ID:

dsi_16578

 Coordinate:

3l:15674111-15674260 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_15674261_15674373_+]; exon [3l_15674261_15674373_+]; intron [3l_15665833_15674260_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTCAATTTGGAATCACAATGGGGCAGTCTCATCCAGAAGATGAGTAATTTACAATGGATAGACGTTTGTAATTTGTGAGAAATTTGAGACTTGAGAAAATATGTAGTTTATTTTGTTCTTAATTGATGAAAATCATAGACTTTAAAAAATAATTCCATTCCGCTTACTTAATCGAATACTCATTTTGCTATTTTACAGGCGTGCATAGACGACAATCTGGACATGGTGGAGTTTCTGGTGGAACGAGG
**************************************************((......(((((.............(((((..((((((....((((.....(((....(((((((.........((((....))))..........)))))))...)))....)))).....)))))).)))))....)))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................................................................GTGCATAGACGACAATCTGGACATG....................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GACGACAATCTGGACATGGGG.................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...................ATGGGGCAGTCTCATCCAGAAGATGA............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................TGGTGTAGTTTCTAGTGGAAC.... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATAGACGACAATCTGGAC.......................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................CATGGTGGAGTTTCTGGTG........ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTCCGCGGACTTAATGGAATA...................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................TTCCGCGGACTTAATGGAAT....................................................................... 20 3 5 0.40 2 0 0 2 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCTGGACAAGGCGGAGTTT.............. 20 3 10 0.20 2 0 0 0 0 0 0 2 0 0
..................AATGGGGCGGTCTCCTCC...................................................................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CTCTGGACGTGGTGGATTTT.............. 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................TGATGAATACCATAGA............................................................................................................. 16 2 20 0.10 2 0 0 2 0 0 0 0 0 0
...................................................................................ATTTGAGCCTTGAGA........................................................................................................................................................ 15 1 15 0.07 1 0 0 0 0 0 0 0 1 0
............................................................................GTTAGAAATTTGAGA............................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................ATCCTAGACTTTGAAAAA................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................TCCTAGACTTTGAAAAA................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
...............................................................ACGTTTGGAATTTGT............................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GAAAGTTAAACCTTAGTGTTACCCCGTCAGAGTAGGTCTTCTACTCATTAAATGTTACCTATCTGCAAACATTAAACACTCTTTAAACTCTGAACTCTTTTATACATCAAATAAAACAAGAATTAACTACTTTTAGTATCTGAAATTTTTTATTAAGGTAAGGCGAATGAATTAGCTTATGAGTAAAACGATAAAATGTCCGCACGTATCTGCTGTTAGACCTGTACCACCTCAAAGACCACCTTGCTCC
**************************************************((......(((((.............(((((..((((((....((((.....(((....(((((((.........((((....))))..........)))))))...)))....)))).....)))))).)))))....)))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................................AAATTTTTTATTAGGCTA.......................................................................................... 18 2 20 0.60 12 9 1 2 0
......................................................................................................................................AGTCTCTGAAATTTTT.................................................................................................... 16 1 4 0.50 2 2 0 0 0
.........................................................................................................................................................................AATTAGCAGATGAGTAA................................................................ 17 2 18 0.06 1 0 1 0 0
.................................................................................................................................................TTTTTTATTAGGGTAA......................................................................................... 16 1 20 0.05 1 0 0 0 1

Generated: 04/23/2015 at 04:49 PM