ID:

dsi_16477

 Coordinate:

3r:12830240-12830505 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2 -3.7 -3.7 -3.5

Flybase annnotation

Antisense to CDS [3r_12829576_12830215_+]; CDS [3r_12830507_12830762_-]; Antisense to three_prime_UTR [3r_12830216_12830293_+]; Antisense to exon [3r_12829576_12830293_+]; three_prime_UTR [3r_12830270_12830506_-]; exon [3r_12830270_12830762_-]

No Repeatable elements found

Sense Strand Reads

##############################################################################################################################################################################################################################################################################################--------------------------------------------------------------------------------
ACCCGACCTGATGCGCTACGAACATATTGTGGTTCAGTCTGAAACTTAAGGTGGCATACACGGCCATATCCCAAAGCCATTAGAGTCATTCGCTGTAGCTGCTACGATTGCAGACTGGTGCAACGAATTTTAAACGCAAACTGCAGAGATAAAGCTAAGCTTCTCGATTGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTTTTAGACACTCCAAAAAAGGATAGTTGCTAATAATATCTCGTTATTTCCACTCCCCCTCTAAAAGGGTTTCAAAACATATTGTTTTATTTCCAAATTGCAGGAATCCATCATAATCCTAATTGACCTAAGCTAAAGGTGCATCGGCATCAA
************************************************************************************************************************************************************************************.((.............(((.((((.(((...))))))).)))............))********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 O002
Head
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 M053
female body
 M024
male body
....................................................................................................................................................................................ATTTTATGCTCTAGTTGT........................................................................................................................................................................ 18 0 1 21.00 21 0 19 0 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................................................TGTTAAGAACGTTGTAAGCTTTTAGA................................................................................................................................................. 26 0 1 8.00 8 3 0 0 3 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................AGCTTTTAGACACTCCAAAAAAGGA.................................................................................................................................. 25 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TAAGCTTTTAGACACTCCAAAAAAGGA.................................................................................................................................. 27 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................TTCGCTGTAGCTGCTACGATTGTAGAC........................................................................................................................................................................................................................................................... 27 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATTTTATGCTCTAGTTGTTA...................................................................................................................................................................... 20 0 1 3.00 3 0 2 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTCCAAAAAAGGATAGTTGCTAATAATA................................................................................................................... 28 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAGACACTCCAAAAAAGGATAGTTGC........................................................................................................................... 26 0 1 3.00 3 0 0 1 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTTTATGCTCTAGTTGTTAAGAACGT............................................................................................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAGTTGTTAAGAACGTTGTAAGCTTT..................................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTTAAGAACGTTGTAAGCTTTTAGACA............................................................................................................................................... 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAAGAACGTTGTAAGCTTTTAGACACT............................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GTCCTAGGAAGATTTTATGCTCTAGT........................................................................................................................................................................... 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTAAACGCAAACTGCAGAGATAAAGC................................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TAGTTGCTAATAATATCTCGTTATT......................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTTAAACGCAAACTGCAGAGATAAAGC................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TAAACGCAAACTGCAGAGATAAAGCTAAG............................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTAAGAACGTTGTAAGCTTTTAGACACT............................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTTTATGCTCTAGTTGTTA...................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTTAAACGCAAACTGCAGAGATAAAGCT.................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.CCCGACCTGATGCGCTACGAACATA.................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................TTCGCTGTAGCTGCTACGATTGTAGACTGG........................................................................................................................................................................................................................................................ 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTAAGCTTTTAGACACTCCAAAAA...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TAGTTGCTAATAATATCTCGTTAT.......................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTTTTAGACACTCCAAAAAAGGATAGT.............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTAGACACTCCAAAAAAAGGA................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAGCTTTTAGACACTCCAAAAAAGGA.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ATTAAGAACGTTGTAAGCTT...................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................TTAGACACTCCAAAAAAGGATAGT.............................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AAGAACGTTGTAAGCTTTTAGACACTC............................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTGCAGACTGGTGCAACGAATTTT........................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................ATATCCCAAAGCCATTAGAGTC....................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................ATAAAGCTAAGCTTCTCGATTGTCC................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...CGACCTGATGCACTACGAACATATTG................................................................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TAAACGCAAACTGCAGAGATAAAGC................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CAGACTGGTGCAACGAATTTTAAACGCAAAC................................................................................................................................................................................................................................. 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TCGATTGTCCTAGGAAGATTTTATGC................................................................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................TATTGTGGTTCAGTCTGAAACTTA.............................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTTTAAACGCAAACTGCAGAGATAAAGC................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTTTATGCTCTAGTTGT........................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................TACGAACATATTGTGGT............................................................................................................................................................................................................................................................................................................................................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CGCAAACTGCAGAGATAAAGCTAAGCTA............................................................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................TCTGAAACTTAAGGTGGCATACAC................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTGTCCTAGGAAGATTTTATGC................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGTCCTAGGAAGATTTTATGCTCTA............................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTTAAGAACGTTGTAAGCTTTTAGAA................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTGTAGACTGGTGCAACGAATTTTAAA........................................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTGCAGACTGGTGCAACGAATTTTAAA........................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................TGCAGACTGGTGCAACGAATTTTAA......................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................AGTTGTTAAGAACGT............................................................................................................................................................... 15 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................TGACCTAAGCTAAAGGTGCATCGGCA.... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CCCCCTCTAAAAGGGTTTC................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGTCCTAGGAAGATTT...................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CTCGATTGTCCTAGGAAGATTTTATGC................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................TTCAGTCTGAAACTTAAGGTGGCAT..................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................ACATATTGTGGTTCAGTCTGAAACTT............................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTGTCCTAGGAAGATTTTATGCTCT.............................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TCTCGATTGTCCTAGGAAGATTTTA.................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TGCTCTAGTTGTTAAGAACG................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................TTCTCGATTGTCCTAGGAAGA......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................AATTTTAAACGCAAACTGCAGAGAA........................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................GTAGATTGTCCAAGGAAGAT........................................................................................................................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................TTTTATGGTCTTGTTGTTAAGAA.................................................................................................................................................................. 23 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................ATTCTGGTTCTGTCTGAA................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................TAGGAAGATCTGATGC................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................ACATATTGTGTTATTTC............................................................ 17 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################################################################################################
TGGGCTGGACTACGCGATGCTTGTATAACACCAAGTCAGACTTTGAATTCCACCGTATGTGCCGGTATAGGGTTTCGGTAATCTCAGTAAGCGACATCGACGATGCTAACGTCTGACCACGTTGCTTAAAATTTGCGTTTGACGTCTCTATTTCGATTCGAAGAGCTAACAGGATCCTTCTAAAATACGAGATCAACAATTCTTGCAACATTCGAAAATCTGTGAGGTTTTTTCCTATCAACGATTATTATAGAGCAATAAAGGTGAGGGGGAGATTTTCCCAAAGTTTTGTATAACAAAATAAAGGTTTAACGTCCTTAGGTAGTATTAGGATTAACTGGATTCGATTTCCACGTAGCCGTAGTT
**********************************************************************************************************************************.((.............(((.((((.(((...))))))).)))............))************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M025
embryo
 O002
Head
 SRR553488
RT_0-2 hours eggs
 M023
head
 M053
female body
 SRR902008
ovaries
 O001
Testis
........................................................................................................................................................................................................................................................................................................................CGTCCTTAGGTAGTATTAGGATTAACT........................... 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................AGGTAGTATTAGGATTAACTGGATT...................... 25 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................AGGATTAAGATTAACTGGATTCGATT................. 26 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................TAGGTAGTATTAGGATTAACTGGAT....................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CAAAATAAAGGTTGAACGTCC................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................GGTAGGATTAAGATTAACTGGATT...................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TAACGTCCTTAGGTAGTATTAGGAT................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CAACATTCGAAAATCTGTGAGGTT......................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGGGGGAGATTTTCCCAAAGTT.............................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................TAGGTAGGATTAAGATTAACTGGATT...................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................AGGGGGAGATTTTCCCAAAGTTTTGT.......................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTAGTATTAGGATTAACTGGATTCGA................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................CCGGTATAGGGTTTCGGT............................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................TTCGATTCGAAGAGCTAAC.................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GAGGGGGAGATTTTCCCAAAGTTTTGT.......................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AGGTTTAACGTCCTTAGGTAGTATTAG................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................AGGTTTAACGTCCTTAGGTAGTAT...................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TATAGAGTAAGAAAGTTGAGGG................................................................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CCTTAGGTAGTATTAGGATTA.............................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................TTCGGTAATCTCAGTAAGCGA................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................AGATTTTCCCAAAGTTTTGTATAA...................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................CGTCCTTAGGTAGTATTAGGATTAAC............................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GTTTAACGTCCTTAGGTAGTATTAG................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................................................TAGGTAGTATTAGGATTAACTGGATT...................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................TTAGGTAGTATTAGGATTAACTGGAT....................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........CTACGCGATGCTTGTATA................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................TCCATTACCACGTAGCCG..... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AATAAAGGTGCTGGGGAGACT......................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................GCCGGTATAGCGTTT................................................................................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................TTAGGTAATATGAGGACTAA............................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................TTGTTCCAAAGTTATGTATA....................................................................... 20 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................AAAAATTGCGTTAGACGT............................................................................................................................................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................AATCTGTGAGGTTTTTA..................................................................................................................................... 17 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................TATAGCAAAATAAAGGCT......................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................CCAAAGTTATGTATA....................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:12830190-12830555 - dsi_16477 ACCCGACCTGATGCGCTACGAACATATTGTGGTTCAGTCTGAAACTTAAGGTGGCATACACGG--------CC----ATATCCCAAAGCCATTAGAGTCATTCGCTGTAGCTGCTA-CGA-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA-------AAAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------AC-ATATT-GTTTT---------------------------------------------------------ATTTCCAAA-------T--T-------GC-----------------AGGAATCC-ATCATAATCCTAATTGACCTAAGCTAAAGGTGCATCGGCATCAA
droSec2 scaffold_0:13663163-13663527 - ACCCGACCTGATGCGCTACGAACATATTGTGGTTCAGTCTGAAACTTAAGGTGGCATACACGG--------CC----ATATCCCAAAGCCATTAGAGTCATTCGCTGTAGCTGCTA-CGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAGA--------AC-ATATT-GTTTT---------------------------------------------------------ATTTCCAAA-------T--T-------GC-----------------AGGAATCC-ATCATAATCCTAATTGACCTAAGCTAAAGGTGCATCGGCATCAA
dm3 chr3R:8283881-8284246 + ACCCGACCTGATGCGCTACGAACATATTGTGGTTCAGTCTGAAACTTAAGGTGCCGTACACGG--------CC----ATTTCCCAAAGCCATTAGAGTCATTCGCTGTAGCCGCTA-CGA-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA-------AATGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------AC-ATATT-GTTTT---------------------------------------------------------ATTTCCAAC-------T--T-------GC-----------------AGAAATCC-ATTCTAATTCTAATTAACCTAAGCCAATGGTGCATCAGCATCAA
droEre2 scaffold_4770:13336490-13336842 - ACCCGACCTGATGCGCTACGAACATATTGTTGTTCAGTCCGAATCTTAAGGTGGCATC--CGG--------CC----ATTTCCCAAAGCCATTAGAACCATTCGCTGTAGCAGCTA-CGT-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAA--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAG--------TC-ATAAT-GTTTT---------------------------------------------------------ATTTCCCAT-------T--G-------GC-----------------AGGAATCC-----------TAATTAACTTAAGCTAATGGTGCATCGGCATCAA
droYak3 3R:12607660-12608012 + ACCCGACCTGATGCGATACGAACATATTGTGGTTCAGTCCGAATCTTAAGGTGGCATC--CGG--------CC----ATTTCCCAAAGCCATTAGAACCATTCGCTGTAGCTGCTA-CGA-----TTGTAGACCGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------AC-AAAAT-GTTTT---------------------------------------------------------ATTTCCCAC-------T--T-------GC-----------------AGGAATCT-----------TAATTAACTTAAGCTAATGGTGCATCGGCATCAA
droEug1 scf7180000409615:531503-531854 + ACCCGACCTCATGCGCTACGAACATATTGTGGTGCAATCTGAATCTTAGACCGGCGTC--CGG--------CC----ATTTCCCAAAGCCATTAGACCCATTCGCTGTAGCTGCTG-CTG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTTAACGCAAACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------TT-A-AGT-GTTTT---------------------------------------------------------ATTTCCCCA-------T--T-------GC-----------------AGGAATCT-----------TATTTGACTTAAGCTAATGGTGCATCGGCGTCTA
droBia1 scf7180000302155:14149-14495 - GCCCGACCTGATGCGCTACGAACAGGTTGTGGTGCAGTCCGAATCTTAGAGCGGCGTC--CGG--------CC----ATTATCCAAAGCCATTAGACCCCTTCGCTGTAGCTGCTA-CGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTA------AACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAA--------TC-TTAGT-GTTTT---------------------------------------------------------ATTTCCCCT-------T--C-------GC-----------------AGGAAGCT-----------TATCTAACTTAGGCTAAAGGCGCATCGGCATCCA
droTak1 scf7180000415366:238484-238815 - GCCCGACCTGATGCGCTACGAACAGATTGTGGTGCAGTCCGAATCTTA-------------------------------------AAGCCATTAGAACCCTTCGCTGTAGCTGCTT-CGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGTAAACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTTTTTAGACAC-----TCCGTT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------TC-GTAGA-GTTTT---------------------------------------------------------ATTTCCCCT-------TT-T-------CC-----------------AGGAAGCT-----------TATCGAACTTAGGCTAAGGGTGCATCGGCATCCA
droEle1 scf7180000490702:10912-11303 - GCCCGACCTCATGCGCTACGAGCATATAGTGGTGCAGTCCGAATCTTAGAGCTGCGTC--CG-CCCATTTGCC----ATTTCCCAAAGCCATAGAACCCATTCGCTGTAGCTGCTG-GGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGG-AAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATTATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------TAG-GG-------TTTCAAA--------AC-AAATTAGTTTTATTTCCCCCTTCAAACGTGTTTTTTAAATCATAT-----------------TG-----------AT-------ATTCTTTTTA-----------------------AGGCT-----------TATTTAACTTAAGCTAGTGGTGCATCGGCATCGA
droRho1 scf7180000779237:70312-70676 + GCCCGACCTGATGCGCTACGAGCATATAGTGGTGCAGTCCGAATCTTAGAGCTGCGTC--CGG--------CC----ATTTTCCAAAGCCATAGAACCCATTCGCTGTAGCTGCTA-GGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGG-AAAGCTAAGCTT-CTCTAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA--------AAGGATAGTTGCTAATTATATCTCGTTATT--TCCACTCCCCCTTTAA---------------------------------TAG-GG-------TTTCAAA--------TC-AGAGC-GTTTTATTTCCCTCTCTAAAAGTGTT--TTAAATCTTAG-----------------TGTTTTATTTC---------------------------------------------------------------------TAGGCTAGAGGTGCATCGGCATCGA
droFic1 scf7180000453812:800696-801049 - GCCCGACCTAATGCGCTACGAGCACATTGTGGTGCAGTCCGAATCTTAGGACGGCTTC--CGG--------CC----ATTTTGAAAAGCCATAGAACCCACTCGCTGTAGCAGCTAACGG-----TTGCAGACCGG-TGC------------AACGA---------------------ATTTTTAACGCAAACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TATCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TTCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAA--------TT-GAAGT-GTTTT---------------------------------------------------------ATTTTCCGT-------T--C-------GT-----------------AGGAAGCT-----------GAACTAACTTAAGCTAAAGGTGCATCGGCATCAA
droKik1 scf7180000302475:349188-349535 + GCCCGACCTAATGCGCTATGAGCACGTGGTGGTGCAGTCCGAGTCCTAGAGGAACCC----------------------------------------CCAATCGCTGTAGCTGCTA-TAG-----TTGCAGACTCT-TGC------------AACGA---------------------ATTTTAACCGTAAACTGCG--------------------GAGGAAAAGCTAAGCTT-CTCAATACTGTCCTAGGAAGATTTTACGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACACGCCACTCCGAT--------GAGGATAGTTGCTAATAATATCTCGTTATT--TCCTCTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAC--------TACACCGT-CTTTT---------------------------------------------------------ATTT------------T--T-------GCAGCATGTAA--AAC---GGGAG-CAGAAGCTAATC----CTCACCTAAACTAGAGGTGCGTCCGCATCGA
droAna3 scaffold_13340:7665886-7666250 + GCCCGACCTGATGCGATACGAGCACGTGGTGGTGCAGTCTGAGTCTTAGGACGACGCT--CC-TCGATGGGCGAGTGATTACCAAAAGCCATAGAAACTGTACGCCGTAGCTGCTA-A-G-----TTGCAGACCTG-TGC------------AACGA---------------------ATTTTAAATGCAAACTGCA--------------------GAGAAAAAGCTAAGCTT-CTCGAA--TGTCCTAGGATGATTTTACGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAC-----GCCGAA--------GAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAT--------TC-AGATT-GTTTTATTTCCCT--------------------------------------------------------CG-------CT-A-------AT-----------------GGGAA-CAG----------GTGTTAATTTAAACTAATGGTGCATCGGCATCCA
droBip1 scf7180000396708:1178190-1178546 - CCCTGACCTGATGCGATACGAGCATGTGGTGGTGCAGTCAGAGTCTTAGAGCGATGCT--CCG--------CCAGTGATTACCAAAAGCCATAGAAACTGTACGCCGTAGCTGCTA-A-G-----TTGCAGACCTG-TGC------------AACGA---------------------ATTTTAAATGCAAACTGCA--------------------GAGAAAAAGCTAAGCTT-CTCGAA--TGTCCTAGGAAGATTTTACGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAC-----GCCGAA--------GAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAT--------TC-GGATT-GTTTT---------------------------------------------------------ATTTCCCCA-------TT-A-------AT-----------------GGGAA-CAG----------GTGTTAGCTTAAGCTAATGGTGCATCGGCATCCA
dp5 2:5512601-5512989 + CCCCGACCTGATGCGCTATGAGCATATAGTTGTGCAAGCCGAGTCTTAGATTGACGCT---------------AGTGATTAG----------------CTGACGCAGTAGCTGCTAATAG-----TTGCCGAACTA-TGC------------AACGATTTTAGTTCGATTGAAGGAACATTTTAAACGCAAACTGCATTCACGTAA-----CCGATGGGGGGAAAGCTAAGCTT-CTCAAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAT-----GCCGAT-------GAAAGATAGTTGCTAAAAATATCTCGTTATT--TCCACTCCACCTCCAG---------------------------------AGCTGTTTTCAATTTTTGGTTGGGTTACGC-ATACT--TTTT---------------------------------------------------------ATTTCCATG-------CT-T-------AA-----------------AGGAA-CG-----------TCTATAGTTTAGACCAATGGTGCATCGGCGTCTA
droPer2 scaffold_19:1229025-1229413 + CCCCGACCTGATGCGCTATGAGCATATAGTTGTGCAAGCCGAGTCTTAGATTGACGCT---------------AGTGATTAG----------------CTGACGCAGTAGCTGCTAATAG-----TTGCCGAACTT-TGC------------AACGATTTTAGTTCGATTGAAGGAACATTTTAAACGCAAACTGCATTCACGTAA-----CCGATGGGGGGAAAGCTAAGCTT-CTCAAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAT-----GCCGAT-------GAAAGATAGTTGCTAAAAATATCTCGTTATT--TCCACTCCACCTCCAG---------------------------------AGCTGTTTTCAATTTTTGGTTAGGTTACGC-ATACT--TTTT---------------------------------------------------------ATTTCCATG-------CT-T-------AA-----------------AGGAA-CG-----------TCTATAGTTTAGACCAATGGTGCATCGGCGTCTA
droWil2 scf2_1100000004902:9397503-9397746 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCTAAGCTT-CTCACT--TGTCCTAGGAAGATTTTATGCTCTAGTTAATAAGAACGTTGTACGCTT-TTAGGCAG------CAAAC--------CGGGATAGTTGCTACAAATATTTCGTTTTTGTTCCACT------CTAAAACAAAAAAAAAACAAACAAAAAATTATACTAAATCAGT-------TTTCAAT---------C-T------------------------------------------AGTGAAACGCTAAACAATTTGTTTTATTTCCAAT-------CT-T--------------------------GGGAA-AAA----------AT----GCTCAGGCTAATGGGGCATCAGCATCCA
droVir3 scaffold_12855:2846858-2847202 + GCCCGATCAGATGCGCTATGAGCACGTAGTGGTGCAGTCCGAAACATAGATCAATTA-TGCAG--------CC----TGTCCGAAAAACGATA---------------------------------------------AC------------AATTT---------------------ATTTCAATTGCGAATTGCATTAG-----CTTAGAT----AATGAAAAGCTAAGCTTCTTCACT--TATCCTAGGATGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAGCAAATGCCGAATA-----ATCGCATAGTTGCTAACGA---CTCGTTATT--TCCATTCACACT--AA---------------------------------AAA-C--------TTTTAAT--------T---------------------------------------------AGAGAAACGCTATGCAATTTGTTTTATTAACATGGTCGCCAGT-C-------AA-----------------AGAAA------------------AATTTTAAGTCAGCGGCGCATCTGCATCCA
droMoj3 scaffold_6540:10365845-10366172 - GCCCGATCAGATGCGGTACGAGCACGTCGTGGTTCAGTCCGAAACATAGATCAA--------------------------------------------------------CAACTC-CAG-----TTGAAGAAAAG-ATC------------AATTT---------------------ATTTCAATTGCTAATTGCATTAG-----CTTAGAG----AATGAAAAGCTAAGCTTTTTCACT--TATCCTAGGATGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGAGAGCAAATGCCGAATA-----ATCGCATAGTTGCTAACGA---CTCGTTATT--TCCACTCACACT--AA---------------------------------AAA-C--------TTTTAAT--------T---------------------------------------------AGAGAAACGCTATGCAATTTGTTTTATTTACACA-------A------------------------------------------------AATCAAAGTTATGAAAGCGGCGCATCGGCATCCA
droGri2 scaffold_14906:3820830-3821236 - ACCCGACCAGATGCGCTATGAGCACGTTGTTGTGCAGTCTGAAACATAGATCAACTTC--AG---------C--------------------------CTGCTGCAGTAGCTTCTA-AGGATCTCTTGCAGTCCCAAAACAACAACAAAAACAAAT-------------------AATATTTTGATCGCAAATTGCAATTATGTAACTTAGAG----AATGAAAAGCAAAGCTTTCTCACT--TATCCTAGGATGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAGCAAATGCTAAATATTAATAATGCATACTTGCTAAAGA---CTCGTTATT--TCCACTCACAC--TAA---------------------------------AAA-CT-------TTTTAAT--------T---------------------------------------------AGAGAAACGCTATGCAATCTGTTTTATTTTTTTT-------ATTCACATTATGCATTATGTGTGCAACTAAGG-------------------GGTAGATTAAGCCAATGGCGCATCCGCATCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACCCGACCTGATGCGCTACGAACATATTGTGGTTCAGTCTGAAACTTAAGGTGGCATACACGG--------CC----ATATCCCAAAGCCATTAGAGTCATTCGCTGTAGCTGCTA-CGA-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA-------AAAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------AC-ATATT-GTTTT---------------------------------------------------------ATTTCCAAA-------T--T-------GC-----------------AGGAATCC-ATCATAATCCTAATTGACCTAAGCTAAAGGTGCATCGGCATCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................ATTTTATGCTCTAGTTGT.....................................................................................................................................................................................................................................................................................................................................18121.0021000019200000000000
..............................................................................................................................................................................................................................................................................TGTTAAGAACGTTGTAAGCTT-TTAGA.............................................................................................................................................................................................................................................................................................................2618.00800000033110000000
..............................................................................................................................................................................................................................................................................................AGCTT-TTAGACAC-----TCCAAA-------AAAGGA..................................................................................................................................................................................................................................................................................2514.00400000031000000000
............................................................................................................................................................................................................................................................................................TAAGCTT-TTAGACAC-----TCCAAA-------AAAGGA..................................................................................................................................................................................................................................................................................2713.00300000021000000000
...............................................................................................................................................................................................................................................................ATTTTATGCTCTAGTTGTTA...................................................................................................................................................................................................................................................................................................................................2013.00300002100000000000
...........................................................................................................................................................................................................................................................................................................C-----TCCAAA-------AAAGGATAGTTGCTAATAATA...................................................................................................................................................................................................................................................................2813.00300000021000000000
.....................................................................................................................................................................................................................................................................................................TAGACAC-----TCCAAA-------AAAGGATAGTTGC...........................................................................................................................................................................................................................................................................2613.00300000000201000000
................................................................................................................................................................................................................................................................TTTTATGCTCTAGTTGTTAAGAACGT............................................................................................................................................................................................................................................................................................................................2612.00200000010001000000
..........................................................................................................................................................................................................................................................................TAGTTGTTAAGAACGTTGTAAGCTT-T.................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
..............................................................................................................................................................................................................................................................................TGTTAAGAACGTTGTAAGCTT-TTAGACA...........................................................................................................................................................................................................................................................................................................2812.00200000011000000000
.................................................................................................................................................................................................................................................................................TAAGAACGTTGTAAGCTT-TTAGACAC-----T....................................................................................................................................................................................................................................................................................................2712.00200000020000000000
....................................................................................................................................................................................................................................................GTCCTAGGAAGATTTTATGCTCTAGT........................................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
.....................................................................................................................................................................................TTAAACGCAAACTGCA--------------------GAGATAAAGC...................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................TAGTTGCTAATAATATCTCGTTATT--.......................................................................................................................................................................................................................................................2512.00200000020000000000
....................................................................................................................................................................................TTTAAACGCAAACTGCA--------------------GAGATAAAGC...................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................................................................................................................................TAAACGCAAACTGCA--------------------GAGATAAAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
................................................................................................................................................................................................................................................................................TTAAGAACGTTGTAAGCTT-TTAGACAC-----T....................................................................................................................................................................................................................................................................................................2811.00100000010000000000
................................................................................................................................................................................................................................................................TTTTATGCTCTAGTTGTTA...................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
....................................................................................................................................................................................TTTAAACGCAAACTGCA--------------------GAGATAAAGCT..................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.CCCGACCTGATGCGCTACGAACATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
..........................................................................................................................................................................................................................................................................................TGTAAGCTT-TTAGACAC-----TCCAAA-------AA......................................................................................................................................................................................................................................................................................2511.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................TAGTTGCTAATAATATCTCGTTAT..........................................................................................................................................................................................................................................................2411.00100000010000000000
................................................................................................................................................................................................................................................................................................CTT-TTAGACAC-----TCCAAA-------AAAGGATAGT..............................................................................................................................................................................................................................................................................2711.00100000010000000000
.............................................................................................................................................................................................................................................................................................AAGCTT-TTAGACAC-----TCCAAA-------AAAGGA..................................................................................................................................................................................................................................................................................2611.00100000010000000000
....................................................................................................................................................................................................................................................................................................TTAGACAC-----TCCAAA-------AAAGGATAGT..............................................................................................................................................................................................................................................................................2411.00100000000001000000
..................................................................................................................................................................................................................................................................................AAGAACGTTGTAAGCTT-TTAGACAC-----TC...................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.............................................................................................................................TTGCAGACTGG-TGC------------AACGA---------------------ATTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
.............................................................................ATATCCCAAAGCCATTAGAGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
............................................................................................................................................................................................................................ATAAAGCTAAGCTT-CTCGAT--TGTCC..............................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
......................................................................................................................................................................................TAAACGCAAACTGCA--------------------GAGATAAAGC...................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
................................................................................................................................CAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................3111.00100000010000000000
............................................................................................................................................................................................................................................TCGAT--TGTCCTAGGAAGATTTTATGC..............................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
........................TATTGTGGTTCAGTCTGAAACTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000001000000000
...................................................................................................................................................................................TTTTAAACGCAAACTGCA--------------------GAGATAAAGC...................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
................................................................................................................................................................................................................................................................TTTTATGCTCTAGTTGT.....................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
................TACGAACATATTGTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..........................................................................................................................................................................................CGCAAACTGCA--------------------GAGATAAAGCTAAGCTA-...........................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.....................................TCTGAAACTTAAGGTGGCATACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
................................................................................................................................................................................................................................................T--TGTCCTAGGAAGATTTTATGC..............................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
...................................................................................................................................................................................................................................................TGTCCTAGGAAGATTTTATGCTCTA..........................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
..............................................................................................................................................................................................................................................................................TGTTAAGAACGTTGTAAGCTT-TTAGAA............................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.............................................................................................................................TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
..............................................................................................................................TGCAGACTGG-TGC------------AACGA---------------------ATTTTAA.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...........................................................................................................................................................................................................................................................................AGTTGTTAAGAACGT............................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCTAAGCTAAAGGTGCATCGGCA....2611.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................CCCCCTCTAA---------------------------------AAG-GG-------TTTC.....................................................................................................................................................................................1911.00100000000001000000
...................................................................................................................................................................................................................................................TGTCCTAGGAAGATTT...................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
...........................................................................................................................................................................................................................................CTCGAT--TGTCCTAGGAAGATTTTATGC..............................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
................................TTCAGTCTGAAACTTAAGGTGGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
.....................ACATATTGTGGTTCAGTCTGAAACTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
................................................................................................................................................................................................................................................T--TGTCCTAGGAAGATTTTATGCTCT...........................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.........................................................................................................................................................................................................................................T-CTCGAT--TGTCCTAGGAAGATTTTA.................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.....................................................................................................................................................................................................................................................................TGCTCTAGTTGTTAAGAACG.............................................................................................................................................................................................................................................................................................................................2011.00100000000100000000
........................................................................................................................................................................................................................................TT-CTCGAT--TGTCCTAGGAAGA......................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
............................................................................................................................................................A---------------------ATTTTAAACGCAAACTGCA--------------------GAGAA........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
droSec2
ACCCGACCTGATGCGCTACGAACATATTGTGGTTCAGTCTGAAACTTAAGGTGGCATACACGG--------CC----ATATCCCAAAGCCATTAGAGTCATTCGCTGTAGCTGCTA-CGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAGA--------AC-ATATT-GTTTT---------------------------------------------------------ATTTCCAAA-------T--T-------GC-----------------AGGAATCC-ATCATAATCCTAATTGACCTAAGCTAAAGGTGCATCGGCATCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................CTCGAT--TGTCCTAGGAAGAT.....................................................................................................................................................................................................................................................................................................................................................2011.0010100
..........................................................................................................................................................................................................................................................................................................AC-----TCCAAA--------AAGGATAGTTGCTA.........................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................................CTA-CGG-----TTGCAGACTGG-TGT------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................................................................................T-CTCGAT--TGTCCTAGGAAGATTTT..................................................................................................................................................................................................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................CGAT--TGTCCTAGGAAGATTT...................................................................................................................................................................................................................................................................................................................................................2011.0010001
dm3
ACCCGACCTGATGCGCTACGAACATATTGTGGTTCAGTCTGAAACTTAAGGTGCCGTACACGG--------CC----ATTTCCCAAAGCCATTAGAGTCATTCGCTGTAGCCGCTA-CGA-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA-------AATGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------AC-ATATT-GTTTT---------------------------------------------------------ATTTCCAAC-------T--T-------GC-----------------AGAAATCC-ATTCTAATTCTAATTAACCTAAGCCAATGGTGCATCAGCATCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................................................................................A-CGA-----TTGCAGACTGG-TGC------------AACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TGGATAGTTGCTAATAATATCTCGT.............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TGTGGTTCAGTCTGAAACTTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CCTAGGAAGATTTTATGCTCT...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGTCTGAAACTTAAGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TGGATAGTTGCTAATAAT....................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTCAGTCTGAAACTTAAGGTGCCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ATGGATAGTTGCTAATAATATCTCGT.............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TGTCCTAGGAAGATTTTATGCTCT...........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................TACACGG--------CC----ATTTCCCAAAGCCATTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GTCCTAGGAAGATTTTATGCT.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................TTTAAACGCAAACTGCA--------------------GAGATAAAGC...................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCCAAA-------AATGGATAGTTGCTAATAAA....................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTATGCTCTAGTTGTTAAGAACGTTG..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................TTTTATGCTCTAGTTGTTAAGAACGTTG..........................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TAATATCTCGTTATT--TCCACTCCC..............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AAA-------AATGGATAGTTGCTAATAAT....................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TTAGACAC-----TCCAAA-------AATGGATAGTT.............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CACTCCCCCTCTAA---------------------------------AAG-GG-------TT.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TAAGCTT-CTCGAT--TGTCCTAGGAAGA......................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TGTTAAGAACGTTGTAAGCTT-TTAGAC............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................AGCTT-TTAGACAC-----TCCAAA-------AATGG...................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTC.....................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................CTT-TTAGACAC-----TCCAAA-------AATGGA..................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TT-CTCGAT--TGTCCTAGGAAGA......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................AAGCTT-CTCGAT--TGTCCTAGGAAGAT.....................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GTTAAGAACGTTGTAAGCT....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AAACGCAAACTGCA--------------------GAGATAAAGCT..................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-G.................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................T-CTCGAT--TGTCCTAGGAAGATT....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................GCTT-TTAGACAC-----TCCAAA-------AATGGATA................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AGTTGCTAATAATATCTCGTT............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAAA-------AATGGATAGTTGCTAATA......................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................ATGCTCTAGTTGTTAAGAACGTTGT.........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TAAAGCTAAGCTT-CTCGAT--TGTCC..............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTTTAAACGCAAACTGCA--------------------GAGATAAAGCC..................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCTGAAACTTAAGGTGCCGTACACGG--------CC----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................CTAGGAAGATTTTATGCTCT...........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AAACGCAAACTGCA--------------------GAGATAAAGC...................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................G-TGC------------AACGA---------------------ATTTTAAACGCAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TAAGAACGTTGTAAGCTT-TTAGACAC-----.....................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CCAAA-------AATGGATAGTTGCTAATA......................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...........................................................................................................................................................................................................................................................................................................................................TAATAATATCTCGTTATT--TCCACTCCCCC............................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GAT--TGTCCTAGGAAGATTTTATGCT.............................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TCATTCGCTGTAGCCGCTA-CGA-----TTGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CTCTAGTTGTTAAGAACGTTGTAA.......................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TCCAAA-------AATGGATAGTTGCTAATAATA...................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AGCTAAGCTT-CTCGAT--TGTCCTAGGAA........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................AT--TGTCCTAGGAAGATTTTATGCTCT...........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAGCCAATGGTGCATCTCG.....2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCCGACCTGATGCGCTACGAACATATTGTTGTTCAGTCCGAATCTTAAGGTGGCATC--CGG--------CC----ATTTCCCAAAGCCATTAGAACCATTCGCTGTAGCAGCTA-CGT-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAA--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAG--------TC-ATAAT-GTTTT---------------------------------------------------------ATTTCCCAT-------T--G-------GC-----------------AGGAATCC-----------TAATTAACTTAAGCTAATGGTGCATCGGCATCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................TATCTCGTTATT--TCCACTCCCCCTCTA........................................................................................................................................................................................................................................2713.0030000003
.......................................................................................................................................................................................................................................................CTAGGAAGATTTTATGCTCTA..........................................................................................................................................................................................................................................................................................................................................2111.0010000100
droYak3
ACCCGACCTGATGCGATACGAACATATTGTGGTTCAGTCCGAATCTTAAGGTGGCATC--CGG--------CC----ATTTCCCAAAGCCATTAGAACCATTCGCTGTAGCTGCTA-CGA-----TTGTAGACCGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGATAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------AC-AAAAT-GTTTT---------------------------------------------------------ATTTCCCAC-------T--T-------GC-----------------AGGAATCT-----------TAATTAACTTAAGCTAATGGTGCATCGGCATCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................AAGCTAAGCTT-CTCGAT--TGTCCTAGGA.........................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..................................................................................................................................................................................................................................................................................AAGAACGTTGTAAGCTT-T.................................................................................................................................................................................................................................................................................................................1811.00100000100000
......................................................................................................CGCTGTAGCTGCTA-CGA-----TTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..................................................................................................................TA-CGA-----TTGTAGACCGG-TGC------------AACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001000000
........................................................................................................................................................................................................................................TT-CTCGAT--TGTCCTAGGAAGA......................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............................................................................................AGAACCATTCGCTGTAGCTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................AACGTTGTAAGCTT-TTAGACA...........................................................................................................................................................................................................................................................................................................2111.00101000000000
...........................................................................................................................................................................................................................................CTCGAT--TGTCCTAGGAAGATTTTATGCT.............................................................................................................................................................................................................................................................................................................................................2811.00100000010000
....................................................................................................................................................................................................................................................GTCCTAGGAAGATTTTATGCTCTT..........................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................TATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TT.......................................................................................................................................................................................2711.00101000000000
droEug1
ACCCGACCTCATGCGCTACGAACATATTGTGGTGCAATCTGAATCTTAGACCGGCGTC--CGG--------CC----ATTTCCCAAAGCCATTAGACCCATTCGCTGTAGCTGCTG-CTG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTTAACGCAAACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------TT-A-AGT-GTTTT---------------------------------------------------------ATTTCCCCA-------T--T-------GC-----------------AGGAATCT-----------TATTTGACTTAAGCTAATGGTGCATCGGCGTCTASizeHit CountTotal NormTotal
No Reads
droBia1
GCCCGACCTGATGCGCTACGAACAGGTTGTGGTGCAGTCCGAATCTTAGAGCGGCGTC--CGG--------CC----ATTATCCAAAGCCATTAGACCCCTTCGCTGTAGCTGCTA-CGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTA------AACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAA--------TC-TTAGT-GTTTT---------------------------------------------------------ATTTCCCCT-------T--C-------GC-----------------AGGAAGCT-----------TATCTAACTTAGGCTAAAGGCGCATCGGCATCCASizeHit CountTotal NormTotal
No Reads
droTak1
GCCCGACCTGATGCGCTACGAACAGATTGTGGTGCAGTCCGAATCTTA-------------------------------------AAGCCATTAGAACCCTTCGCTGTAGCTGCTT-CGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGTAAACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTTTTTAGACAC-----TCCGTT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAA--------TC-GTAGA-GTTTT---------------------------------------------------------ATTTCCCCT-------TT-T-------CC-----------------AGGAAGCT-----------TATCGAACTTAGGCTAAGGGTGCATCGGCATCCASizeHit CountTotal NormTotal
No Reads
droEle1
GCCCGACCTCATGCGCTACGAGCATATAGTGGTGCAGTCCGAATCTTAGAGCTGCGTC--CG-CCCATTTGCC----ATTTCCCAAAGCCATAGAACCCATTCGCTGTAGCTGCTG-GGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGG-AAAGCTAAGCTT-CTCGAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATTATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------TAG-GG-------TTTCAAA--------AC-AAATTAGTTTTATTTCCCCCTTCAAACGTGTTTTTTAAATCATAT-----------------TG-----------AT-------ATTCTTTTTA-----------------------AGGCT-----------TATTTAACTTAAGCTAGTGGTGCATCGGCATCGASizeHit CountTotal NormTotal
No Reads
droRho1
GCCCGACCTGATGCGCTACGAGCATATAGTGGTGCAGTCCGAATCTTAGAGCTGCGTC--CGG--------CC----ATTTTCCAAAGCCATAGAACCCATTCGCTGTAGCTGCTA-GGG-----TTGCAGACTGG-TGC------------AACGA---------------------ATTTTAAACGCAAACTGCA--------------------GAGG-AAAGCTAAGCTT-CTCTAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCAAA--------AAGGATAGTTGCTAATTATATCTCGTTATT--TCCACTCCCCCTTTAA---------------------------------TAG-GG-------TTTCAAA--------TC-AGAGC-GTTTTATTTCCCTCTCTAAAAGTGTT--TTAAATCTTAG-----------------TGTTTTATTTC---------------------------------------------------------------------TAGGCTAGAGGTGCATCGGCATCGASizeHit CountTotal NormTotal
No Reads
droFic1
GCCCGACCTAATGCGCTACGAGCACATTGTGGTGCAGTCCGAATCTTAGGACGGCTTC--CGG--------CC----ATTTTGAAAAGCCATAGAACCCACTCGCTGTAGCAGCTAACGG-----TTGCAGACCGG-TGC------------AACGA---------------------ATTTTTAACGCAAACTGCA--------------------GAGGAAAAGCTAAGCTT-CTCGAT--TATCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTAAGCTT-TTAGACAC-----TCCGAT--------AAGGATAGTTGCTAATAATATCTCGTTATT--TTCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAA--------TT-GAAGT-GTTTT---------------------------------------------------------ATTTTCCGT-------T--C-------GT-----------------AGGAAGCT-----------GAACTAACTTAAGCTAAAGGTGCATCGGCATCAASizeHit CountTotal NormTotal
No Reads
droKik1
GCCCGACCTAATGCGCTATGAGCACGTGGTGGTGCAGTCCGAGTCCTAGAGGAACCC----------------------------------------CCAATCGCTGTAGCTGCTA-TAG-----TTGCAGACTCT-TGC------------AACGA---------------------ATTTTAACCGTAAACTGCG--------------------GAGGAAAAGCTAAGCTT-CTCAATACTGTCCTAGGAAGATTTTACGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACACGCCACTCCGAT--------GAGGATAGTTGCTAATAATATCTCGTTATT--TCCTCTCCCCCTCTAA---------------------------------AAG-GG-------TTTCAAC--------TACACCGT-CTTTT---------------------------------------------------------ATTT------------T--T-------GCAGCATGTAA--AAC---GGGAG-CAGAAGCTAATC----CTCACCTAAACTAGAGGTGCGTCCGCATCGASizeHit CountTotal NormTotal
No Reads
droAna3
GCCCGACCTGATGCGATACGAGCACGTGGTGGTGCAGTCTGAGTCTTAGGACGACGCT--CC-TCGATGGGCGAGTGATTACCAAAAGCCATAGAAACTGTACGCCGTAGCTGCTA-A-G-----TTGCAGACCTG-TGC------------AACGA---------------------ATTTTAAATGCAAACTGCA--------------------GAGAAAAAGCTAAGCTT-CTCGAA--TGTCCTAGGATGATTTTACGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAC-----GCCGAA--------GAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAT--------TC-AGATT-GTTTTATTTCCCT--------------------------------------------------------CG-------CT-A-------AT-----------------GGGAA-CAG----------GTGTTAATTTAAACTAATGGTGCATCGGCATCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................ATATCTCGTTATT--TCCACTCCC..............................................................................................................................................................................................................................................2211.001100000
......................................................................................................CGCCGTAGCTGCTA-A-G-----TTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
................TACGAGCACGTGGTGGTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............GATACGAGCACGTGGTGGTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
........TGATGCGATACGAGCACGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
GCCCGACCTGATGCGATACGAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................TGCA--------------------GAGAAAAAGCTAAGCTT-...........................................................................................................................................................................................................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................................GTCCTAGGATGATTTTACGCT.............................................................................................................................................................................................................................................................................................................................................2111.001010000
......................................CTGAGTCTTAGGACGACGCC--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................TATCTCGTTATT--TCCACTCC...............................................................................................................................................................................................................................................2011.001010000
......................................CTGAGTCTTAGGACGACGCT--CC-TCGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droBip1
CCCTGACCTGATGCGATACGAGCATGTGGTGGTGCAGTCAGAGTCTTAGAGCGATGCT--CCG--------CCAGTGATTACCAAAAGCCATAGAAACTGTACGCCGTAGCTGCTA-A-G-----TTGCAGACCTG-TGC------------AACGA---------------------ATTTTAAATGCAAACTGCA--------------------GAGAAAAAGCTAAGCTT-CTCGAA--TGTCCTAGGAAGATTTTACGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAC-----GCCGAA--------GAGGATAGTTGCTAATAATATCTCGTTATT--TCCACTCCCCCTCTAA---------------------------------CAG-GG-------TTTCAAT--------TC-GGATT-GTTTT---------------------------------------------------------ATTTCCCCA-------TT-A-------AT-----------------GGGAA-CAG----------GTGTTAGCTTAAGCTAATGGTGCATCGGCATCCASizeHit CountTotal NormTotal
No Reads
dp5
CCCCGACCTGATGCGCTATGAGCATATAGTTGTGCAAGCCGAGTCTTAGATTGACGCT---------------AGTGATTAG----------------CTGACGCAGTAGCTGCTAATAG-----TTGCCGAACTA-TGC------------AACGATTTTAGTTCGATTGAAGGAACATTTTAAACGCAAACTGCATTCACGTAA-----CCGATGGGGGGAAAGCTAAGCTT-CTCAAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAT-----GCCGAT-------GAAAGATAGTTGCTAAAAATATCTCGTTATT--TCCACTCCACCTCCAG---------------------------------AGCTGTTTTCAATTTTTGGTTGGGTTACGC-ATACT--TTTT---------------------------------------------------------ATTTCCATG-------CT-T-------AA-----------------AGGAA-CG-----------TCTATAGTTTAGACCAATGGTGCATCGGCGTCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................TAAAAATATCTCGTTATT--TCCACTCC...............................................................................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................GATTTTAGTTCGATTGAAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................AGTGATTAG----------------CTGACGCAGTAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGACCAATGGTGCATCGGC.....2111.0010100000000
.............................................................................................................................TTGCCGAACTA-TGC------------AACGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................CACGTAA-----CCGATGGGGGGAAAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................................................................................................................................................................................................TCACGTAA-----CCGATGGGGGGAA......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................GTTAAGAACGTTGTACGCTT-T.................................................................................................................................................................................................................................................................................................................2111.0010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAATGGTGCATCGGCGTC..2111.0010000001000
.....................................................................................................................................................................................................TTCACGTAA-----CCGATGGGG..........................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
............................................................................................................................................................................................CAAACTGCATTCACGTAA-----CCGATGGGG..........................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTTTAGACCAATGGTGC...........2111.0010100000000
droPer2
CCCCGACCTGATGCGCTATGAGCATATAGTTGTGCAAGCCGAGTCTTAGATTGACGCT---------------AGTGATTAG----------------CTGACGCAGTAGCTGCTAATAG-----TTGCCGAACTT-TGC------------AACGATTTTAGTTCGATTGAAGGAACATTTTAAACGCAAACTGCATTCACGTAA-----CCGATGGGGGGAAAGCTAAGCTT-CTCAAT--TGTCCTAGGAAGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAT-----GCCGAT-------GAAAGATAGTTGCTAAAAATATCTCGTTATT--TCCACTCCACCTCCAG---------------------------------AGCTGTTTTCAATTTTTGGTTAGGTTACGC-ATACT--TTTT---------------------------------------------------------ATTTCCATG-------CT-T-------AA-----------------AGGAA-CG-----------TCTATAGTTTAGACCAATGGTGCATCGGCGTCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................ATTTTAGTTCGATTGAAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
.......................................................................................................................................................................................AAACGCAAACTGCATTCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
.............................................................................................................................TTGCCGAACTT-TGC------------AACGATTTTAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
droWil2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCTAAGCTT-CTCACT--TGTCCTAGGAAGATTTTATGCTCTAGTTAATAAGAACGTTGTACGCTT-TTAGGCAG------CAAAC--------CGGGATAGTTGCTACAAATATTTCGTTTTTGTTCCACT------CTAAAACAAAAAAAAAACAAACAAAAAATTATACTAAATCAGT-------TTTCAAT---------C-T------------------------------------------AGTGAAACGCTAAACAATTTGTTTTATTTCCAAT-------CT-T--------------------------GGGAA-AAA----------AT----GCTCAGGCTAATGGGGCATCAGCATCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................GCAG------CAAAC--------CGGGATAGTTGC...........................................................................................................................................................................................................................................................................2112.00201010
................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGT-------TTTCAAT---------C-T------------------------------------------AGTGAA......................................................................................................................2111.00101000
.......................................................................................................................................................................................................................................CTT-CTCACT--TGTCCTAGGAAG.......................................................................................................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................................................................................................TAGTTGCTACAAATATTTCGTTTTT.........................................................................................................................................................................................................................................................2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................T-------TTTCAAT---------C-T------------------------------------------AGTGAAACGCT.................................................................................................................2111.00100010
...........................................................................................................................................................................................................................................................GAAGATTTTATGCTCTAGTTA......................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................................................................................................................................................TAATAAGAACGTTGTACGCTT-..................................................................................................................................................................................................................................................................................................................2111.00100010
......................................................................................................................................................................................................................................................CCTAGGAAGATTTTATGCTC............................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................................................................................................................................................................................................................T-CTCACT--TGTCCTAGGAAGAT.....................................................................................................................................................................................................................................................................................................................................................2111.00101000
..............................................................................................................................................................................................................................AAAGCTAAGCTT-CTCACT--TGT................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.............................................................................................................................................................................................................................................CACT--TGTCCTAGGAAGATTTT..................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................................................................................TTAATAAGAACGTTGTACGCT....................................................................................................................................................................................................................................................................................................................2111.00100010
...........................................................................................................................................................................................................................................CTCACT--TGTCCTAGGAAGATT....................................................................................................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................................................................TTAGGCAG------CAAAC--------CGGGATAG...............................................................................................................................................................................................................................................................................2111.00100001
.......................................................................................................................................................................................................................................................................................CGTTGTACGCTT-TTAGGCAG------C...................................................................................................................................................................................................................................................................................................2111.00100010
...............................................................................................................................................................................................................................................................................AATAAGAACGTTGTACGCTT-T.................................................................................................................................................................................................................................................................................................................2111.00100010
................................................................................................................................................................................................................................................................TTTTATGCTCTAGTTAATAAG.................................................................................................................................................................................................................................................................................................................................2111.00101000
...................................................................................................................................................................................................................................................................................................................AAAC--------CGGGATAGTTGCTACA.......................................................................................................................................................................................................................................................................2011.00101000
droVir3
GCCCGATCAGATGCGCTATGAGCACGTAGTGGTGCAGTCCGAAACATAGATCAATTA-TGCAG--------CC----TGTCCGAAAAACGATA---------------------------------------------AC------------AATTT---------------------ATTTCAATTGCGAATTGCATTAG-----CTTAGAT----AATGAAAAGCTAAGCTTCTTCACT--TATCCTAGGATGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAGCAAATGCCGAATA-----ATCGCATAGTTGCTAACGA---CTCGTTATT--TCCATTCACACT--AA---------------------------------AAA-C--------TTTTAAT--------T---------------------------------------------AGAGAAACGCTATGCAATTTGTTTTATTAACATGGTCGCCAGT-C-------AA-----------------AGAAA------------------AATTTTAAGTCAGCGGCGCATCTGCATCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................GTTAAGAACGTTGTACGCTT-T.................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000001000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TAGTTGCTAACGA---CTCGTTATT--TCCAT..................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.................ATGAGCACGTAGTGGTGCAGTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................TTGTTAAGAACGTTGTACGCT....................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TTAGAT----AATGAAAAGCTAAGC..............................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................TTCTTCACT--TATCCTAGGATG.......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AGTTGTTAAGAACGTTGTACG......................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................ATCGCATAGTTGCTAACGA---CT................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................CGCATAGTTGCTAACGA---CTCGTTAT..........................................................................................................................................................................................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................C--------TTTTAAT--------T---------------------------------------------AGAGAAACG...................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TCGTTATT--TCCATTCACACT--A........................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ACAGCAAATGCCGAATA-----ATC.....................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................T-TTAGACAGCAAATGCCGAAT..............................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................A---CTCGTTATT--TCCATTCAC..............................................................................................................................................................................................................................................1911.001000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................CTCGTTATT--TCCATTCACACT--.........................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CCGAATA-----ATCGCATAGTTGCT..........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................TAGTTGTTAAGAACGTTGTAC.......................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
...CGATCAGATGCGCTATGAGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................AGAT----AATGAAAAGCTAAGC..............................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................T----AATGAAAAGCTAAGCTTCTT.........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGTTTTATTAAC.............................................................................................16200.102000000000000000000000000000000000000000000000000000000020000000
droMoj3
GCCCGATCAGATGCGGTACGAGCACGTCGTGGTTCAGTCCGAAACATAGATCAA--------------------------------------------------------CAACTC-CAG-----TTGAAGAAAAG-ATC------------AATTT---------------------ATTTCAATTGCTAATTGCATTAG-----CTTAGAG----AATGAAAAGCTAAGCTTTTTCACT--TATCCTAGGATGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGAGAGCAAATGCCGAATA-----ATCGCATAGTTGCTAACGA---CTCGTTATT--TCCACTCACACT--AA---------------------------------AAA-C--------TTTTAAT--------T---------------------------------------------AGAGAAACGCTATGCAATTTGTTTTATTTACACA-------A------------------------------------------------AATCAAAGTTATGAAAGCGGCGCATCGGCATCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................ATT--TCCACTCACACT--AA---------------------------------AAA-C--------T........................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................GAACGTTGTACGCTT-TTAGAGAGC.........................................................................................................................................................................................................................................................................................................2411.001000001
.....ATCAGATGCGGTACGAGCACGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................................................................................................................................................TT--TCCACTCACACT--AA---------------------------------AAA-C--------T........................................................................................................................................................................................2111.001100000
droGri2
ACCCGACCAGATGCGCTATGAGCACGTTGTTGTGCAGTCTGAAACATAGATCAACTTC--AG---------C--------------------------CTGCTGCAGTAGCTTCTA-AGGATCTCTTGCAGTCCCAAAACAACAACAAAAACAAAT-------------------AATATTTTGATCGCAAATTGCAATTATGTAACTTAGAG----AATGAAAAGCAAAGCTTTCTCACT--TATCCTAGGATGATTTTATGCTCTAGTTGTTAAGAACGTTGTACGCTT-TTAGACAGCAAATGCTAAATATTAATAATGCATACTTGCTAAAGA---CTCGTTATT--TCCACTCACAC--TAA---------------------------------AAA-CT-------TTTTAAT--------T---------------------------------------------AGAGAAACGCTATGCAATCTGTTTTATTTTTTTT-------ATTCACATTATGCATTATGTGTGCAACTAAGG-------------------GGTAGATTAAGCCAATGGCGCATCCGCATCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------AAA-CT-------TTTTAAT--------T---------------------------------------------AGAGAAACGCT.................................................................................................................2611.00110
...........................................................................................................................................................................................................................................................................AGTTGTTAAGAACGTTGTACGC.....................................................................................................................................................................................................................................................................................................................2211.00110

Generated: 05/18/2015 at 07:56 PM