ID:

dsi_16466

 Coordinate:

3l:11282013-11282241 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_11282242_11282945_-]; CDS [3l_11282242_11282753_-]; exon [3l_11281836_11282012_-]; CDS [3l_11281836_11282012_-]; intron [3l_11282013_11282241_-]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron-
Hoana1DNAhAT-hobo+
MINIME_DNUnknownUnknown-

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACATCGTTAGTAACAACCATTACTTTCCATCTGAGCAGATCAATCGCAGGTGGGTGGTATGTGTAGTCATAAGTATATATTTATACTCATTCCACCATATAATATATGTATGGTATAGTTCGTCTGTCTGTCCGTTTATCTGTCTGTCCGTAAGTTTGTCCGTTTGTCTGTCCGTTTCTACGCAAGTTAGTCTCTTAGTTTGAAAACTATCTGCATGAAATTAAATTATATTGAGGTATATGAAGCTGGCTCTAATTCTAGTTTAAAATATTTTGTAGATATGGAAAGCCCTTTGATCGATCTAATACCTATGGAGTTTTGCAAGGCG
**************************************************...(((((...(((.(((.((((((....)))))))))))).))))).....(((.(((.((((.((((.........)))))))).))).)))..............................(((((...((.((.((((.((.......))..)))).))))..)))))...........(((((((...(((((((........)))))))...)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................................................................................................TATTGCGGTAGATGAAGCTG................................................................................ 20 2 1 2.00 2 2 0 0 0
...................................................................................................................................................................................................................................................AAGCTGGCTCTATGTCTCGTT................................................................. 21 3 2 0.50 1 0 0 0 1
..................................AGCAGATCAATCGCA........................................................................................................................................................................................................................................................................................ 15 0 2 0.50 1 0 0 1 0
...........................................................................................................................................................................................................AAAACTGTCTGAATGAAATTATATT..................................................................................................... 25 3 2 0.50 1 0 0 1 0
...............................CTGAGCAGATCAATCGC......................................................................................................................................................................................................................................................................................... 17 0 2 0.50 1 0 1 0 0
.................................GAGCAGATCAATCGC......................................................................................................................................................................................................................................................................................... 15 0 4 0.25 1 0 1 0 0
................................TGAGCAGATCAATCGC......................................................................................................................................................................................................................................................................................... 16 0 4 0.25 1 0 1 0 0
.............................................................................................................................TGTCTGTCCGTTTTTCTG.......................................................................................................................................................................................... 18 1 8 0.13 1 0 1 0 0
............................................................................................................................................................................................................AAGCTATCTGAATGAAATT.......................................................................................................... 19 2 9 0.11 1 0 1 0 0
...................................................TGCGTGGTATGTGTA....................................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0
............................................................................................................................................................................................................................................................................................................AACTAATAACTATGGAGATT......... 20 3 13 0.08 1 0 0 0 1
..........................................................................................................................................................................................GTCAGTCTCTTAGTCT............................................................................................................................... 16 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTGTAGCAATCATTGTTGGTAATGAAAGGTAGACTCGTCTAGTTAGCGTCCACCCACCATACACATCAGTATTCATATATAAATATGAGTAAGGTGGTATATTATATACATACCATATCAAGCAGACAGACAGGCAAATAGACAGACAGGCATTCAAACAGGCAAACAGACAGGCAAAGATGCGTTCAATCAGAGAATCAAACTTTTGATAGACGTACTTTAATTTAATATAACTCCATATACTTCGACCGAGATTAAGATCAAATTTTATAAAACATCTATACCTTTCGGGAAACTAGCTAGATTATGGATACCTCAAAACGTTCCGC
**************************************************...(((((...(((.(((.((((((....)))))))))))).))))).....(((.(((.((((.((((.........)))))))).))).)))..............................(((((...((.((.((((.((.......))..)))).))))..)))))...........(((((((...(((((((........)))))))...)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 M024
male body		 M023
head
........................................................................................................................................AATAGACAGACAGGCATACAAACAGACAT.................................................................................................................................................................... 29 3 1 1.00 1 1 0 0 0 0 0
....................................................................................ATGAGTAAGGCCGTAT..................................................................................................................................................................................................................................... 16 2 20 0.15 3 0 3 0 0 0 0
.............................................................................TATATAGATGCGTAAGGTGG........................................................................................................................................................................................................................................ 20 3 15 0.13 2 1 0 0 0 1 0
................................................................................................................................................................GGCAGACAGACAGCCAAAG...................................................................................................................................................... 19 2 14 0.07 1 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................TCTATCCCTGTCGGGAAG.................................. 18 3 20 0.05 1 0 0 0 0 0 1
....................................................................................ATTACTAAGGTAGTATATTA................................................................................................................................................................................................................................. 20 3 20 0.05 1 0 0 1 0 0 0
....................................................................................ATGAGTAAGGTAGTAG..................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:11281963-11282291 - dsi_16466 CACATCGTTAGTAACAACCATTACTTTCCATCTGAGCAGATCAATCGCAGGTGGGTGGTATGTGTAG--TCA----------TAAGTATATATTT-------------------------------------------------------ATACTC----------------------------------ATTC------------------------------------------CAC---------CATATAATA----T-----------------------------------------------------------------------------------------------------------ATGTATGGTAT-----------------------AGTTCGTC----TGTCTGTCCGTTTATCTGTCTGTCCGTAAGTTTG----TCCGTTTGTCTGTC------------------------------------------------CGTTTCTACGCAAGTTAGTCTCTTAGTTTGAAAACTATCTGCATGAAATTAAATTATATTG-AG----------------------------------GTATATGA----------------A------------GCTGGCTCTAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTAAAATATTTTGTAGATATGGAA-AGCCCTTTGATCGA---TCTAATACCTATGGAGTTTTGCAAGGCG
droSec2 scaffold_0:3761224-3761577 - CACATCGTTAGTAACAACCATTACTTTCCATCTGAGCAGATCAATCGCAGGTAAGTTGTATGTTTATAGTCATG-------ATAAGTATATATTTATACCCTTGC-GAGGGTATT-TGATTTCA------------------------------------------------------------------------------------------------------------------CTTGCTACAATATATAATA----T-----------------------------------------------------------------------------------------------------------ATGT----TAT-----------------------AGTTCGCC----TGTCCGTCCGTTTATCTGTCTGTCCGTATGTTTG----TCCGTTTGTCTGTC------------------------------------------------CGTTTCTACGCAAGTTAGTCTCTTAGTTTAAAAACGATCTGCATGAAATTAAATTTTATTG-GG----------------------------------GTATATAA----------------A------------GCTGGCTCTAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTCAAATATTTTGTAGATATGGAA-AGCCCTTTGATCGA---TCTAATACGTATGGAGTCTTGCAAGGCG
dm3 chr3L:11569068-11569487 - CACATCGTTAGTAACAACCATTACTTTCCATCTGAGCAGATCAATCGCAGGTGGGTAGTATGTTTATA--------------------------------------------------------GTATGTAGTATGTAGTTTATAGTATAGTATGTTTATA--GTGATAT---------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------------ATATATTATAGCGT-----------GATATATGTTTGGTAT-----------------------AGTTCGCC----TGTCCGTCCGTTTATCTGTCTGTCCGTATGTTTG----TCCTTATGTTTGTCCTTATGTTTGTCCGTATGTTTGTCCTTATGTTTGTCCGTCTGTCTGTCCGTTTCTACCAAAGTTAGTCTCTTAGTTTGAAAGCTATCTGCATGAAACT--------------------------TATGTGCTTATGTTTTCGTAGAGTATCTGA----------------A-------CTTCGGCTGTCTTTAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTTCAAATATTTTGTAGATACGATA-AGCCCTTTGATCGA---TTGAATACCTATGGAGTTTTGCAAGGCG
droEre2 scaffold_4690:17545698-17545871 + GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTA----TGTCCGTCCGTATGTCCGTAAGTCCGTATGTCCG----TCCGTATGTCCGTCCGTATGTCCGTATATCCG----------------------------TCCGTCTTTAGAAATGACCCCTT-------------CTTTCTGCATGCCAAAGCATTCAATTTACG----------------------------------CTGCAACG----------------A------------GGTCTCTCCAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTCAAAATATAACAAATATATG-------------------------------------------------
droYak3 3L:11596349-11596689 - CACATCATTAGTAACAACCATTACTTTCCCTCTGAGCAAATCAATCGCAGGTAGGTAGCATGTTCAGC---ATGTTTCAGTATTAG--------TATACCCGT---------------TTTTCAGTCAAAAGT-------TTGCAGAACA--------------------------------------------------------------------------------------------------------A-AT----TTAGTAGAGA------------------A---------------------------------------------------------------------------TACATACTTGATCA------------------------GTATGTC----CGTTTG------------------------TCCGTTTAATTGACTGTCCG------------------------------------------------TCCGTTTCTACGCAGGCTACTCTCTTACTCTTAAAACTATCAGCATGAAACT--------------------------TTTATTTATACATTTTTCAAG----------------------------------------------------ATTATAATGGTAAAT-------------------ACTTA----------------------------------------------------------------------------------------------------------------------------------TAGTTTTGAATATTTTGTAGATATAAAA-AGCCCTTTGATCGA---CTGGAAACCTTTGGAGTTTTGCAAGGCG
droEug1 scf7180000408164:1389-1550 + GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC----TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG----TCTGTCTGTCTGTCTGTC--------------------------------------------TGTCTGTCTGTCTGTCTGTCTGTCTGT---------ATTGATTTGAAATCGGA------AT-AAAA-------------------------------------------------------------------------------------TTTGGAAATT---------------------------------------------------------------------------------AAA-------------------------------------------------------------------CTGCCCCAGTTTATT-TATTCTTTAGCAATTAAA--AACT-------------------------------------GTT
droBia1 scf7180000302193:9008-9255 + CACATTGTCAGTAACAATCACTACTTTCCCTCGGAGCAGGTCAATCGCAGGTTGGTTGGGTGTTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CAAAAATA------ATGAATATATCTGAGG------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------ACGATAATAACCACT-------------------AGCACATAATATATTTTGATAAAATTGTATATCATAAATATTACATTTTACTTCGAATAAGATGC-----ACTT--------------------------------------------------------------AGTGGATTATTTTTTGTAGATATACTA-AATCATTTGATCGA---TCCGGGACCTTTGGAGCTTTGTTGGGCG
droTak1 scf7180000415858:95325-95562 - TTA-ATGTTAGTTAC------CGCTATCTATTTGAACAAATTAT--------------------------------------------------TATACCCTTGCAGAGGGTATTATGATTTCAGTCAGAAGCTTGCAACGCAGTGAAGAAGACGT----------------------------------TTCC------------------------------------------GAC---------CCTATAAAG--TAT--A-----------------------------------------------------------------------------------------------------TATATTCTTGATCAGCATGACTAGACGAGTCGATCTAGCAATGTC----AGTCTG------------------------TCCG----TCCGTCTGTCCG------------------------------------------------TTTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGCAATCGGGCTAAAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490564:2519866-2520198 - TACATCATTAGCCACAATCGTTACTTCCCATCGGAACAGATCAATCGCAAGTAGGTAGTCTATATCTT----------------------------------T---------------TGATCAGTTTTAATT-------TTAAACTTTA--------------------------------------------------------------------------------------------------------A-CT----ATAGATAAGC------------------TTACATTTTACAT---ACTTTTGATAGCGTTTAATAGCCTTTTATCCTCCATTATTTAAACCTTTTTCTTTAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAATTTTAAA--------------CTATATCTATAAG-ATAATCTTTGATTTTACATACTTTTGATAGCGTTGAAT----------------------------------------------------------------------ACCCTTTTATCCT---------------------------------------------------------------CC-----AATTT--------------------------------------------------------------GTAAACCTTTTTCTTTAGATATTCCC-AATCATTTGACCGC---AATTCCCCTTGTGGAGATTTCCATAGTC
droRho1 scf7180000778270:3321-3598 - CACATCATAAGCCACAATCACTACTTCCCTTCGGAGCAGATCAATCGCAAGTAGGTCGACTAATTGTA--------------------------------------------------------TTA---------------------------TT----CTTTTAACTACTATT---------------------------------------------------------------------------TATATTT----TCAATATAAA-CTCAATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CTGTTTCTATAAG-ATCATCTTAGATGGTACATAGTTTTTAATTAGTTTTTT----------------------------------------------------------------------ATTTTATTTACCT----------------------------------------------CTTAATTTTAGTATAATGCAAATAACTTT--------------------------------------------------------------GTAAGCCTTTTTCTTCAGATATACCC-AACCATTTGATCGA---AAATCGCCATGTGGATATATTCACAGCA
droFic1 scf7180000454113:3135740-3135982 + CACATCATCAGTAACAATCATTACTTTCCTTCTGAGCAGATCAATCGCAGGTTAGTTGAGTGTTTATT--------------------------------------------------------GTA----------------CAAAACA--------------------------------------------------------------------------------------------------------A-GT----CAATACAAACCTTAATTTATTGTTAATTTTAT-----AATAACAAGTTATGGTAAAGTTT--------------------------TACGTTTTTATTATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTAAATGTTTAA--------------TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG-----------------------------------------------------------------------ATATTATCTTTCAATCAGATATACCA-AGCCCTTCGATCGA---TCTGGAGTTTTTGGAATTCGTTTTGGCG
droKik1 scf7180000302391:1265016-1265333 + CGCATTGTCAGTCATAATCATTATTTTCCAGCGGAGAAGATTAATCGTGGGTGGGTTTAAAA----------------------------------------------------------------------------------------------------------GTTTATTTATGGTT--------------------------------------TTTGAGATGTTTTTCTGAC---------ACAAAAA-AT----AGAAATAAACCTTC---------------------------------------------------TCTTATATTTTTAAATATTTAAGAAT--------------------------AATATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTAAATTAAAAAG-AT----------------------------------ATAACTTATTCTGTTTTGCCAGAAAGTATGCAATTCTTTTATGTTA---------TT---ATTTTATGATTTAAATTTTTATCAC---------------------------------------------------------------AA-----ATTTT--------------------------------------------------------------AATAGCTTTTTATTTTAGATACACAA-AACCCTTTAATCCT---AAAGAAACCTTTGGCATATTACAAGGAG
droAna3 scaffold_13239:144092-144372 - GCA--------------------------------------------------GGTAGTACAT-------------------------------------------------------------------------------------------AA----GTCTAAATATTTATATATACTT----------------------------------------------------------------------TA----------A-----------------------------------------------------------------------------------------------------TATATTCCTAATCAAGATCACCTCCTGAGTCGATATATGCATGTC----CGTCTG------------------------TCCA----TCTGACCGACTG------------------------------------------------TCTGTTTCTAGTCAAACTAGTCTCTCAGTTTTAAAGCTATCGAGTTGAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAAACATCCTTATTTTGTTTGCAGGCAGTATA-------TAAGTCGGAACGGG----ATCGGTTGACTATATCCTATAGCTGCAATATAACTGATTGATTGAAAATGTCATAACTATGGTGTTTTTTAAG---
droBip1 scf7180000396575:117147-117329 + CGCAG---------------------------------------------GAAGGA-----------------------------------------------------------------------------------------------GACAT----------------------------------CTCC------------------------------------------GAC---------CCTATAAAG--TAT--A-----------------------------------------------------------------------------------------------------TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTC----CGTCTGTCCGTCTGTCCGTCTGTCCTTCTGTCCGTCTGTCCGTCTGTCTG------------------------------------------------TCTGTTTCTACGCGAACTAGTCTCTCAGTTTTAAAGCTATCGACTTGAAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:9476684-9476797 - GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTC----CGTCCGTCCGTCCGTCCGTCTGTCCGTTGGTCCG----TTCGTTTGACGGTC------------------------------------------------CGTTTCCT-ACAAATTTGTCCATTCGATTGTTAAACAGCGAATGGAAATT-AACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTG
droPer2 scaffold_27:719022-719134 - GTCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGCC----TGTCTGTCCGTCTGACTGTCTGTCTGTATGTTTG----TCTGTATGTCTGTG------------------------------------------------TGTCTGTGTGTCTGTCTGTCTATCCGTTTGC---CTGTCTGCCTGTCATTTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droWil2 scf2_1100000004968:710699-710898 + TGTTG------------------------------------------------------ATGC-------------------------------------------------------------------------------------------T----------------T------------------ATT---------------------------------------------------------TATAATA----T-----------------------------------------------------------------------------------------------------------ATAT----AC----------------------TAGCCTTGTC----CGTCTGTCCGTCTGTCCGTCCGTCCGTCTGTTCG----TCCGTCCGTCTGTCAGCA--------------------------------------------TGA--ATACGC-----AGTCTCGGAG---------------------------------------------------------------------------------------------------------------------------ACTATGAAAGCTACA-------------------GCCACCAAATT--------------------------------------------------------------TGGTATAAAGATTCGTG-----------AAGTAT--------------GTAAAGGG--------ATCAAATTTATTTCGTATTTTTGCCA-CGCCCCTT-------------------------------------
droVir3 scaffold_12929:355298-355460 - GTGAA------------------------------------------------------ATGT------------------------------------------------------------------------GTAGCGCATATATGGAGACTT----------------------------------CTCC------------------------------------------GAC---------CCCATAAAGTGTAT--A-----------------------------------------------------------------------------------------------------TATATTCTTAATCAGCATCAACAGCCGAGTCGATAGAGCCATGTC----CGTCTG------------------------TCC------------GTCTG------------------------------------------------TCTGTTTCTATGCGAACTAGTCTCTTAGTTTTAAAGCTATCTTTATAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6442:46816-47032 + TAAGT------------------------------------------------------ATAT------TTT----------T-----------------------------------------------------------------------------A--GTTATAT----------TTTTATACTCATTCACGAAAGTGAATCAGTATATTGGTTTT------------------------------GTGAAA--------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGTCTTGCTGTCCGTCCGTCTGTCCGTCTGTCCGTCCGTCCG----TCTGTCCGTCTGTC------------------------------------------------CGTATGAACGCAATCTATTTCGGCGCTATTGAAGCTAGAGACTTGAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACACATACTCGTG-----------------------------------------------------------------------------TATATCTCCGA---TTTAAAATTTT-----------------
droGri2 scaffold_15203:2497511-2497640 + GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTC----TGTCTGTCCGTCTGTCTGTCCGTCCGTCTGTCCG----TCCGTCTGTCTGTCCGTC--------------------------------------------TGCCAGCCCATCATCATCATCATC------------ATTATCAAGAACAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------------------------ACAGCATTGTGTTAGTCC---TAGTTCTAGTTT--------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CACATCGTTAGTAACAACCATTACTTTCCATCTGAGCAGATCAATCGCAGGTGGGTGGTATGTGTAG--TCA----------TAAGTATATATTT-------------------------------------------------------ATACTC----------------------------------ATTC------------------------------------------CAC---------CATATAATA----T-----------------------------------------------------------------------------------------------------------ATGTATGGTAT-----------------------AGTTCGTC----TGTCTGTCCGTTTATCTGTCTGTCCGTAAGTTTG----TCCGTTTGTCTGTC------------------------------------------------CGTTTCTACGCAAGTTAGTCTCTTAGTTTGAAAACTATCTGCATGAAATTAAATTATATTG-AG----------------------------------GTATATGA----------------A------------GCTGGCTCTAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTAAAATATTTTGTAGATATGGAA-AGCCCTTTGATCGA---TCTAATACCTATGGAGTTTTGCAAGGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................AGCAGATCAATCGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000001000000000
...............................CTGAGCAGATCAATCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.50100000000001000000
.................................GAGCAGATCAATCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1540.25100000000001000000
................................TGAGCAGATCAATCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1640.25100000000001000000
droSec2
CACATCGTTAGTAACAACCATTACTTTCCATCTGAGCAGATCAATCGCAGGTAAGTTGTATGTTTATAGTCATG-------ATAAGTATATATTTATACCCTTGC-GAGGGTATT-TGATTTCA------------------------------------------------------------------------------------------------------------------CTTGCTACAATATATAATA----T-----------------------------------------------------------------------------------------------------------ATGT----TAT-----------------------AGTTCGCC----TGTCCGTCCGTTTATCTGTCTGTCCGTATGTTTG----TCCGTTTGTCTGTC------------------------------------------------CGTTTCTACGCAAGTTAGTCTCTTAGTTTAAAAACGATCTGCATGAAATTAAATTTTATTG-GG----------------------------------GTATATAA----------------A------------GCTGGCTCTAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTCAAATATTTTGTAGATATGGAA-AGCCCTTTGATCGA---TCTAATACGTATGGAGTCTTGCAAGGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CACATCGTTAGTAACAACCATTACTTTCCATCTGAGCAGATCAATCGCAGGTGGGTAGTATGTTTATA--------------------------------------------------------GTATGTAGTATGTAGTTTATAGTATAGTATGTTTATA--GTGATAT---------------------------------------------------------------------------------------------------------------------------------ATAT------------------------------------ATATATTATAGCGT-----------GATATATGTTTGGTAT-----------------------AGTTCGCC----TGTCCGTCCGTTTATCTGTCTGTCCGTATGTTTG----TCCTTATGTTTGTCCTTATGTTTGTCCGTATGTTTGTCCTTATGTTTGTCCGTCTGTCTGTCCGTTTCTACCAAAGTTAGTCTCTTAGTTTGAAAGCTATCTGCATGAAACT--------------------------TATGTGCTTATGTTTTCGTAGAGTATCTGA----------------A-------CTTCGGCTGTCTTTAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTTCAAATATTTTGTAGATACGATA-AGCCCTTTGATCGA---TTGAATACCTATGGAGTTTTGCAAGGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................TATATGTTTGGTAT-----------------------AGTTCGCC----TGTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATCGCAGGTGGGTAGTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTACTTTCCATCTGAGCAGATCAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TTTATA--------------------------------------------------------GTATGTAGTATGTACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCTCTTAGTTTGAAAGCT....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATCTGTCTGTCCGTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTTTATCTGTCTGTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTA----TGTCCGTCCGTATGTCCGTAAGTCCGTATGTCCG----TCCGTATGTCCGTCCGTATGTCCGTATATCCG----------------------------TCCGTCTTTAGAAATGACCCCTT-------------CTTTCTGCATGCCAAAGCATTCAATTTACG----------------------------------CTGCAACG----------------A------------GGTCTCTCCAATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTCAAAATATAACAAATATATG-------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CACATCATTAGTAACAACCATTACTTTCCCTCTGAGCAAATCAATCGCAGGTAGGTAGCATGTTCAGC---ATGTTTCAGTATTAG--------TATACCCGT---------------TTTTCAGTCAAAAGT-------TTGCAGAACA--------------------------------------------------------------------------------------------------------A-AT----TTAGTAGAGA------------------A---------------------------------------------------------------------------TACATACTTGATCA------------------------GTATGTC----CGTTTG------------------------TCCGTTTAATTGACTGTCCG------------------------------------------------TCCGTTTCTACGCAGGCTACTCTCTTACTCTTAAAACTATCAGCATGAAACT--------------------------TTTATTTATACATTTTTCAAG----------------------------------------------------ATTATAATGGTAAAT-------------------ACTTA----------------------------------------------------------------------------------------------------------------------------------TAGTTTTGAATATTTTGTAGATATAAAA-AGCCCTTTGATCGA---CTGGAAACCTTTGGAGTTTTGCAAGGCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTC----TGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTG----TCTGTCTGTCTGTCTGTC--------------------------------------------TGTCTGTCTGTCTGTCTGTCTGTCTGT---------ATTGATTTGAAATCGGA------AT-AAAA-------------------------------------------------------------------------------------TTTGGAAATT---------------------------------------------------------------------------------AAA-------------------------------------------------------------------CTGCCCCAGTTTATT-TATTCTTTAGCAATTAAA--AACT-------------------------------------GTTSizeHit CountTotal NormTotal
No Reads
droBia1
CACATTGTCAGTAACAATCACTACTTTCCCTCGGAGCAGGTCAATCGCAGGTTGGTTGGGTGTTATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CAAAAATA------ATGAATATATCTGAGG------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------ACGATAATAACCACT-------------------AGCACATAATATATTTTGATAAAATTGTATATCATAAATATTACATTTTACTTCGAATAAGATGC-----ACTT--------------------------------------------------------------AGTGGATTATTTTTTGTAGATATACTA-AATCATTTGATCGA---TCCGGGACCTTTGGAGCTTTGTTGGGCGSizeHit CountTotal NormTotal
No Reads
droTak1
TTA-ATGTTAGTTAC------CGCTATCTATTTGAACAAATTAT--------------------------------------------------TATACCCTTGCAGAGGGTATTATGATTTCAGTCAGAAGCTTGCAACGCAGTGAAGAAGACGT----------------------------------TTCC------------------------------------------GAC---------CCTATAAAG--TAT--A-----------------------------------------------------------------------------------------------------TATATTCTTGATCAGCATGACTAGACGAGTCGATCTAGCAATGTC----AGTCTG------------------------TCCG----TCCGTCTGTCCG------------------------------------------------TTTGTTTCTACGCAAACTAGTCTCTCAGTTTTAAAGCAATCGGGCTAAAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TACATCATTAGCCACAATCGTTACTTCCCATCGGAACAGATCAATCGCAAGTAGGTAGTCTATATCTT----------------------------------T---------------TGATCAGTTTTAATT-------TTAAACTTTA--------------------------------------------------------------------------------------------------------A-CT----ATAGATAAGC------------------TTACATTTTACAT---ACTTTTGATAGCGTTTAATAGCCTTTTATCCTCCATTATTTAAACCTTTTTCTTTAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTAAATTTTAAA--------------CTATATCTATAAG-ATAATCTTTGATTTTACATACTTTTGATAGCGTTGAAT----------------------------------------------------------------------ACCCTTTTATCCT---------------------------------------------------------------CC-----AATTT--------------------------------------------------------------GTAAACCTTTTTCTTTAGATATTCCC-AATCATTTGACCGC---AATTCCCCTTGTGGAGATTTCCATAGTCSizeHit CountTotal NormTotal
No Reads
droRho1
CACATCATAAGCCACAATCACTACTTCCCTTCGGAGCAGATCAATCGCAAGTAGGTCGACTAATTGTA--------------------------------------------------------TTA---------------------------TT----CTTTTAACTACTATT---------------------------------------------------------------------------TATATTT----TCAATATAAA-CTCAATTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------CTGTTTCTATAAG-ATCATCTTAGATGGTACATAGTTTTTAATTAGTTTTTT----------------------------------------------------------------------ATTTTATTTACCT----------------------------------------------CTTAATTTTAGTATAATGCAAATAACTTT--------------------------------------------------------------GTAAGCCTTTTTCTTCAGATATACCC-AACCATTTGATCGA---AAATCGCCATGTGGATATATTCACAGCASizeHit CountTotal NormTotal
No Reads
droFic1
CACATCATCAGTAACAATCATTACTTTCCTTCTGAGCAGATCAATCGCAGGTTAGTTGAGTGTTTATT--------------------------------------------------------GTA----------------CAAAACA--------------------------------------------------------------------------------------------------------A-GT----CAATACAAACCTTAATTTATTGTTAATTTTAT-----AATAACAAGTTATGGTAAAGTTT--------------------------TACGTTTTTATTATGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTAAATGTTTAA--------------TTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCG-----------------------------------------------------------------------ATATTATCTTTCAATCAGATATACCA-AGCCCTTCGATCGA---TCTGGAGTTTTTGGAATTCGTTTTGGCGSizeHit CountTotal NormTotal
No Reads
droKik1
CGCATTGTCAGTCATAATCATTATTTTCCAGCGGAGAAGATTAATCGTGGGTGGGTTTAAAA----------------------------------------------------------------------------------------------------------GTTTATTTATGGTT--------------------------------------TTTGAGATGTTTTTCTGAC---------ACAAAAA-AT----AGAAATAAACCTTC---------------------------------------------------TCTTATATTTTTAAATATTTAAGAAT--------------------------AATATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAATTAAATTAAAAAG-AT----------------------------------ATAACTTATTCTGTTTTGCCAGAAAGTATGCAATTCTTTTATGTTA---------TT---ATTTTATGATTTAAATTTTTATCAC---------------------------------------------------------------AA-----ATTTT--------------------------------------------------------------AATAGCTTTTTATTTTAGATACACAA-AACCCTTTAATCCT---AAAGAAACCTTTGGCATATTACAAGGAGSizeHit CountTotal NormTotal
No Reads
droAna3
GCA--------------------------------------------------GGTAGTACAT-------------------------------------------------------------------------------------------AA----GTCTAAATATTTATATATACTT----------------------------------------------------------------------TA----------A-----------------------------------------------------------------------------------------------------TATATTCCTAATCAAGATCACCTCCTGAGTCGATATATGCATGTC----CGTCTG------------------------TCCA----TCTGACCGACTG------------------------------------------------TCTGTTTCTAGTCAAACTAGTCTCTCAGTTTTAAAGCTATCGAGTTGAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAAACATCCTTATTTTGTTTGCAGGCAGTATA-------TAAGTCGGAACGGG----ATCGGTTGACTATATCCTATAGCTGCAATATAACTGATTGATTGAAAATGTCATAACTATGGTGTTTTTTAAG---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCAAACATCCTTATTTTG....................................................................................................................2720.501100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------TAAGTCGGAACGGG----ATCGGTTGACTAT...............................................................2830.331010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAACGGG----ATCGGTTGACTAT...............................................................2330.331010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATA-------TAAGTCGGAACGGG----ATC.........................................................................21200.051100000
droBip1
CGCAG---------------------------------------------GAAGGA-----------------------------------------------------------------------------------------------GACAT----------------------------------CTCC------------------------------------------GAC---------CCTATAAAG--TAT--A-----------------------------------------------------------------------------------------------------TATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTC----CGTCTGTCCGTCTGTCCGTCTGTCCTTCTGTCCGTCTGTCCGTCTGTCTG------------------------------------------------TCTGTTTCTACGCGAACTAGTCTCTCAGTTTTAAAGCTATCGACTTGAAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTC----CGTCCGTCCGTCCGTCCGTCTGTCCGTTGGTCCG----TTCGTTTGACGGTC------------------------------------------------CGTTTCCT-ACAAATTTGTCCATTCGATTGTTAAACAGCGAATGGAAATT-AACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTCTGTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.501001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTCTGTCCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.1520100100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCCGTCCGTCTGTCCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21140.1420200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTCCGTCTGTCCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23130.0810100000000
.TC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTC----CGTCCGTCCGTCCGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
droPer2
GTCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGCC----TGTCTGTCCGTCTGACTGTCTGTCTGTATGTTTG----TCTGTATGTCTGTG------------------------------------------------TGTCTGTGTGTCTGTCTGTCTATCCGTTTGC---CTGTCTGCCTGTCATTTTATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGTTG------------------------------------------------------ATGC-------------------------------------------------------------------------------------------T----------------T------------------ATT---------------------------------------------------------TATAATA----T-----------------------------------------------------------------------------------------------------------ATAT----AC----------------------TAGCCTTGTC----CGTCTGTCCGTCTGTCCGTCCGTCCGTCTGTTCG----TCCGTCCGTCTGTCAGCA--------------------------------------------TGA--ATACGC-----AGTCTCGGAG---------------------------------------------------------------------------------------------------------------------------ACTATGAAAGCTACA-------------------GCCACCAAATT--------------------------------------------------------------TGGTATAAAGATTCGTG-----------AAGTAT--------------GTAAAGGG--------ATCAAATTTATTTCGTATTTTTGCCA-CGCCCCTT-------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCCGTCCGTCTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2840.25100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCCGTCCGTCTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.13100100
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCCTTGTC----CGTCTGTCCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................C----------------------TAGCCTTGTC----CGTCTGTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05110000
.................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCTTGTC----CGTCTGTCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
droVir3
GTGAA------------------------------------------------------ATGT------------------------------------------------------------------------GTAGCGCATATATGGAGACTT----------------------------------CTCC------------------------------------------GAC---------CCCATAAAGTGTAT--A-----------------------------------------------------------------------------------------------------TATATTCTTAATCAGCATCAACAGCCGAGTCGATAGAGCCATGTC----CGTCTG------------------------TCC------------GTCTG------------------------------------------------TCTGTTTCTATGCGAACTAGTCTCTTAGTTTTAAAGCTATCTTTATAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...AA------------------------------------------------------ATGT------------------------------------------------------------------------GTAGCGCATATATGGAGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000100000000000000000000000000000
...AA------------------------------------------------------ATGT------------------------------------------------------------------------GTAGCGCATATATGGAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................AGTGTAT--A-----------------------------------------------------------------------------------------------------TATATTCTTAATCAGCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.55110000000000000000000000000000000000110000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTTAGTTTT..........................................................................................................................................................................................................................................................................................................................................................................2670.433001000000000000000000000100100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTTAGTTT...........................................................................................................................................................................................................................................................................................................................................................................2580.252000000000000000000000000001000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGCATCAACAGCCGAGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.204000000000000000000000000000000200020000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAACAGCCGAGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000000000000000000000000000000000010000200000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................ATATTCTTAATCAGCATCAACAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153000000000000000000000000000300000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGCGAACTAGTCTCTTAGTT............................................................................................................................................................................................................................................................................................................................................................................2480.131001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGAACTAGTCTCTTAGTT............................................................................................................................................................................................................................................................................................................................................................................2290.111000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTCTTAATCAGCATCAACAGCCGAGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAACAGCCGAGTCGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000000000000200000000000000000000000000000000000000
.................................................................................................................................................................................................C------------------------------------------GAC---------CCCATAAAGTGTAT--A-----------------------------------------------------------------------------------------------------TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CTTAATCAGCATCAACAGCCGAGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATGTC----CGTCTG------------------------TCC------------GTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGCCATGTC----CGTCTG------------------------TCC------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................T----------------------------------CTCC------------------------------------------GAC---------CCCATAAAGTGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................CTCC------------------------------------------GAC---------CCCATAAAGTGTAT--A-----------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TATATTCTTAATCAGCATCAACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATAGAGCCATGTC----CGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TCAACAGCCGAGTCGATAGAGCCATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000100000000000000000000000000000
droMoj3
TAAGT------------------------------------------------------ATAT------TTT----------T-----------------------------------------------------------------------------A--GTTATAT----------TTTTATACTCATTCACGAAAGTGAATCAGTATATTGGTTTT------------------------------GTGAAA--------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGTCTTGCTGTCCGTCCGTCTGTCCGTCTGTCCGTCCGTCCG----TCTGTCCGTCTGTC------------------------------------------------CGTATGAACGCAATCTATTTCGGCGCTATTGAAGCTAGAGACTTGAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACACATACTCGTG-----------------------------------------------------------------------------TATATCTCCGA---TTTAAAATTTT-----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTATTGAAGCTAGAGACTTGA..........................................................................................................................................................................................................................................................................................................................................................24200.153300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTATTGAAGCTAGAGACTT............................................................................................................................................................................................................................................................................................................................................................21200.102000002
......................................................................................................................................................................................................AAGTGAATCAGTATATTGGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-----------------------------------------------------------------------------TATATCTCCGA---TTTAAAA.....................20120.081100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTG-----------------------------------------------------------------------------TATATCTCCGA---TTTAAA......................25140.071010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCTGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.................................................................................................................................................................................................CACGAAAGTGAATCAGTATATTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTATTGAAGCTAGAGACTTGAA.........................................................................................................................................................................................................................................................................................................................................................25200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTATTTCGGCGCTATTGAAGCTAGA.................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.....................................................................................................................................................................................................AAAGTGAATCAGTATATTGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.......................................................................................................................................................................TAT----------TTTTATACTCATTCACGAAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTG-----------------------------------------------------------------------------TATATCTCCGA---TTTAAT......................25200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGCAATCTATTTCG..................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTTGCTGTCCGTCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
.....................................................................................................................................................................................TTTATACTCATTCACGAAAGTGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGACTTGAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACACAT..............................................................................................................................26200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGACTTGAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAACACA...............................................................................................................................25200.051000001
droGri2
GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTC----TGTCTGTCCGTCTGTCTGTCCGTCCGTCTGTCCG----TCCGTCTGTCTGTCCGTC--------------------------------------------TGCCAGCCCATCATCATCATCATC------------ATTATCAAGAACAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------------------------ACAGCATTGTGTTAGTCC---TAGTTCTAGTTT--------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 06:54 PM