ID:

dsi_16510

Coordinate:

3r:17405209-17405358 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-13.1	-13.1	-12.5

Flybase annnotation

five_prime_UTR [3r_17405045_17405208_+]; exon [3r_17405045_17405208_+]; intron [3r_17405209_17405760_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TATACACATATATCAAATAAACAAAGGAAAGGAGTCCTCAGAGAAGAGAAGTGTGTTTCAAAAACAAAATACTTTCGAAACAAAACGAAATGAATAAAAGCCAAAGCCACCCAGCAGCAACAACAAATACATAATCAGCAACTGTGCATATTTCTGCGAAGTTTGCTGCGTTTTGAGATCGTTTAAGTGGCCTTGTACACTCGGTACATATCCAGGAAAAGGAATTTATACCTTTCTATCTTCAAAACGT ****************************************************************************************************************************...((.(((((((((((.((((......)))).)).)))))).))).))..................*******************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
.................TAAACAAAGGAAAGGAGTCCTC...................................................................................................................................................................................................................	22	0	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................................................TTGAGATCGTTTAAGTGGCCT.........................................................	21	0	1	1.00	1	0	0	1	0	0	0
.....ACATATATCAAATAAACA...................................................................................................................................................................................................................................	18	0	2	1.00	2	0	2	0	0	0	0
..............................................................................................................................ATACATAATCAGCAACTG..........................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0
........................................................................................AATGAATAAAAGCCAAAGCCACCC..........................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0
................................................................CAAAATACTTTCGGAACCAAAA....................................................................................................................................................................	22	3	3	0.33	1	0	0	0	1	0	0
.............................................GAGAAGCGTGTTTAAAAAA..........................................................................................................................................................................................	19	2	8	0.13	1	0	0	0	0	1	0
.........................GGAGAGGCGTCCTCAGCGA..............................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1
.......................................................................................................AAGCCTCCCAGGAGCAA..................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0

Anti-sense strand reads

ATATGTGTATATAGTTTATTTGTTTCCTTTCCTCAGGAGTCTCTTCTCTTCACACAAAGTTTTTGTTTTATGAAAGCTTTGTTTTGCTTTACTTATTTTCGGTTTCGGTGGGTCGTCGTTGTTGTTTATGTATTAGTCGTTGACACGTATAAAGACGCTTCAAACGACGCAAAACTCTAGCAAATTCACCGGAACATGTGAGCCATGTATAGGTCCTTTTCCTTAAATATGGAAAGATAGAAGTTTTGCA *******************************************************...((.(((((((((((.((((......)))).)).)))))).))).))..................****************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
................................TCAGGAGTCTCTTCTCTTCAC.....................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.............................TCCTCAGGAGTCTGGTCTCTG........................................................................................................................................................................................................	21	3	2	0.50	1	0	0	1	0	0
.....TGTATATAGTTTATTT.....................................................................................................................................................................................................................................	16	0	7	0.43	3	0	3	0	0	0
................................................................................GTTTTGTTTTAATTATTTTCG.....................................................................................................................................................	21	2	7	0.14	1	0	0	0	0	1
......................................................................TTAGAGCTTTGGTTTGCTTTA...............................................................................................................................................................	21	3	9	0.11	1	0	0	0	1	0
.....TGTATATAGTTTATT......................................................................................................................................................................................................................................	15	0	10	0.10	1	0	1	0	0	0
................................................................................................................................GGTATTAGTCGTTAACA.........................................................................................................	17	2	20	0.05	1	0	0	0	1	0

Generated: 04/23/2015 at 07:34 PM