dsi_16585

Name	Class	Family	Strand
DNAREP1_DYak	RC	Helitron	+
AT_rich	Low_complexity	Low_complexity	+

ATAAAGTATAAGTATTCCCGATAAGGATTACTAGCCGAGTGGATTTATCTGTCCGCCTTTCTGTCCGTCCGTATAAACTTCGTGATTATATCATTTATAACATTGAAATTCCCATTTTAACGCCCACTGTTTTGTTATTTTTTTCTATTTATACGCAAAAAAGGTTGTTATATTTAATTTTATAAATTTATTTCTTCCAGGGCACAAGAGTTGGAAACGTTCAAGCTGAAAGGCAGGACTGGGTTTATGA ************************************************....((((((.((......((((((((....(((((...)))))..(((((((((((((....)))))))............)))))).........))))))))))..))))))..(((((........)))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries
............................................................................ACTTCGTCATTATATCATATATA.......................................................................................................................................................	23	2	1	1.00	1	1	0	0	0
............................................................................ACTTCGTCATTATATCATATA.........................................................................................................................................................	21	2	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................CAAGCTGAAAGGCAGGACTGG........	21	0	1	1.00	1	1	0	0	0
.................................................................CGTCGGTTTAAACTTCG........................................................................................................................................................................	17	2	3	0.67	2	0	2	0	0
............................................................................ACTTCGTCATTATATCATATAG........................................................................................................................................................	22	3	2	0.50	1	0	0	1	0
.................................................................CGTACGTTTAAACTTCG........................................................................................................................................................................	17	2	6	0.33	2	0	2	0	0
..........................................................................................................................................................................................GTTATTTCTTCCGGGGCA..............................................	18	2	3	0.33	1	0	1	0	0
................................................................................................................................................................................................................AGTTGGAATCGTTCAACTTG......................	20	3	10	0.10	1	0	1	0	0
.........................................................TTTTTGTCCGTCCGTAAAAA.............................................................................................................................................................................	20	2	10	0.10	1	0	0	0	1
..............................................................GTCCGTCGGTTTAAACTTCGA.......................................................................................................................................................................	21	3	11	0.09	1	0	1	0	0
...................................................................................................ACATTGGAATTCCCA........................................................................................................................................	15	1	15	0.07	1	0	1	0	0
....................................................CCGCCTCTCTGCCCGTCCGA..................................................................................................................................................................................	20	3	15	0.07	1	0	0	0	1
........................................................................................................................................................................................................................................GCAGAACTGGCTTTATG.	17	2	20	0.05	1	0	1	0	0

TATTTCATATTCATAAGGGCTATTCCTAATGATCGGCTCACCTAAATAGACAGGCGGAAAGACAGGCAGGCATATTTGAAGCACTAATATAGTAAATATTGTAACTTTAAGGGTAAAATTGCGGGTGACAAAACAATAAAAAAAGATAAATATGCGTTTTTTCCAACAATATAAATTAAAATATTTAAATAAAGAAGGTCCCGTGTTCTCAACCTTTGCAAGTTCGACTTTCCGTCCTGACCCAAATACT ************************************************....((((((.((......((((((((....(((((...)))))..(((((((((((((....)))))))............)))))).........))))))))))..))))))..(((((........)))))...............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
...........................................AAATAGACGGGCGGAAAGACAGGC.......................................................................................................................................................................................	24	1	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................AAATAAAGATTAATATGCGTTTTT.........................................................................................	24	2	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................TGTGCGTTTTTACCAACACTAT..............................................................................	22	3	2	0.50	1	0	0	0	1	0	0	0
...............................................AGACAGGCGGAAAGA............................................................................................................................................................................................	15	0	2	0.50	1	0	0	1	0	0	0	0
...............................................................................................................................ATAAAACAATAAAATAAGATGAAT...................................................................................................	24	3	4	0.25	1	0	0	0	0	1	0	0
.......................................................................................................................................ATGAAAGAAGATGAATATGCG..............................................................................................	21	3	4	0.25	1	1	0	0	0	0	0	0
.....................................................................................................................ATTGCGGGTGACACCACACT.................................................................................................................	20	3	5	0.20	1	0	0	0	0	0	1	0
........................................................................................................................................................................................TTATATATAGAAGGTCCGGT..............................................	20	3	15	0.07	1	0	0	1	0	0	0	0
.................................................................................................................................AAAACAATAAAATAAGATGAAAA..................................................................................................	23	3	20	0.05	1	0	0	0	0	1	0	0
..............................................................................................................................................AAGATAAAAATGCGTGTT..........................................................................................	18	2	20	0.05	1	1	0	0	0	0	0	0
...................................................................................CTAATATACTCAATATGGT....................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................AAAAAGAGAAAGATGCGT.............................................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:3527129-3527378 +	dsi_16585	ATAAAG---------TATAAGTATTCCCGATAAGGATTACTAGCCGAGTGGATTTATC--TGTCCGCCT----TTCTGTCCGTCC---------------------------------------------------------------------------------GTATAAACTTC----GTGATT------A---------TATCAT--------------------------TTAT-----------------------------------AACATTGAA-------------------------------------------------------------------ATTCCCATTTTAACGCCCACTGTTTTGTTATTTT-TTTCTATT---------------TATACGCAAAA-----AAGGTTG-----------------TT---------------------------------------------------------------------------------------------------------------------ATATTTAATTTTATAAAT-------------------------------------------------------------------------------------------------TTATTTCTTCCAGGGCACAAGAGTTGGAAACGTTCAAGCTGAAAGGCAGGACTGGGTTTATGA
droSec2	scaffold_6:3709453-3709731 +		ATAAAG---------TAGAAGTATTCCCGATAAGGATCACTAGCCGAGTGGATTTATC--TGTCCGCCT----TTCTGTCCGTCC---------------------------------------------------------------------------------GTATAAACTTC----GTGATT------T--------ATTA------------------------------AAAAA--GGT----A-----------------------------GAAAGTT------------------------------------CTACTCGTAGTTGTTTAAAACATTGATATTCCCATTTTAACGCCCACTGTTTTGTTATTTTTTTTCTATT---------------GATACGCAAAA-----AAGGTTA-----------------TG---------------------------------------------------------------------------------------------------------------------ATATTTAATTTTATAAAT-------------------------------------------------------------------------------------------------TTATTTCTTTCAGGGCACAAGAGTTGGAAACGTTCAAGCTGAAAGGCAGGACTGGGTTTATGA
dm3	chr3R:2867241-2867501 +		A----------------------TTCGTGATAAGGATCACTAGCCGAGTAGATCTGGCTATGTCAGTCC----GTCTGTATGAAC-----------------------------------------------------------------------------------------GTA----TCGATC------TCAGGAACTATAGAAT--------------------------ATAG-----------------------------------AATA--------------------------------------------------------------------------------C----------------------------------CAG-------AGACCTAGAAA----------------------------T----------------------TGGGTTTATTTATCAAATATCTTCGTAAAAAATAGAATGTTAGATATGTATATTTAATCTGAAAAATGCCTATGCTTCCATGTCCAGGCACCATAATTGC---------ATTTTAAAAAT--------CTATGTTTC-----------------------------------------------------------------------------------------T-AT------AAAATAGGAATCATT--------------CTTTTGGTTTTATGA
droEre2	scaffold_4770:3878435-3878752 +		ATAGAG-TATTTACATAAGTATATACCGGATTAGTATCTCTAGCTAATTCGCATGA----------------------------------------------------------------------------------------------------------------------------------------------AACTATGAAAGCGACAGTTGAGAATACTTACTCATTA-ATTAATCAGA----TTTGAATTTGTACCACGCCCACAAAATGTTTGCATTTTGTTGAATTTACGACTGGCTAGGTAAGGGGTGTCTGCTAGTCGAGGAACTTTAAAAGAC-----------------CGCTCTCTCTCTTGCTATATCTAAACTAC-------------------------TAAAAGTGAA---------------------T-----------------------------------------------------------------------------------------------------------------------TATATTGTTTCATAAAT-------------------------------------------------------------------------------------------------TTATTTCTTCCAGGGCACAAGAGTGGGGACCGTTCAAGCTGAAAGGCAGGACTGGGTCTATGA
droYak3	3R:125292-125528 +		GTACATGTATGTATGTATGTATATTCTTGATCAGGATCAATAACCGAGTCAATCTGGCCATGTCCGCCT----GTCTGTCCGTCC------------GTATGAATTTATATTTATTTTCTTCTTAGATTAAAATAAAGAGCCAGCTGTCTGTCCGTCTTTCTATCCGTATGAACGTC----GAGATC------TCAGGAACTACAAAAG--------------------------CAAG-----------------------------------AAAGTTGAGATTAA----------------------------------------------------------G--------CATC----------------------------------CAG-------GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAGACGCAGCGCAGGTTTGTCGA
droEug1	scf7180000409760:570230-570337 +		TTAGGT---------T-TTTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTT---------------TAAACCCAATT-----AAGATTA-----------------TA---------------------------------------------------------------------------------------------------------------------AAACTTATTG-------------------------------------------------------------------------------------------------------------TTTTTCCAGGGAGCAAGAGTTGGCACCGTCCAAGCTGAGAGGCAAGATTGGGTCTATGA
droBia1	scf7180000301423:24766-25016 +		ATAAAG---------TATATATATTCTTGATCAGCGTCACTAGACGAGTTGATTTAGACATGTCCGTCT----GTCCGGCAGTCT------------ATCCGTC-------------------------------------------------CGTCTGTCCGTTCGTTTCTACGCAAACTAGTCTCTCAGTT----------TTAAAG--------------------------CCAT-----------------------------------CGCGCTGAAACTTT------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTCTATTGCAGGTAGTATATAAGTCGGAACCAGCCCGATCGGACAACTATATCTTATAGCTCCCATGGAACTATCGG-------------GGAAAAAATTAAAAATAATTATATAT
droTak1	scf7180000415135:147222-147449 -		ATAAAG---------TATATATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCT----GTCCGTCTGTCCGTCTGTCCGTCTGTCCGTC-------------------------------------------------CGTCTGTCCGTCCGTTTCTACGAAAACTAGTCTCTCAGTT----------TTAAAG--------------------------CTAT-----------------------------------CGGGATGAAACTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAAAA-------------------------------------GTCTTTTTTCTATTGCAGGTA-----------------------------------------------------GTATATAATTCGGAACCGACTGGATCGGACAA----CTATATCTTATAG
droEle1	scf7180000491104:620502-620664 -		ATAAAT---------CACAAATATTCCTAAACTTTTTTTACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--TACAATTGG------------------------AATT--------------------------------------------------------------------------------T----------------------------------ACG-------AGTCCTTGAAT----------------------------TCAC---ATACTTTAA-----------------------------------------------------------TTT-----------------------------------------------------------------------------------TATTTAAATGAAGCTCATAACTT------------------------------------------------------------TTTTTCCAGGGCACAAGAGTTGGTTCCGTTCAAGCTGAGAGGCAGGATTGGGTCTACGA
droRho1	scf7180000768569:10733-10945 -		ATAAAG---------TATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCT----GTCCGTCTGTCT------------GT-----------------------------------------------------------------CCGTATGAACGCT----GAGATC------TCGGAAACTATAAAAG--------------------------CTAG-----------------------------------AAGATTGGCATTTT----------------------------------------------------------G--------CATG----------------------------------TAGATTTTAGAAGTTCCTACGCAGCGCAAGTT----------------------------------------------------------------------------------------------------------------------------GAACGCCCACAATCGCTAATATACAATTTTAAAAAT-------------------------------------------------------------------------------------------------TTAAATATTT--------------------------------------------------CGG
droFic1	scf7180000454096:1112951-1113074 -		TGTCTT---------ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------TTTAA--AGT----T-----------------------------TTAAG--------------------------------------------------------------------------------------------------------------------------------T---------------------------TTGAA---CAACTTTTATAATACTTAATCCCACTTAATAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTCAGGGAGCGAGAGTTGGAAACGTTCAAGCAGAGAGACAAGATTGGGTCTATGA
droKik1	scf7180000302706:78604-78813 -		ATAAAG---------TATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCT----GTCCGTCTGTCT------------G---------------------------------------------------------------------TTTCTAAGCAAACTAGTCCCTCAGTT----------TTAAAG--------------------------CTAT-----------------------------------CTGAATGAAACTTT----------------------------------------------------------G--------CATTT-----CTTCCTTTCTTGTTAATTTTAA----TT---------------TTAATA---------------------------TAAAAAATC---------------------------------------------------------------------------------------------------------------------AGATTTTATAATGCAAAA-------------------------------------------------------------------------------------------------TAATATTTTTCTAAGTGAAGGAAT---------------------------------------
droAna3	scaffold_12935:63112-63274 -		ATAAAG---------TATATATATTCTTGATCAGGATCACCTCCCGAGTCGATATAAGCATGTCCGTCT----ACCCGTCTGTCT------------GC---------------------------------------------------------------------CATAACTTT----GGTGTT---------------TTTTAAG--------------------------TTAG-----------------------------------AAGGATGGGAGTTT----------------------------------------------------------C--------AATGG-----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTCTTTTGGCAAAATAATTC------------------GATATGCCAAATTTCATAA
droBip1	scf7180000395966:16929-17098 +		ATAAAG---------TATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCAT--CCGTCCGTCCGTCTGTCTGTCT---------------------------------------------------------------------------------GTTTCTACGCGAACCAGTCTCTCAGTT----------T-------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAAACT-----------------------------------------------------CTATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TTTTTT-----TAGTAT-------------------------------------TTTTGTA-----------------------CCAAAATAATACGACATGCCAAATTTCATAA
dp5	2:28143134-28143320 -		ATAAAG---------TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCT----GTCCGTCTGTCC------------GTCCGTC-------------------------------------------------C------------GTTT------------TGTAT------TCA------TTTTATG--------------------------TTAT--TTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAATATAAAATAT---TATCACAGACACAATGTTAT----------------------------------------------------------------TTTT-------------------------------------------------T------------------------------------------------------------TTTTTTTAGTATTTAAAAGTTTGT---------------------ATTTGATTACAGAA
droPer2	scaffold_0:9582297-9582463 -		ATAAAG---------TATATATATTCTTGATCAGAATAAATAGCCGAGTCGATTGAGCCCTGTCTGTCT----GAACGTCCGTCC---------------------------------------------------------------------------------CTATGATCGCC----TAGTGC------TCAAAGACTATAAGAG--------------------------CTAG-----------------------------------AGCAACGAC-------------------------------------------------------------------GTTTGTATTCAAAC---TTCTGTAATGTCACTAT---TACACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTCAAAAA
droWil2	scf2_1100000001031:819-961 +		ACAAAG---------TATATATATTCTTGATCAGGATCAAAAACCGAGACGATCTAGCCATGTCCGTCT----GTCCGTCCGTCC------------GTCCGTC-------------------------------------------------CG--------TCCGTATGAACACC----TAGATC------ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAATGAAATTTTCA
droVir3	scaffold_13052:759813-759968 -		ATAAAG---------TATATATATTCTTGATCAGCATTAATAGCCGAGTTGATCTAGCCATGTCCGTCT----GTTTGTCTGTTT------------GT---------------------------------------------------------------------CTGTGCGCG----TCTGCT------TCGAATTCTATCA-------------------------------AC-----------------------------------AACATTGCA-------------------------------------------------------------------ATTGCGATTGTATTGTTTTCTGCGTTGCTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA----------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTT
droMoj3	scaffold_6540:7900145-7900352 -		-TAAAG---------TATAAATATTCTCGATAAGGGCGACGAGCTGAATCGATATAACCCTGTCCGTCT----GTCAGTCCCTTC---------------------------------------------------------------------------------ATATGAACGCC----TAGATC------TTAGAAGTTATTAGAG--------------------------CTAG-----------------------------------AGACTTGCAATTTC----------------------------------------------------------G--------CATA----------------------------------CGTACTCGTGCATACCATACGCAGTAAAAGTTTATCTTATTTTTTCGATAACTCAT-----------------------------------------------------------------------------------------------------------------------------------CCGAT-------------------------------------------------------------------------------------------------TTATTTTTTATCGAG-------------------------------------------AATAA
droGri2	scaffold_15126:4775288-4775371 -		ATAAAG---------TATATATATTCTTGATCAGGGTCAACAGCCGAGTCGATATAGTCATGTCCGTCT----GTCCGTCCGTCT------------GT-----------------------------------------------------------------CTGTATGAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ATAAAG---------TATAAGTATTCCCGATAAGGATTACTAGCCGAGTGGATTTATC--TGTCCGCCT----TTCTGTCCGTCC---------------------------------------------------------------------------------GTATAAACTTC----GTGATT------A---------TATCAT--------------------------TTAT-----------------------------------AACATTGAA-------------------------------------------------------------------ATTCCCATTTTAACGCCCACTGTTTTGTTATTTT-TTTCTATT---------------TATACGCAAAA-----AAGGTTG-----------------TT---------------------------------------------------------------------------------------------------------------------ATATTTAATTTTATAAAT-------------------------------------------------------------------------------------------------TTATTTCTTCCAGGGCACAAGAGTTGGAAACGTTCAAGCTGAAAGGCAGGACTGGGTTTATGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTGAAAGGCAGGACTGG........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

ATAAAG---------TAGAAGTATTCCCGATAAGGATCACTAGCCGAGTGGATTTATC--TGTCCGCCT----TTCTGTCCGTCC---------------------------------------------------------------------------------GTATAAACTTC----GTGATT------T--------ATTA------------------------------AAAAA--GGT----A-----------------------------GAAAGTT------------------------------------CTACTCGTAGTTGTTTAAAACATTGATATTCCCATTTTAACGCCCACTGTTTTGTTATTTTTTTTCTATT---------------GATACGCAAAA-----AAGGTTA-----------------TG---------------------------------------------------------------------------------------------------------------------ATATTTAATTTTATAAAT-------------------------------------------------------------------------------------------------TTATTTCTTTCAGGGCACAAGAGTTGGAAACGTTCAAGCTGAAAGGCAGGACTGGGTTTATGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

A----------------------TTCGTGATAAGGATCACTAGCCGAGTAGATCTGGCTATGTCAGTCC----GTCTGTATGAAC-----------------------------------------------------------------------------------------GTA----TCGATC------TCAGGAACTATAGAAT--------------------------ATAG-----------------------------------AATA--------------------------------------------------------------------------------C----------------------------------CAG-------AGACCTAGAAA----------------------------T----------------------TGGGTTTATTTATCAAATATCTTCGTAAAAAATAGAATGTTAGATATGTATATTTAATCTGAAAAATGCCTATGCTTCCATGTCCAGGCACCATAATTGC---------ATTTTAAAAAT--------CTATGTTTC-----------------------------------------------------------------------------------------T-AT------AAAATAGGAATCATT--------------CTTTTGGTTTTATGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTGAAAAATGCCTATGCTTCCA........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AA----------------------------T----------------------TGGGTTTATTTATCAAAT......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TA----TCGATC------TCAGGAACTATAGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-AT------AAAATAGGAATCATT--------------CTTTTGGTTT.....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTC-----------------------------------------------------------------------------------------T-AT------AAAATAGGAA..................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAAAATGCCTATGCTTCCATA......................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TCGATC------TCAGGAACTATAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAAA----------------------------T----------------------TGGGTTTAGC..............................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATAGAG-TATTTACATAAGTATATACCGGATTAGTATCTCTAGCTAATTCGCATGA----------------------------------------------------------------------------------------------------------------------------------------------AACTATGAAAGCGACAGTTGAGAATACTTACTCATTA-ATTAATCAGA----TTTGAATTTGTACCACGCCCACAAAATGTTTGCATTTTGTTGAATTTACGACTGGCTAGGTAAGGGGTGTCTGCTAGTCGAGGAACTTTAAAAGAC-----------------CGCTCTCTCTCTTGCTATATCTAAACTAC-------------------------TAAAAGTGAA---------------------T-----------------------------------------------------------------------------------------------------------------------TATATTGTTTCATAAAT-------------------------------------------------------------------------------------------------TTATTTCTTCCAGGGCACAAGAGTGGGGACCGTTCAAGCTGAAAGGCAGGACTGGGTCTATGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

GTACATGTATGTATGTATGTATATTCTTGATCAGGATCAATAACCGAGTCAATCTGGCCATGTCCGCCT----GTCTGTCCGTCC------------GTATGAATTTATATTTATTTTCTTCTTAGATTAAAATAAAGAGCCAGCTGTCTGTCCGTCTTTCTATCCGTATGAACGTC----GAGATC------TCAGGAACTACAAAAG--------------------------CAAG-----------------------------------AAAGTTGAGATTAA----------------------------------------------------------G--------CATC----------------------------------CAG-------GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAGACGCAGCGCAGGTTTGTCGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................AA----------------------------------------------------------G--------CATC----------------------------------CAG-------GGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAGAC..................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TACAAAAG--------------------------CAAG-----------------------------------AAAGTTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAAAAG--------------------------CAAG-----------------------------------AAAGTTGAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAAAAG--------------------------CAAG-----------------------------------AAAGTTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ACAAAAG--------------------------CAAG-----------------------------------AAAGTTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CTACAAAAG--------------------------CAAG-----------------------------------AAAGTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACGCAGCGCAGGTTTGTC..	21	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................AGATC------TCAGGAACTACAAAAG--------------------------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAAG--------------------------CAAG-----------------------------------AAAGTTGAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCAGCGCAGGTTTGT...	19	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCAGCGCAGGTTTGT...	18	19	0.05	1	0	0	0	0	1	0	0	0	0	0	0
...................TATATTCTTGATCAGGATCAATAACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAAAAG--------------------------CAAG-----------------------------------AAAGTTGAGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
....................ATATTCTTGATCAGGATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................TTCTTGATCAGGATCAATAACCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

TTAGGT---------T-TTTATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTT---------------TAAACCCAATT-----AAGATTA-----------------TA---------------------------------------------------------------------------------------------------------------------AAACTTATTG-------------------------------------------------------------------------------------------------------------TTTTTCCAGGGAGCAAGAGTTGGCACCGTCCAAGCTGAGAGGCAAGATTGGGTCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATAAAG---------TATATATATTCTTGATCAGCGTCACTAGACGAGTTGATTTAGACATGTCCGTCT----GTCCGGCAGTCT------------ATCCGTC-------------------------------------------------CGTCTGTCCGTTCGTTTCTACGCAAACTAGTCTCTCAGTT----------TTAAAG--------------------------CCAT-----------------------------------CGCGCTGAAACTTT------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTCTATTGCAGGTAGTATATAAGTCGGAACCAGCCCGATCGGACAACTATATCTTATAGCTCCCATGGAACTATCGG-------------GGAAAAAATTAAAAATAATTATATAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATAAAG---------TATATATATTCTTGATCAGCATCACTAGACGAGTCGATCTAGCCATGTCCGTCT----GTCCGTCTGTCCGTCTGTCCGTCTGTCCGTC-------------------------------------------------CGTCTGTCCGTCCGTTTCTACGAAAACTAGTCTCTCAGTT----------TTAAAG--------------------------CTAT-----------------------------------CGGGATGAAACTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAAAA-------------------------------------GTCTTTTTTCTATTGCAGGTA-----------------------------------------------------GTATATAATTCGGAACCGACTGGATCGGACAA----CTATATCTTATAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATAAAT---------CACAAATATTCCTAAACTTTTTTTACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT--TACAATTGG------------------------AATT--------------------------------------------------------------------------------T----------------------------------ACG-------AGTCCTTGAAT----------------------------TCAC---ATACTTTAA-----------------------------------------------------------TTT-----------------------------------------------------------------------------------TATTTAAATGAAGCTCATAACTT------------------------------------------------------------TTTTTCCAGGGCACAAGAGTTGGTTCCGTTCAAGCTGAGAGGCAGGATTGGGTCTACGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATAAAG---------TATATATATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCT----GTCCGTCTGTCT------------GT-----------------------------------------------------------------CCGTATGAACGCT----GAGATC------TCGGAAACTATAAAAG--------------------------CTAG-----------------------------------AAGATTGGCATTTT----------------------------------------------------------G--------CATG----------------------------------TAGATTTTAGAAGTTCCTACGCAGCGCAAGTT----------------------------------------------------------------------------------------------------------------------------GAACGCCCACAATCGCTAATATACAATTTTAAAAAT-------------------------------------------------------------------------------------------------TTAAATATTT--------------------------------------------------CGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTCTT---------ATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------TTTAA--AGT----T-----------------------------TTAAG--------------------------------------------------------------------------------------------------------------------------------T---------------------------TTGAA---CAACTTTTATAATACTTAATCCCACTTAATAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTTCAGGGAGCGAGAGTTGGAAACGTTCAAGCAGAGAGACAAGATTGGGTCTATGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATAAAG---------TATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCT----GTCCGTCTGTCT------------G---------------------------------------------------------------------TTTCTAAGCAAACTAGTCCCTCAGTT----------TTAAAG--------------------------CTAT-----------------------------------CTGAATGAAACTTT----------------------------------------------------------G--------CATTT-----CTTCCTTTCTTGTTAATTTTAA----TT---------------TTAATA---------------------------TAAAAAATC---------------------------------------------------------------------------------------------------------------------AGATTTTATAATGCAAAA-------------------------------------------------------------------------------------------------TAATATTTTTCTAAGTGAAGGAAT---------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATAAAG---------TATATATATTCTTGATCAGGATCACCTCCCGAGTCGATATAAGCATGTCCGTCT----ACCCGTCTGTCT------------GC---------------------------------------------------------------------CATAACTTT----GGTGTT---------------TTTTAAG--------------------------TTAG-----------------------------------AAGGATGGGAGTTT----------------------------------------------------------C--------AATGG-----AT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTCTTTTGGCAAAATAATTC------------------GATATGCCAAATTTCATAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................TCCGTCT----ACCCGTCTGTCT------------GC---------------------------------------------------------------------CATAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..........................................................................CCCGTCTGTCT------------GC---------------------------------------------------------------------CATAACTTT----GGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
................................................TCGATATAAGCATGTCCGTCT----ACCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	2	1	0	0	0	0
....................................................................T----ACCCGTCTGTCT------------GC---------------------------------------------------------------------CATAACTTT----GG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................GTCTGTCT------------GC---------------------------------------------------------------------CATAACTTT----GGTGTT---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...............................................GTCGATATAAGCATGTCCGTCT----ACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.67	2	2	0	0	0	0	0
......................................................TAAGCATGTCCGTCT----ACCCGTCTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.67	2	1	1	0	0	0	0
...............................................GTCGATATAAGCATGTCCGTCT----ACCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.67	2	2	0	0	0	0	0
................................................TCGATATAAGCATGTCCGTCT----ACCCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
................................................TCGATATAAGCATGTCCGTCT----ACCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0
.......................TTCTTGATCAGGATCACCTCCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.21	3	3	0	0	0	0	0
....................ATATTCTTGATCAGGATCACCTCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0
.....................................CACCTCCCGAGTCGATATAAGCATGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
.......................TTCTTGATCAGGATCACCTCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
.....................TATTCTTGATCAGGATCACCTCCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	1	0	0	0	0	0
.......................TTCTTGATCAGGATCACCTCCCGAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	1	0	0	0	0	0
.......................TTCTTGATCAGGATCACCTCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	1	0	0	0	0	0
................................AGGATCACCTCCCGAGTCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	1
..........................TTGATCAGGATCACCTCCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	17	0.06	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCTTTTGGCAAAATAATTC------------------GATATG.............	28	20	0.05	1	1	0	0	0	0	0
...................TATATTCTTGATCAGGATCACCTCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................GTT---------------TTTTAAG--------------------------TTAG-----------------------------------AAGGATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................ATTCTTGATCAGGATCACCTCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................TT---------------TTTTAAG--------------------------TTAG-----------------------------------AAGGATGGGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
..................ATATATTCTTGATCAGGATCACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

ATAAAG---------TATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCAT--CCGTCCGTCCGTCTGTCTGTCT---------------------------------------------------------------------------------GTTTCTACGCGAACCAGTCTCTCAGTT----------T-------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAAACT-----------------------------------------------------CTATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----TTTTTT-----TAGTAT-------------------------------------TTTTGTA-----------------------CCAAAATAATACGACATGCCAAATTTCATAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

ATAAAG---------TATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCT----GTCCGTCTGTCC------------GTCCGTC-------------------------------------------------C------------GTTT------------TGTAT------TCA------TTTTATG--------------------------TTAT--TTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAATATAAAATAT---TATCACAGACACAATGTTAT----------------------------------------------------------------TTTT-------------------------------------------------T------------------------------------------------------------TTTTTTTAGTATTTAAAAGTTTGT---------------------ATTTGATTACAGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................TTGATCAGCATCAATAGCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.35	7	0	0	0	0	7	0	0	0	0	0
....................................................................T----GTCCGTCTGTCC------------GTCCGTC-------------------------------------------------C------------GTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0
..........................TTGATCAGCATCAATAGCCGAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	5	0	0	0
.........................................................................GTCCGTCTGTCC------------GTCCGTC-------------------------------------------------C------------GTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................TCCGTCTGTCC------------GTCCGTC-------------------------------------------------C------------GTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................................TGAGCCATGTCTGTCT----GTCCGTCTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	4	0
.............................................GAGTCGATTGAGCCATGTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0
.....................TATTCTTGATCAGCATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................TGAGCCATGTCTGTCT----GTCCGTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	3	0	0	0	0	0	0	0
.....................................................TGAGCCATGTCTGTCT----GTCCGTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0
..........................TTGATCAGCATCAATAGCCGAGTCGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	3	0	0	0	0	0	0	0
................ATATATATTCTTGATCAGCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.............................................GAGTCGATTGAGCCATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................CCGAGTCGATTGAGCCATGTCTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0	0	0	0
..................................................................TCT----GTCCGTCTGTCC------------GTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0
......................................................GAGCCATGTCTGTCT----GTCCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..........................................GCCGAGTCGATTGAGCCATGTCTGTCT----G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................AGCCATGTCTGTCT----GTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

ATAAAG---------TATATATATTCTTGATCAGAATAAATAGCCGAGTCGATTGAGCCCTGTCTGTCT----GAACGTCCGTCC---------------------------------------------------------------------------------CTATGATCGCC----TAGTGC------TCAAAGACTATAAGAG--------------------------CTAG-----------------------------------AGCAACGAC-------------------------------------------------------------------GTTTGTATTCAAAC---TTCTGTAATGTCACTAT---TACACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTCAAAAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................AAAGACTATAAGAG--------------------------CTAG-----------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.25	5	0	5	0	0	0	0

droWil2

ACAAAG---------TATATATATTCTTGATCAGGATCAAAAACCGAGACGATCTAGCCATGTCCGTCT----GTCCGTCCGTCC------------GTCCGTC-------------------------------------------------CG--------TCCGTATGAACACC----TAGATC------ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAATGAAATTTTCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................TGAACACC----TAGATC------ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCAT........................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...................................ATCAAAAACCGAGACGATCTAGCCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...................................................................................................CCGTC-------------------------------------------------CG--------TCCGTATGAACACC----TAGATC------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAA...........	27	11	0.36	4	0	3	0	1	0
.........................................AACCGAGACGATCTAGCCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0
..................................................................................................................................................................................................TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGACTCATAT...........................................................................................................................................	25	9	0.33	3	0	3	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAA...........	25	11	0.27	3	0	2	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAATGAAATTT...	26	5	0.20	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAATGAAA......	27	5	0.20	1	0	1	0	0	0
.......................................................AGCCATGTCCGTCT----GTCCGTCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	3	0
.........................................................................................................................................................................................TC------ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGACTCATA............................................................................................................................................	27	9	0.11	1	0	1	0	0	0
...................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGACTCATAT...........................................................................................................................................	24	9	0.11	1	0	1	0	0	0
.........................................................................................................................................................................................TC------ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGACTCATAT...........................................................................................................................................	28	9	0.11	1	0	1	0	0	0
.................................................................................................................................................................................................ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGACTCATAT...........................................................................................................................................	26	9	0.11	1	0	0	0	1	0
.........................................................................................................................................................................................TC------ATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAATCATTTCTGAC.................................................................................................................................................	22	10	0.10	1	0	1	0	0	0
.................................................CGATCTAGCCATGTCCGTCT----GTCCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAA...........	26	11	0.09	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CG.............	21	11	0.09	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGA............	26	11	0.09	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAA...........	24	11	0.09	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAAT..........	23	13	0.08	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCTGACTCATATT---------------------------------------------------------------------------------------------------------------------------CGAA...........	21	13	0.08	1	0	1	0	0	0
.................................................................GTCT----GTCCGTCCGTCC------------GTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
...................................................................................................CCGTC-------------------------------------------------CG--------TCCGTATGAACACC----TA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0
......................................................................................................TC-------------------------------------------------CG--------TCCGTATGAACACC----TAGATC------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.................................................CGATCTAGCCATGTCCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
...................................................................................CC------------GTCCGTC-------------------------------------------------CG--------TCCGTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
............................................................TGTCCGTCT----GTCCGTCCGTCC------------GT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0
......................................................TAGCCATGTCCGTCT----GTCCGTCCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0

droVir3

ATAAAG---------TATATATATTCTTGATCAGCATTAATAGCCGAGTTGATCTAGCCATGTCCGTCT----GTTTGTCTGTTT------------GT---------------------------------------------------------------------CTGTGCGCG----TCTGCT------TCGAATTCTATCA-------------------------------AC-----------------------------------AACATTGCA-------------------------------------------------------------------ATTGCGATTGTATTGTTTTCTGCGTTGCTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA----------------------------------------------------------------------------------------------------------------------------------------------------------TTCATTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................TATCA-------------------------------AC-----------------------------------AACATTGCA-------------------------------------------------------------------ATTGCGATTG.................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAGCCGAGTTGATCTAGCCATGTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CCATGTCCGTCT----GTTTGTCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................GAGTTGATCTAGCCATGTCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TATATTCTTGATCAGCATTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATATTCTTGATCAGCATTAATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TATATTCTTGATCAGCATTAATAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GCCGAGTTGATCTAGCCATGTCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CGAGTTGATCTAGCCATGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCCGAGTTGATCTAGCCATGTCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TAGCCGAGTTGATCTAGCCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CG----TCTGCT------TCGAATTCTATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................CGAGTTGATCTAGCCATGTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................AATAGCCGAGTTGATCTAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGATCTAGCCATGTCCGTCT----GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................CCGAGTTGATCTAGCCATGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................TAGCCATGTCCGTCT----GTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................ATATTCTTGATCAGCATTAATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ATAGCCGAGTTGATCTAGCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AGTTGATCTAGCCATGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GATCTAGCCATGTCCGTCT----GTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TCTTGATCAGCATTAATAGCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AG---------TATATATATTCTTGATCAGCATTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

-TAAAG---------TATAAATATTCTCGATAAGGGCGACGAGCTGAATCGATATAACCCTGTCCGTCT----GTCAGTCCCTTC---------------------------------------------------------------------------------ATATGAACGCC----TAGATC------TTAGAAGTTATTAGAG--------------------------CTAG-----------------------------------AGACTTGCAATTTC----------------------------------------------------------G--------CATA----------------------------------CGTACTCGTGCATACCATACGCAGTAAAAGTTTATCTTATTTTTTCGATAACTCAT-----------------------------------------------------------------------------------------------------------------------------------CCGAT-------------------------------------------------------------------------------------------------TTATTTTTTATCGAG-------------------------------------------AATAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATAAAG---------TATATATATTCTTGATCAGGGTCAACAGCCGAGTCGATATAGTCATGTCCGTCT----GTCCGTCCGTCT------------GT-----------------------------------------------------------------CTGTATGAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_16585

3r:3527179-3527328 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads