ID:

dsi_16547

 Coordinate:

3l:7901684-7901833 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.2 -28.2 -28.1

Flybase annnotation

exon [3l_7901301_7901683_+]; CDS [3l_7901301_7901683_+]; intron [3l_7901684_7902072_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATCTCAGGGGTCTCAGTAGCCAGGACAAAATCACCCAGCTGCAAAAAAAGTAAGTGATCATTATGTGGGCCTAGGGGGAAGTCGGAATGACTAGTCGCAAACTTCAGTTCTGCCTATCTATTTAGATAGTCAATCATTAGTGATAGTGACACATGCTGTGAAAATTCTTATGACGTTGTCAGTTGGTAACTGGAACTTATTTCATATGCTAACCAAGTGTATCTTATAAATTAAAAACTGGTTCTGAAC
**************************************************(((((...((((((((((..(((...)))....((((((....(((.....)))...)))))).((((((....))))))....((((((....))))))))))))..)))).....)))))...(((.((((((...)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
...........................................................................................CTAGTCGCAAACTTCAGTTCTGCCT...................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................GTCGCAAACTTCAGTTCTGCCT...................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............CAGTAGCCAGGACAAAATCACCC..................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................GTCGCAAACTTCAGATCTGCCT...................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
GATCTCAGGGGTCTCAGTAGCCA................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................GTGAAGTCGGAATCGCTAGT.......................................................................................................................................................... 20 3 11 0.45 5 0 0 0 0 1 2 0 1 0 1
...........................................AAAAAAAGTAAGTGA................................................................................................................................................................................................ 15 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.....................................................................GATTAGGGGGAAGTCGGAAC................................................................................................................................................................. 20 3 6 0.33 2 0 2 0 0 0 0 0 0 0 0
.......................................................................CTGGGGTGAAGTCGGAA.................................................................................................................................................................. 17 2 17 0.29 5 0 0 0 2 1 0 0 0 2 0
........................................................................TAGGGTGAAGTCGGAACG................................................................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATGCTGTGAACATTCT................................................................................. 16 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................ATATAGATAGTCAACCATTGG............................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................ATGATTAGTGATAGTGA.................................................................................................... 17 1 12 0.17 2 0 0 0 0 0 2 0 0 0 0
.......................................................................CTAGGGTGAAGTCGTAA.................................................................................................................................................................. 17 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0
..............................................AAAAGTGAGTGATCGTTA.......................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0
.......................................................................CTAGGGTGAAGTCGGAACA................................................................................................................................................................ 19 3 8 0.13 1 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................TGATTAGTGATAGTGA.................................................................................................... 16 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
......................................................................ATTAGGGGGAAGTCGGAAC................................................................................................................................................................. 19 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................GATTAGTGATAGTGA.................................................................................................... 15 1 15 0.07 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................ATGATTAGTGATAGT...................................................................................................... 15 1 19 0.05 1 0 0 0 0 0 1 0 0 0 0
................................GACCCAGCTGGAAAAAAA........................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0
...............................................................................ATGTCGGAATGAGTAGAC......................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................ATGATTAGTGATAGTGC.................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................CTGACTAGTCGCGAAC................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CTAGAGTCCCCAGAGTCATCGGTCCTGTTTTAGTGGGTCGACGTTTTTTTCATTCACTAGTAATACACCCGGATCCCCCTTCAGCCTTACTGATCAGCGTTTGAAGTCAAGACGGATAGATAAATCTATCAGTTAGTAATCACTATCACTGTGTACGACACTTTTAAGAATACTGCAACAGTCAACCATTGACCTTGAATAAAGTATACGATTGGTTCACATAGAATATTTAATTTTTGACCAAGACTTG
**************************************************(((((...((((((((((..(((...)))....((((((....(((.....)))...)))))).((((((....))))))....((((((....))))))))))))..)))).....)))))...(((.((((((...)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
....AGTCCCCAGAATGATCG..................................................................................................................................................................................................................................... 17 2 6 0.17 1 1 0 0
.........................................................TCGTTATACACCCGGATCGC............................................................................................................................................................................. 20 3 8 0.13 1 0 1 0
..............................................................................................................GACGGATAGACACCTCTAT......................................................................................................................... 19 3 20 0.05 1 0 0 1

Generated: 04/24/2015 at 10:32 AM