ID:

dsi_16658

 Coordinate:

3r:4309068-4309217 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.3 -20.3 -20.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCCGCCAGCTGACCAACTCGGGATCCGTCTCCGTTTCCGTGTCCGATGATGTAAGTGAAGGGTTCAAAAACAAAGTCTATATGGGAGATATAATTTCTTTTTCGAAGGATTCAAAGAACATAGTAGCTCTTGGAGATATTATATATTTATGAAGGATGAAGTAGATTAGTACTTAGCTACTTTTGGTGGATAATAGCTATTGTGCTAGGAATCTATTTATTTACCTACACAGAAAAGTAATCAAATTAGT
**************************************************.....((((...(((.((((..((((.(((((.....)))))))))..)))).)))...))))........(((((((....(((.(((((....(((((.....)))))......)))))))))))))))..((((........)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
............CCAACTCGGGATCCGTCTCCGT........................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0
............................CTCCGTTTCCGTGTCCGATGATG....................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
................CTCGGGATCCGTCTCCGTTTCC.................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
............................CTCCGTTTCCGTGTCCGATG.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.....................GATCCGTCTCCGTTTCCG................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................TTAGTACTTAGCTAC...................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0
...........ACCAACTCGGGATCCGTCTCCG......................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................GGTTAGTACTTAGCTCC...................................................................... 17 2 8 0.25 2 0 0 2 0 0 0 0
...................................................................................................................................................................GGTTAGTACTTAGCCA....................................................................... 16 2 20 0.20 4 0 0 4 0 0 0 0
.........................................................................................................................AATAGCTCTTGGAGA.................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 1 0
....................................................................................................................................................ATGAAGGACGTAGTAG...................................................................................... 16 2 20 0.10 2 0 0 0 1 0 0 1
..................................TTCCGTGTCGGACCATGTA..................................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 1 0 0 0
...................................................TAAGTCAAGGGTTCTAA...................................................................................................................................................................................... 17 2 16 0.06 1 0 0 1 0 0 0 0

Anti-sense strand reads

GGGCGGTCGACTGGTTGAGCCCTAGGCAGAGGCAAAGGCACAGGCTACTACATTCACTTCCCAAGTTTTTGTTTCAGATATACCCTCTATATTAAAGAAAAAGCTTCCTAAGTTTCTTGTATCATCGAGAACCTCTATAATATATAAATACTTCCTACTTCATCTAATCATGAATCGATGAAAACCACCTATTATCGATAACACGATCCTTAGATAAATAAATGGATGTGTCTTTTCATTAGTTTAATCA
**************************************************.....((((...(((.((((..((((.(((((.....)))))))))..)))).)))...))))........(((((((....(((.(((((....(((((.....)))))......)))))))))))))))..((((........)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body
.........................................................................................................................................................................................................CAGGATCCGTACATAAATAAA............................ 21 3 6 1.00 6 3 2 0 1
........................................................................................................................................................................................................ACAGGATCCGTACATAAATAA............................. 21 3 5 0.60 3 3 0 0 0
..............................................................................................................AGTTAGTTGTGTCATCGAGA........................................................................................................................ 20 3 3 0.33 1 0 0 1 0
.........................................................................................................................................................................................................CAGGATCCGTACATAAATAA............................. 20 3 15 0.27 4 2 2 0 0
........................................................................................................................................................................................................ACAGGATCCGTACATAAATA.............................. 20 3 14 0.07 1 1 0 0 0

Generated: 04/24/2015 at 01:14 AM