dsi_16564

intron [x_17100920_17103459_-]; exon [x_17100876_17100919_-]; CDS [x_17100876_17100919_-]; exon [x_17100669_17100810_-]; CDS [x_17100669_17100810_-]; intron [x_17100811_17100875_-]

------############################################-----------------------------------------------------------------################################################## ACACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTACAATCGAAATAATCGACACGAATGCGATAACTAATCGATTACATTCGAATACCTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA ************************************************....(((...(((((.(((((((..................)))))))..))))).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	M024 male body	M053 female body	M023 head	SRR902008 ovaries	SRR902009 testis
...................ATGCCCAAGTTAACGATCTTCGCG..........................................................................................................................	24	0	1	8.00	8	7	1	0	0	0	0	0
..............................AACGATCTTCGCGGCAAGTTC..................................................................................................................	21	1	1	8.00	8	8	0	0	0	0	0	0
..............................AACGATCTTCGCGGCAAGTT...................................................................................................................	20	0	1	6.00	6	6	0	0	0	0	0	0
.............................TAACGATCTTCGCGGCAAGTT...................................................................................................................	21	0	1	4.00	4	1	0	2	1	0	0	0
.......................CCAAGTTAACGATCTTCGCGGC........................................................................................................................	22	0	1	3.00	3	3	0	0	0	0	0	0
.............................TAACGATCTTCGCGGCAAGTTC..................................................................................................................	22	1	1	3.00	3	3	0	0	0	0	0	0
..........................AGTTAACGATCTTCGCGGCAAGTT...................................................................................................................	24	0	1	2.00	2	1	0	1	0	0	0	0
...........................GTTAACGATCTTCGCGGC........................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0
..........................AGTTAACGATCTTCGCGGC........................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0	0
...................ATGCCCAAGTTAACGATCTTCGCGGC........................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0
...........................GTTAACGATCTTCGCGGCAAGTT...................................................................................................................	23	0	1	2.00	2	1	0	1	0	0	0	0
......ATCAACGATCTCAATCCCCAAGTT.......................................................................................................................................	24	1	1	2.00	2	2	0	0	0	0	0	0
....................TGCCCAAGTTAACGATCTTCGC...........................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0	0
..................AATGCCCAAGTTAACGATCTTCGC...........................................................................................................................	24	0	1	2.00	2	2	0	0	0	0	0	0
.................CAATGCCCAAGTTAACGATCTTCGC...........................................................................................................................	25	0	1	2.00	2	2	0	0	0	0	0	0
......................CCCAAGTTAACGATCTTCGC...........................................................................................................................	20	0	1	2.00	2	2	0	0	0	0	0	0
................................................................................................................................CTGAAGAAGGTCTCCAAATACGA..............	23	0	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................................GTCAAGCCAGCCCTGAAGAAGGT..........................	23	0	1	1.00	1	0	1	0	0	0	0	0
........................CAAGTTAACGATCTTCGCGGC........................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
...........................GTTAACGATCTTCGCGGCAAGTTC..................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................AGCCAGCCCTGAAGAAGGTC.........................	20	0	1	1.00	1	0	1	0	0	0	0	0
.....................ACCCAAGTTAACGATCTTCGCGGC........................................................................................................................	24	1	1	1.00	1	1	0	0	0	0	0	0
................................CGATCTTCGCGGCAAGTT...................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................CGTCAAGCCAGCCCTGAAGAAGGT..........................	24	0	1	1.00	1	0	1	0	0	0	0	0
...................ATGCCCAAGTTAACGATCTTCGCGGCA.......................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
.......TCAACGATCTCAATGCCCAAGT........................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
.......................CCAAGTTAACGATCTTCGCGGCA.......................................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
........CAACGATCTCAATGCCCAAGT........................................................................................................................................	21	0	1	1.00	1	0	0	0	1	0	0	0
...................ATGCCCAAGTTAACGATCTTCGC...........................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................CAAGCCAGCCCTGAAGAAGGT..........................	21	0	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................AGCCCTGAAGAAGGTCTCCAAATACT...............	26	1	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................GCAGAAGGTCTCCAAAAA.................	18	2	7	0.14	1	0	0	0	0	0	1	0
ATACAGTTCGACGATCTCAA.................................................................................................................................................	20	3	9	0.11	1	0	0	0	0	0	0	1

TGTGTCTAGTTGCTAGAGTTACGGGTTCAATTGCTAGAAGCGCCGTTCAACATTCATGTTAGCTTTATTAGCTGTGCTTACGCTATTGATTAGCTAATGTAAGCTTATGGAAATCGCAGTTCGGTCGGGACTTCTTCCAGAGGTTTATGCTTTTGTTTAAGCGGT ************************************************....(((...(((((.(((((((..................)))))))..))))).)))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.GTTGCTAGTTGCTTGAGTTAC...............................................................................................................................................	21	3	2	0.50	1	1	0	0
..............AGCGTTACGGGTTCAGTTGT...................................................................................................................................	20	3	7	0.14	1	0	1	0
.GTGTCTAGTTCCTAG.....................................................................................................................................................	15	1	14	0.07	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:17100761-17100925 -	dsi_16564	AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGACACGA-ATGCGATA---ACTAATCGA----T------------------------------TAC----A--------------------------------------TTCGA------ATACCTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droSec2	scaffold_8:307004-307168 -		AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGGCAGGA-AGGCGATA---ACTAATCGA----T------------------------------TAC----A--------------------------------------TTCGA------ATACCTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
dm3	chrX:18000806-18000970 -		AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TTGAAA-------------------------TAATCGACACGA-ATGCGATA---ACTAATCGA----T------------------------------TGC----A--------------------------------------TTCGA------ATAACTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droEre2	scaffold_4690:8329033-8329197 -		CC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGACCGGA-ATGCGAAA---ACTAATCGA----T------------------------------TGC----A--------------------------------------TTCGA------ATGCCTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droYak3	X:16625124-16625288 -		TC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGACAAGA-ACGCGATA---ACTAATCGA----C------------------------------TGA----A--------------------------------------TTCGA------ATGCTTTTAGTGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droEug1	scf7180000408176:682881-683050 +		CC---TTAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CTA---------------------------------------TCGAAA-------------------------TAATCGTTTGGATATTTGATA---ATTGATCGA----T------------------------------TT-G---T--------------------------------------TTTGC--TTGTAACTATATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droBia1	scf7180000301760:604475-604643 +		CC---GCAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTAT--CAA---------------------------------------TCGAAA-------------------------TAATCGATCGCA-ATGCGATT---ATTAATCGA----T------------------------------T--GTTT-------------------------------------AA----C--TTTCCTTCCTACAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droTak1	scf7180000415843:477701-477869 +		GT---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTAT--TAA---------------------------------------TCGATA-------------------------TAATCGATCGGA-AGCCGATA---ATTGATCGA----T------------------------------T--ATTT-------------------------------------GA----C--TTTTTCCCCTATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droEle1	scf7180000491193:206243-206406 -		CC---GCAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAATTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGATAGGAAAATCGATT---ATTAATCGA----C------------------------------T--GTT------------------------------------------------TTGTTACCCATAGCGTCAAGCCAGCCTTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droRho1	scf7180000779986:517099-517267 +		CC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGATCGAA-ATTCGATT---ATAAATCGA----C------------------------------T--GTTT-------------------------------------C-----CTTTTTGCTACCTATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droFic1	scf7180000453872:356726-356894 +		CCACTACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGTGGCAAGTTGTAAGTA---CAC---------------------------------------TCGCAC-------------------------TTATCGCTCGGA-TATCGGTT---ATTAATCGA----C------------------------------C--CTTTC--------------------------------------T-------TTGTTTCTTATAGCGTCAAGCCAGCCTTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droKik1	scf7180000302696:1701918-1702087 -		AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAC---------------------------------------ACCAGC-------------------------AATTCGATATGT-CGGCGATT---ATTAATCGA----A------------------------------T--TTTC-------------------------------------TACC--C--TTTCAAACCTGCAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droAna3	scaffold_13335:1624904-1625075 +		AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATCTCAA---------------------------------------TAAAAAGAGCT--------------------TAATAGATTTAA-AATTGATA---ACTAATCGA----T------------------------------T--GTTAT--------------------------------------TTCGA------TT---AACAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droBip1	scf7180000395454:39920-40088 -		AT---ACAGATCAACGATCTCAACGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATCTCAA---------------------------------------AC------ATATATATAGATG---------ATGATCTA--------TCGATT---ATTAATCGA----T------------------------------T--GTT-A--------------------------------------TTTGT------TT---AACAGCGTCAAGCCAGCCTTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
dp5	XL_group3a:2001113-2001287 +		AT---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATTTTAT---------------------------------------TCCGGAGAATCTACCTCGA-------------GATCGA--------GCGATT---ACTAATTGA----T------------------------------C--AT------------------------------------------TCGA--TTCGATTCTTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droPer2	scaffold_11:2676976-2677150 -		AT---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATTTTAT---------------------------------------TCCGGAGAATCTACCTCGA-------------GATCGA--------GCGATT---ACTAATTGA----T------------------------------C--AT------------------------------------------TCGA--TTCGATTCTTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA
droWil2	scf2_1100000004909:12006497-12006674 -		AA---ATAGATCAACGATCTCAATGCCCAAGTTAATGATCTTCGCGGCAAGTTGTAAGTA---CAC-------------------------------AAATAGAATCGATA---TATGTATATATA---------ATTATCGA----------GATATATA----TTGATAAAA------------------------------T--TT------------------------------------------CCAA------ATTTTTATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATATGAAAACAAATTCGCCA
droVir3	scaffold_12928:1292551-1292610 +		AT---ATAGATCAACGATCTCAATGCTCAAGTTAACGATCTTCGCGGCAAATTGTAAGTA---AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6473:13700192-13700258 -		AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CGA----T------------------------------TCC--------------------------------------------------------ATATATAGCGTTAAGCCAGCCTTGAAGAAGGTGTCCAAATACGAAAACAAATTTGCCA
droGri2	scaffold_15203:8423738-8424016 -		A-----TAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAATTGTGAGTA---CCAATTACCCTTTGCATACCCTTGCAGACACTATGAATACAATGGATA---CTTATCTATATTCATACCTCAAT------------------CAAATA----TTGTCAAATTTGATGTGGCAATATTCAATACTCTGCAAGGGC----ATCCAAATTACTTGAAGCCCCAACTAAATAACTATTTT-----TTTTATCCAACGTACAGCGTTAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTTGCCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGACACGA-ATGCGATA---ACTAATCGA----T------------------------------TAC----A--------------------------------------TTCGA------ATACCTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................ATGCCCAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	7	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................AACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	21	1	8.00	8	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	21	1	4.00	4	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CCAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TAACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................CTGAAGAAGGTCTCCAAATACGA..............	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................GTCAAGCCAGCCCTGAAGAAGGT..........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................CAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGTC.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................CGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CGTCAAGCCAGCCCTGAAGAAGGT..........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CCAAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAAGGT..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................AGCCCTGAAGAAGGTCTCCAAATACT...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGGCAGGA-AGGCGATA---ACTAATCGA----T------------------------------TAC----A--------------------------------------TTCGA------ATACCTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................ATGCCCAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	3	0
....................................GATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAAGGT..........................	21	1	1.00	1	0	0	1	0
........GATCAACGATCTCAATGCCCA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
............................AAGTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...........CAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..........................CCAAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.................................AACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0

dm3

AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TTGAAA-------------------------TAATCGACACGA-ATGCGATA---ACTAATCGA----T------------------------------TGC----A--------------------------------------TTCGA------ATAACTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................GGTCTCCAAATACGAAAACA.........	20	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GCCCTGAAGAAGGTCTCCA.....................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AGATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGAAGAAGGTCTCCAAAT..................	18	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GAAGAAGGTCTCCAAATAC................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................TAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATCTCAATGCCCAAGTTAACGATCT........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGTCT........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAAGGT..........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AACGATCTTCGCGGCATC..............................................................................................................................................................................................................................................................................	18	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GCCCTGAAGAAGGTCTCTT.....................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ATCTTCGCGGCAAGTTCG..........................................................................................................................................................................................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GAAGAAGGTCTCCAAAAG.................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGACCGGA-ATGCGAAA---ACTAATCGA----T------------------------------TGC----A--------------------------------------TTCGA------ATGCCTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................CGTCAAGCCAGCCCTGAAGAAGGT..........................	24	1	5.00	5	0	0	0	2	0	3	0
........GATCAACGATCTCAATGCC......................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCCAGCCCTGAAGAAGGT..........................	18	1	2.00	2	0	0	0	0	0	2	0
........GATCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAAGGT..........................	21	1	2.00	2	0	0	0	0	1	1	0
.................................AACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	1	0	0
...........CAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGT..........................	20	1	2.00	2	0	0	0	0	0	2	0
..............................GTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GAAGAAGGTCTCCAAATACGAAAACA.........	26	1	1.00	1	1	0	0	0	0	0	0
.................................AACGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
........GATCAACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0
........GATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.............ACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
.........ATCAACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.........ATCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
.....................AATGCCCAAGTTAACGATCTTCGCGG..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.............................AGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
........................GCCCAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
........GATCAACGATCTCAATGCCC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.......................TGCCCAAGTTAACGATCTTCGCGG..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...........................CAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
........GATCAACGATCTCAATGCCCAAGTC................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
..........TCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.......................TGCCCAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...........CAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
................................TAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................GCCAGCCCTGAAGAAGGTC.........................	19	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................GTCTCCAAATACGAAAACAAATTCGCC.	27	1	1.00	1	1	0	0	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................AGAAGGTCTCCAAATACGA..............	19	1	1.00	1	1	0	0	0	0	0	0
....................................GATCTTCGCGGCAAGTTCGT.........................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0

droYak3

TC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGACAAGA-ACGCGATA---ACTAATCGA----C------------------------------TGA----A--------------------------------------TTCGA------ATGCTTTTAGTGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................AAGTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	25	1	4.00	4	1	0	0	0	0	0	3	0	0	0	0
.................................AACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGT..........................	19	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
.............................AGTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..............................GTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
................................TAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGTCTCC......................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCCC.....................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................GCCCTGAAGAAGGTCTCCAAATACGAAA............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCCCAAG..................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........ATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................GTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGTCTC.......................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................AACGATCTTCGCGGCAAGC.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCC......................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........ATCAACGATCTCAATGCCCA....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........GATCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................CCAAATACGAAAACAAATTCG...	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........ATCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGTC.........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................GTTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............ACGATCTCAATGCCCAAGTTAACGA...........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................CGATCTTCGCGGCAAGTTT...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..........TCAACGATCTCAATGCCCA....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................C------------------------------TGA----A--------------------------------------TTCGA------ATGCTTTTAGTGTC..............................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................AAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................TAACGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AAATACGAAAACAAATTCGCC.	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

CC---TTAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CTA---------------------------------------TCGAAA-------------------------TAATCGTTTGGATATTTGATA---ATTGATCGA----T------------------------------TT-G---T--------------------------------------TTTGC--TTGTAACTATATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CC---GCAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTAT--CAA---------------------------------------TCGAAA-------------------------TAATCGATCGCA-ATGCGATT---ATTAATCGA----T------------------------------T--GTTT-------------------------------------AA----C--TTTCCTTCCTACAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GT---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTAT--TAA---------------------------------------TCGATA-------------------------TAATCGATCGGA-AGCCGATA---ATTGATCGA----T------------------------------T--ATTT-------------------------------------GA----C--TTTTTCCCCTATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CC---GCAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAATTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGATAGGAAAATCGATT---ATTAATCGA----C------------------------------T--GTT------------------------------------------------TTGTTACCCATAGCGTCAAGCCAGCCTTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAA---------------------------------------TCGAAA-------------------------TAATCGATCGAA-ATTCGATT---ATAAATCGA----C------------------------------T--GTTT-------------------------------------C-----CTTTTTGCTACCTATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCACTACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGTGGCAAGTTGTAAGTA---CAC---------------------------------------TCGCAC-------------------------TTATCGCTCGGA-TATCGGTT---ATTAATCGA----C------------------------------C--CTTTC--------------------------------------T-------TTGTTTCTTATAGCGTCAAGCCAGCCTTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTA---CAC---------------------------------------ACCAGC-------------------------AATTCGATATGT-CGGCGATT---ATTAATCGA----A------------------------------T--TTTC-------------------------------------TACC--C--TTTCAAACCTGCAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AC---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATCTCAA---------------------------------------TAAAAAGAGCT--------------------TAATAGATTTAA-AATTGATA---ACTAATCGA----T------------------------------T--GTTAT--------------------------------------TTCGA------TT---AACAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........GATCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	8	0	0	0	0
........GATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	24	1	7.00	7	1	5	0	0	0	1
........GATCAACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	28	1	6.00	6	0	6	0	0	0	0
..................................ACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	19	1	5.00	5	1	0	0	0	0	4
.............................AGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	20	1	4.00	4	4	0	0	0	0	0
................................TAACGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	3
........GATCAACGATCTCAATGCC......................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	3	0	0	0	0
................................TAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	21	1	3.00	3	1	0	0	0	0	2
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGT..........................	19	1	3.00	3	0	0	3	0	0	0
...........CAACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0
......................ATGCCCAAGTTAACGATCT........................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
......................ATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
...........CAACGATCTCAATGCCCAAGTTAACG............................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	1	0	0	1
...........CAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
........GATCAACGATCTCAATGCCCAAGC.................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
.............................AGTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.................................AACGATCTTCGCGGCAAGTTCGT.........................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0
.........ATCAACGATCTCAATGCCC.....................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
..............................GTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAAGGTC.........................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................AGAAGGTCTCCAAATACGAAAACA.........	24	1	1.00	1	0	0	0	0	0	1
........GATCAACGATCTCAATGCCC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGTCTCCA.....................	25	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................AAGAAGGTCTCCAAATACGAAAA...........	23	1	1.00	1	0	0	0	0	0	1
.....................AATGCCCAAGTTAACGATC.........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
...................................CGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................AATGCCCAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................AAGGTCTCCAAATACGAAAAC..........	21	1	1.00	1	0	0	0	0	0	1
............AACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
................ATCTCAATGCCCAAGTTAACG............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...........CAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................GAAGGTCTCCAAATACGAAAAC..........	22	1	1.00	1	0	1	0	0	0	0
............................AAGTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
.............................AGTTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................GAAGAAGGTCTCCAAATACGAAA............	23	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAA.............................	18	1	1.00	1	0	1	0	0	0	0
.........ATCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.........ATCAACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................AAGGTCTCCAAATACGAAAACAAA.......	24	1	1.00	1	0	0	0	0	0	1
........GATCAACGATCTCAATGCCCA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................CTCAATGCCCAAGTTAACGATC.........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...........CAACGATCTCAATGCCCAAG..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............AACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
...............GATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................TCTCAATGCCCAAGTTAACG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.............................AGTTAACGATCTTCGCGG..................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
............................AAGTTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
................................TAACGATCTTCGCGGCAAGTTCGT.........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................CTCAATGCCCAAGTTAACG............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGTC.........................	20	1	1.00	1	0	0	0	0	1	0
..................CTCAATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..........TCAACGATCTCAATGCCC.....................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.......AGATCAACGATCTCAATGCCC.....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAAGGT..........................	21	1	1.00	1	0	0	1	0	0	0
.............................AGTTAACGATCTTCGCGGCAAG..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........ATCAACGATCTCAATGCCCAA...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................ATCTCAATGCCCAAGTTAACGAT..........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........GATCAACGATCTCAATGCCCAA...................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................ATGCCCAAGTTAACGATCTTC......................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................TCTCAATGCCCAAGTTAACGAT..........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................GAAGGTCTCCAAATACGAA.............	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................GCCAGCCCTGAAGAAGGTCTCC......................	22	1	1.00	1	0	0	0	0	0	1
............AACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................GTCAAGCCAGCCCTGAAGAAGGT..........................	23	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................AAGAAGGTCTCCAAATACGAA.............	21	1	1.00	1	1	0	0	0	0	0
...............................TTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGTCT........................	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................CGTCAAGCCAGCCCTGAAG...............................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGTCTCCA.....................	24	1	1.00	1	1	0	0	0	0	0
.........ATCAACGATCTCAATGCCCAAGTTAACG............................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............CGATCTCAATGCCCAAGTTAACG............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................GAAGGTCTCCAAATACGAAA............	20	1	1.00	1	0	0	0	0	0	1
..........TCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................CTGAAGAAGGTCTCCAAATA.................	20	1	1.00	1	0	0	0	0	1	0
..................CTCAATGCCCAAGTTAACGAT..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
........GATCAACGATCTCAATGC.......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..........TCAACGATCTCAATGCCCAA...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................GATCTTCGCGGCAAGTTCG..........................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	1	0

droBip1

AT---ACAGATCAACGATCTCAACGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATCTCAA---------------------------------------AC------ATATATATAGATG---------ATGATCTA--------TCGATT---ATTAATCGA----T------------------------------T--GTT-A--------------------------------------TTTGT------TT---AACAGCGTCAAGCCAGCCTTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AT---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATTTTAT---------------------------------------TCCGGAGAATCTACCTCGA-------------GATCGA--------GCGATT---ACTAATTGA----T------------------------------C--AT------------------------------------------TCGA--TTCGATTCTTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................AGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	1	0	1	0	1	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................GAAGAAGGTCTCCAAATACGAAAACA.........	26	1	2.00	2	0	0	0	1	0	1	0	0	0	0
..................................ACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	1	0	0	0	0
................................TAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGTC.........................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CTCCAAATACGAAAACAAATT.....	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................AATGCCCAAGTTAACGATCTTCG.....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................GCCCAAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CGTCAAGCCAGCCCTGAAGA..............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GGTCTCCAAATACGAAAACAAATTCGCC.	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................AACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................AATGCCCAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........CAACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TGAAGAAGGTCTCCAAATAC................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................ATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......AGATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GTCTCCAAATACGAAAACA.........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........CAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................TTAACGATCTTCGCGGCAAG..............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................TTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................CCAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GATCTCAATGCCCAAGTTAACGAT..........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................ACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................AACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................TACCTCGA-------------GATCGA--------GCGATT---ACTAATTG.........................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........TCAACGATCTCAATGCCCA....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................ATGCCCAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TCAACGATCTCAATGCCCAAGTTAACG............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................AACGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGT..........................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCCAGCCCTGAAGAAGGTCTC.......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................CTCAATGCCCAAGTTAACGATCTT.......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................ATCTCAATGCCCAAGTTAACGATCTT.......................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AAGAAGGTCTCCAAATACGAA.............	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................AGAAGGTCTCCAAATACGAAAACA.........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCCCA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........CAACGATCTCAATGCCCAAG..................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................AAGAAGGTCTCCAAATACGAAAA...........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

AT---ACAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAGTTGTAAGTATTTTAT---------------------------------------TCCGGAGAATCTACCTCGA-------------GATCGA--------GCGATT---ACTAATTGA----T------------------------------C--AT------------------------------------------TCGA--TTCGATTCTTTTAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................GTTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	23	1	9.00	9	9	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCCAGCCCTGAAGAAGGTC.........................	19	1	2.00	2	0	0	0	0	0	2
...............................TTAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.................................AACGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGTC.........................	21	1	1.00	1	0	1	0	0	0	0
..................................ACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........GATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................AGAAGGTCTCCAAATACGAAAACA.........	24	1	1.00	1	0	1	0	0	0	0
..................CTCAATGCCCAAGTTAACGATCTTC......................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................................TAACGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
............................AAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................TCAATGCCCAAGTTAACGATCT........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................AAGAAGGTCTCCAAATACGAA.............	21	1	1.00	1	0	1	0	0	0	0
...............................TTAACGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................CTCAATGCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGGTCTCCAAATACGAAAACAAAT......	24	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................GCCAGCCCTGAAGAAGGTCTCC......................	22	1	1.00	1	0	1	0	0	0	0
........................GCCCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................CGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	1

droWil2

AA---ATAGATCAACGATCTCAATGCCCAAGTTAATGATCTTCGCGGCAAGTTGTAAGTA---CAC-------------------------------AAATAGAATCGATA---TATGTATATATA---------ATTATCGA----------GATATATA----TTGATAAAA------------------------------T--TT------------------------------------------CCAA------ATTTTTATAGCGTCAAGCCAGCCCTGAAGAAGGTCTCCAAATATGAAAACAAATTCGCCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................AGTTAATGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	20	1	8.00	8	7	0	1	0	0
...............................TTAATGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	18	1	7.00	7	6	0	0	1	0
............................AAGTTAATGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	21	1	4.00	4	4	0	0	0	0
......................ATGCCCAAGTTAATGATCTTCGC....................................................................................................................................................................................................................................................................................	23	1	4.00	4	3	0	0	1	0
.............................AGTTAATGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	19	1	3.00	3	2	0	1	0	0
.....................................................................................................................................................................................................................................................................................GCCAGCCCTGAAGAAGGT..........................	18	1	3.00	3	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................TGAAGAAGGTCTCCAAAT..................	18	1	2.00	2	0	0	0	2	0
.............................AGTTAATGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0
......................ATGCCCAAGTTAATGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	1	0
..............................GTTAATGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0
..............................GTTAATGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	0	0	1	0
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGT..........................	19	1	2.00	2	0	0	0	2	0
...........CAACGATCTCAATGCCCA....................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
...............................................................................................................................................................................................................................................................................CGTCAAGCCAGCCCTGAAGAAGGT..........................	24	1	2.00	2	0	0	0	2	0
..............................GTTAATGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...........................CAAGTTAATGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................AGCCAGCCCTGAAGAAGGTCTCC......................	23	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................TGAAGAAGGTCTCCAAATA.................	19	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................GAAGAAGGTCTCCAAATATGAA.............	22	1	1.00	1	0	1	0	0	0
......................ATGCCCAAGTTAATGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................CGTCAAGCCAGCCCTGAAGAAGGTCT........................	26	1	1.00	1	0	1	0	0	0
.................................AATGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................TAATGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCCTGAAGAAGGT..........................	20	1	1.00	1	0	0	1	0	0
................................TAATGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
........................GCCCAAGTTAATGATCTTCGCG...................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.........ATCAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
...........CAACGATCTCAATGCCCAAGT.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.........ATCAACGATCTCAATGCCC.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
....................................GATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
......................ATGCCCAAGTTAATGATCTTCGCG...................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
......................ATGCCCAAGTTAATGATCTTCGA....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..................................ATGATCTTCGCGGCAAGTT............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.................................AATGATCTTCGCGGCAAGTTC...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................CAAGCCAGCCCTGAAGAAGGT..........................	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................GTCAAGCCAGCCCTGAAGAAGGT..........................	23	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................AGAAGGTCTCCAAATATGAAAAC..........	23	1	1.00	1	1	0	0	0	0
....................CAATGCCCAAGTTAATGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0
.................................AATGATCTTCGCGGCAAGT.............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.........ATCAACGATCTCAATGCCCAAGTT................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...........................CAAGTTAATGATCTTCGCGGCG................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0

droVir3

AT---ATAGATCAACGATCTCAATGCTCAAGTTAACGATCTTCGCGGCAAATTGTAAGTA---AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................AACGATCTTCGCGGCAAATTCGT.........................................................................................................................................................................................................................................................................	23	1	5.00	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........GATCAACGATCTCAATGCT......................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCTCAAGTTAAC.............................................................................................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ATCTCAATGCTCAAGTTAACG............................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCAAGTTAACGATCTTCGCGGC.................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCAAA..............................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAATGCTCAAGTTAACGATCTT.......................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ACGATCTCAATGCTCAAGTT................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCTCAA...................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GTTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCAACGATCTCAATGCTCAA...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCAACGATCTCAATGCTCAAGTTAACG............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CAACGATCTCAATGCTCAAGTTA...............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCTCAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CAACGATCTCAATGCTCAAGT.................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGCTCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........CAACGATCTCAATGCTCAAGTT................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGCAAA..............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CAACGATCTCAATGCTCAA...................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AAGTTAACGATCTTCGCGGCAAATT............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CAAGTTAACGATCTTCGCGGCA................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCTCAATGCTCAAGTTAACG............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCAATGCTCAAGTTAACGATCT........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TAACGATCTTCGCGGCAAATTCG..........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AGTTAACGATCTTCGCGGCAAATTCGT.........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCAATGCTCAAGTTAACGATCTTCGC....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCTCA....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCAACGATCTCAATGCTCAAGTTA...............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TAACGATCTTCGCGGCAAAT.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................CAAGTTAACGATCTTCGCG...................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTCAATGCTCAAGTTAACGATCTTCG.....................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCTCAAGTTAACGATCTTCGCGG..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GATCAACGATCTCAATGCTC.....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CGATCTCAATGCTCAAGTTAACGATC.........................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AATGCTCAAGTTAACGATCTT.......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TGCTCAAGTTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAATGCTCAAGTTAACGAT..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATGCTCAAGTTAACGATCTTCGCGGCAA...............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TAACGATCTTCGCGGCAAATT............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ACGATCTCAATGCTCAAGT.................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCTCAATGCTCAAGTTAACGATCT........................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GATCTTCGCGGCAAATTCGT.........................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------CGA----T------------------------------TCC--------------------------------------------------------ATATATAGCGTTAAGCCAGCCTTGAAGAAGGTGTCCAAATACGAAAACAAATTTGCCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................TAAGCCAGCCTTGAAGAAG............................	19	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CTTGAAGAAGGTGTCCAAATACGA..............	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................GTTAAGCCAGCCTTGAAGAAG............................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AAGCCAGCCTTGAAGAAGGTGTCC......................	24	1	1.00	1	0	0	0	0	0	1

droGri2

A-----TAGATCAACGATCTCAATGCCCAAGTTAACGATCTTCGCGGCAAATTGTGAGTA---CCAATTACCCTTTGCATACCCTTGCAGACACTATGAATACAATGGATA---CTTATCTATATTCATACCTCAAT------------------CAAATA----TTGTCAAATTTGATGTGGCAATATTCAATACTCTGCAAGGGC----ATCCAAATTACTTGAAGCCCCAACTAAATAACTATTTT-----TTTTATCCAACGTACAGCGTTAAGCCAGCCCTGAAGAAGGTCTCCAAATACGAAAACAAATTTGCCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............ACGATCTCAATGCCCAAGTTAAC.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
......................ATGCCCAAGTTAACGATCT........................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0

dsi_16564

x:17100811-17100875 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads