACTAC------------GT------------ATTCG------------TAAGTCCGCTACGTAG----CCACAATGGGCGACTCCACGCCCATCTGTCGGTGCCGSizeHit CountTotal NormTotal
No Reads
droRho1
------------TAAGAACCGCAC--CTGGGCACAGAC----ACAGT------------------CACA------------------------------------------------------------------------GAAATACCTGTGC--A-----AACGAACGTGGCCAGCATA----CAAAGCGAAACCAGAAAATCCACATTTTTCG-AC-TTG--CTCCAAGC-TC-----------------TC-------------------------------------------------------------------------------------CTCGCGCTCTCGAC---------TGGAACGTCGCTCCCC-----------------------------------------------------------------AGAGC-------------TACACCTC----------------------------------------TG-------TATCTATAG------------------CTCTAC------------GT------------ATTCG------------TAAGTCCGCTACGTAG----CCACAATGAGCGACTCCACTCCCATCTGTCGGTGCCGSizeHit CountTotal NormTotal
No Reads
droFic1
------------TAAGAACCGCAC--CTGGGTACAGAT----ACAGT------------------CGCA------------------------------------------------------------------------GAAATACCTGTGC--A-----CACAAACGTGGCCAGCACA----CAAAGCGAAACCAGAAAATCCACATTTTT-G-GC-CTG--CTCTTTGC---------------TTTTTCC-------------------------------------------------------------------------------------GTGGCGCTCTCGAT---------TGGAACGCCGCTCCCC-----------------------------------------------------------------AGGTC-------------CACAG-------------------------------------------------------------CTCTAGCT------GTATCACAAC------------GC------------ACTCG------------CAAGACAGCAACGTAG----CCACGATGGGCGACTCCACGCCCATCTGTCGGTGTCGSizeHit CountTotal NormTotal
No Reads
droKik1
------------TGAGAACCGAAC--CTGGTCACCGAC----ACAGGC----------AC--AGTTAAA--------------------TACATACACCAGCAGCCAGACA----------------------------ACGAAATACCTGTGC--A-----CACGGACGTGGATAGCACA----CGAAGCAAAACCAGAAAATCCACATTGCTTG-AGCCCG--CTTCCCCT---TCGCCTCCCGTCACTCTTCACGACTAGTTTGGATTCGTGCCTGAGTT--------------------------------------------------------------------------------TCAC--------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTACG------------------AAA--CC--------TTCTCCACGGC-------GACTGTTGCTCTGCCACTGGGTCTG---CTCAG--CCGGACAATGGGTGACTCCACGCCCATCTGCCGCTGCCGSizeHit CountTotal NormTotal
No Reads
droAna3
GCGGCGGCAGTTTAAGAACCGCAC--CTGGACACAGAT----ACAAGTCA----ACACAC----ATACA--------GA---------GAATATACACTCGCAGCCAGACGGCTAAAAAAAA-TTCAGAAAAAAAAATAAAGAAATACCTGTGC--A-----CACGGACGTGGCTGGCACA----CAAAGCCAAACCAGAAAATCCACATTGTTCG-GGCTAG--TTCGT---------------------------------------------CTCGTGTTGTCGTTGTCGTAGTCGTTG-TCTCGTTCTCTTACTCGGTACCCCCTTCTTGCTTGGTGTCGCGCCCCC---TCTACAATA----------------AAAAATATATATA---------AAAACAAGTAACGTTTA--AAAAAACAACGTTAAG------ATA--------------------------------------------------------------------------------------------------------------------------------------------------------AGCCC--------C----ACAAAATGGGTGATTCTACGCCTATTTGCCGGTGCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................TG-TCTCGTTCTCTTACTCGG...........................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................................................................................................................CTCGGTACCCCCTTCTTGCT............................................................................................................................................................................................................................................................................................................................2011.001000001
...................................................................................................................................................................................................................................................................................................................GTTCTCTTACTCGGTACCCC.....................................................................................................................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................................................................................................................CTCGTTCTCTTACTCGGTACC.......................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................TCTCGTTCTCTTACTCGGTAC........................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................GCTTGGTGTCGCGCCCCC---TCTACA....................................................................................................................................................................................................................................................................................................2411.001010000
.............AAGAACCGCAC--CTGGACACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................G--TTCGT---------------------------------------------CTCGTGTTGTCGT............................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAGTAACGTTTA--AAAAAACAAC..............................................................................................................................................................................................................................2611.001010000
...................................................................................................................AAAAAAA-TTCAGAAAAAACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
GCGGCGGCAGTTTAAGAACCGCAC--CTGGACACAGAT----ACAAGTCAACACACACACACAC--CCA------CAGA---------GAACATACACTCGCAGCCAGACGGCTACAAAAAAGTTAAGAAA--AAAATAAAGAAATACCTGTGC--A-----CACGGACGTGGCTGGCACA----CAAAGCCAAACCAGAAAATCCACATTGTTCG-GGCTAG--TTCGT---------------------------------------------CTCGTGTTGTCGTTGTCGTAGTCGCTG-TCTCGTTCTCTTTCTCGGTACCCCCTTCTGGCTCAGTGTCGCGCCCCC---TCAACAATA----------------CAAAA---AAATA---------AAACCACGTAACGTTCA--CAAAAACAACGTAAAG------ATA--------------------------------------------------------------------------------------------------------------------------------------------------------AGCCC--------C----CCACAATGGGTGATTCTACGCCTATTTGCCGCTGCCGSizeHit CountTotal NormTotal
No Reads
dp5
-------------AAGAACGA-AC--------ACACAC----ACACA------------------------------------------------------------------------------------------------------CACAC--A-----CACAGACTTGGCTAACACA----CAGAGCAAAACCAGAAAATCCACATTGTTCG-GGTTCGGGT--TC-------G------------------------------------GTCTCCGTCGCCGTCGCCGTCGCCGC-GCC-TCCGTCACTGCCCCTG---CCCCTGCCTGCTACGAG----------------------CA---------------G-CA---AGCAACTCGAAGCTCCACTACGTAGCGATCG--------------------AAACGTA----AGCCAT-C-------CAT--TCGGTTGTTGAGGCCCTTTGTTCTGGGCACAAGGAATTTTCGA-ATCTTCCAAATA--------------------------------------------------------------------------------------CTTCTGAGAATGGGAGACTCCACGCCCATTTGCCGTTGCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................C----ACACA------------------------------------------------------------------------------------------------------CACAC--A-----CACAGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
droPer2
-------------AAGAACGA-AC--------ACACAC----ACA--------------------------------------------------------------------------------------------------------CACAC--A-----CACAGTCTTGGCTAACACA----CAGAGCAAAACCAGAAAATCCACATTGTTCG-GGTTCGGGT--TC-------G------------------------------------GTCTCCGTCGCCGTCGCCGTCGCCGC-GCC-TCCGTCACTGCCCCTG---CCCCTGCCTGCTACCAG----------------------CA---------------G-CA---AGCAACTCGAAGCTCCACTACGTAGCGATCG--------------------AAACGTA----AGCCAT-C-------CAT--TCGGTTGTTGGGGCCCTTTGTTCTGGGCACAAGGAATTTTCGAAATCTTCCAAA---------------------------TC------------TT---------------------------------------------CTTCTGAGAATGGGAGACTCCACGCCCATTTGCCGTTGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-C-------CAT--TCGGTTGTTGGGGCCCT......................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................GTCTCCGTCGCCGTCGCC........................................................................................................................................................................................................................................................................................................................................................................1850.402200000
droWil2
------------TAAGAACCACAC--ACAGATACAGAC----ACAGAC----------AC--ACACACA--------GA------CAC--------ATTGATACGGATA--------------------------------CACACTCTCGCAGAGA-----CTGAGAGGAGGCTAACACA----GAAAGCCAAACCAGAAAATCCACATTGTTCG-GTGTCTCGT--TCCGC-GCGC------------------------------------GCCTACGTTGTTGTC---------------------------------------------------GTCGTCGTCGTCAC---------C-----------A---CAGAG---AGCTA---------CTACTACG-----------------------------TAACGTA----AGCCGC-C-------TGT--C-----------------------------------------------------TAGTG------------------TTGTTG------TTGTTTTCATTGTTGTTG-------TTGT--------------TG---TTCCA----CAAGAATGGGTGACTCCACACCCATTTGCCGCTGTCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
------------TAAGAACCACAC--TTGAATACAGC-----ACAAA---ACACACACAT--ATACACACAAATACAGACACGCACAC--------GCTGGC----------------------------------------GCATACCTGTGTGTG-----TTTGTACGTGGCTAACATA----TAAAGCAAAACCAGAAAATCCACATTGTTCG-GTCTCG--GTGCG-------C------------------------------------GCCTACGTT--------------------------------------------------------------------------------GCCTACGCT---A---CG----------------------------TAAAGAACGCG----------------CATAACGTA----AGACG-TTTT--GTTTT-------------------------------------------------------------------GTTATTGTTGTTGCCGTTCCTGTTGCTGT------TGCTGTTGCTGTTCC------------TGTTGCTG--TTGCTG----TCACAATGGGCGACTCCACGCCCATTTGCCGCTGCCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACTCCACGCCCATTTGCC.......2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CTGTGTGTG-----TTTGTACGTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAACGCG----------------CATAACGTA----AGACG-T....................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGT------TGCTGTTGCTGTTCC------------.........................................................2270.141000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGT------TGCTGTTGCTGTTCC------------.........................................................20100.101000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................TGTACGTGGCTAACATT----GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
droMoj3
------------TAAGAACCACAC--TTGAATACACC-----ACAAA---GCACAAACAC--ACACACACACGCACAAGCACGCACAC--------ACTGGTA--------------------------------------GGCATACCTGTGTGTG-----TAGGTACGTGGCTAACATACATATAAAGCAAAACCAGAAAATCCACATTGCTCG-GTCTCG--GTGCG-------C------------------------------------GCCTACGTTGTCTACGTTGTCT-----------------------------------------------------------------------ACGCT---A---CG----------------------------TAAAGAACGCG----------------CATAACGTA----AGACA-TTTT--GTTTT-------------------------------------------------------------------GTT------ATCGTCG---------CT------------------GCTTC------------TGCTTCTGC--TGCTG----TGACAATGGGCGACTCCACGCCCATTTGCCGCTGCCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGCG----------------CATAACGTA----AGACA-.....................................................................................................................................................................................................2211.001001000
................................................................................................................................................................................................................................................................................................................................................................................CGCT---A---CG----------------------------TAAAGAACGCG----------------........................................................................................................................................................................................................................1811.001100000
droGri2
------------TAAGAACCACACACTCGAATACAGCT---CACA-ATAAATAAACACACACAC--ACA------CAGTTA--CACAC--------ATTGGCATATACA--------------------------------CATGTATCTGTGTGTG-----TTTGTACGTGGCTAACATA----TAAAGCAAAACCAGAAAATCCACATTGTTCG-GTCTCG--GTTCG-------C------------------------------------GCCTACGTTGC------------------------------------------------------------------------------CGTTACGCT---A---CG----------------------------TAAAGAACGCG-------------ACACTCAACGTA----AGACGCTTTT--GTTTTT-------------------------------------------------------------CTCCATCT------TTTGTAGTTCTTGTGGTTGC------TGCTGTTG-------TTGT--------------TG---TTTTA--ACTGAGAATGGGCGACTCGACGCCCATTTGCCGCTGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................CAGAAAATCCACATTGTTCG-GT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/18/2015 at 01:36 PM