dsi_16445

five_prime_UTR [x_7583241_7583404_-]; exon [x_7583241_7583404_-]; intron [x_7583405_7583817_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCAGCAACAGCGAATAAAAATCAAATTTGAAAGAAACCTGTCCGCATTATCTGTTTACATCCAAAGAGAGCAGCTGACGCCGCAGCTGTAAATTGGAGGGTGTGAAGTGAGGAAAACACGCGACCTGCTAACAGAATCATTTGTTATTTTTTCTTTTTTTGTTCTTGTAATACTAATAATCGTGAATTCAATTTCGATAGAAACACCCACACACCGACACACATCGCAACACCAAAAACATAAAAAGGAA ************************************************...(((((((((...((..(((((((......)))))))...))...)))))))))..((((((((...((.....))(((((((....)))))))..))))))))......................((((.((......)).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries	M023 head	M025 embryo	O001 Testis	SRR553485 Chicharo_3 day-old ovaries
..........................................................................TGACGCCGCAGCTGTAAATTGGAGGG......................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0	0
.............................................................................................TGGAGAGTGTGAAGAAAGGAAAA......................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................GGAGGCTTTGAAGTGAGGA.........................................................................................................................................	19	2	1	1.00	1	0	1	0	0	0	0	0	0
..........................................................................TGACGCCGCAGCTGTAAATTGGAGG.......................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	0	1	0	0
...............................................TATCTGTTTACATCCAAAGAGAGCAGC................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	1	0	0	0	0
..........................................................ATCCAAAGAGAGCAGCTG..............................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0
........................................TCCGCATTATCTGTTTACATCCAAAGAGA.....................................................................................................................................................................................	29	0	1	1.00	1	0	0	0	0	0	0	0	1
.....................................................................................................GTGAAGTGAGGAAAACACGCGACC.............................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................CCGACACACATCGCAACACCAA...............	22	0	1	1.00	1	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................AAACACCCACACACCGACAC..............................	20	0	1	1.00	1	0	0	1	0	0	0	0	0
..............................................................................................GGAGGCTTTGAAGTGAGGAC........................................................................................................................................	20	3	6	0.33	2	0	2	0	0	0	0	0	0
............................................................................................TTGGAGGCTTTGAAGTGAGGT.........................................................................................................................................	21	3	4	0.25	1	0	1	0	0	0	0	0	0
..................................................................................CAGCTCTAAATGGGAGGG......................................................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0	0
.................................................................................GCAGCTCTAAATGGGAGG.......................................................................................................................................................	18	2	5	0.20	1	0	0	0	1	0	0	0	0
...............................................................................................GAGGCTTTGAAGTGAGGA.........................................................................................................................................	18	2	6	0.17	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................GCTAGTAATCGTGAAT...............................................................	16	2	20	0.15	3	1	2	0	0	0	0	0	0
..............................................................................................GGAGGCTTTGAAGTGAG...........................................................................................................................................	17	2	15	0.13	2	0	1	0	1	0	0	0	0
..................................................................................CAGCTCTAAATGGGAGG.......................................................................................................................................................	17	2	9	0.11	1	1	0	0	0	0	0	0	0
................................................................................................AGGCTTTGAAGTGAGGA.........................................................................................................................................	17	2	12	0.08	1	0	1	0	0	0	0	0	0
............................................................................................................................................................................CTAGTAATCGTGGATT..............................................................	16	2	20	0.05	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................TTTTAGATCTTGTAATA..............................................................................	17	2	20	0.05	1	1	0	0	0	0	0	0	0

GGTCGTTGTCGCTTATTTTTAGTTTAAACTTTCTTTGGACAGGCGTAATAGACAAATGTAGGTTTCTCTCGTCGACTGCGGCGTCGACATTTAACCTCCCACACTTCACTCCTTTTGTGCGCTGGACGATTGTCTTAGTAAACAATAAAAAAGAAAAAAACAAGAACATTATGATTATTAGCACTTAAGTTAAAGCTATCTTTGTGGGTGTGTGGCTGTGTGTAGCGTTGTGGTTTTTGTATTTTTCCTT ************************************************...(((((((((...((..(((((((......)))))))...))...)))))))))..((((((((...((.....))(((((((....)))))))..))))))))......................((((.((......)).))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR553488 RT_0-2 hours eggs
.........................................................................................................................................................AAAAAAACAACAGCATTATGATTAA........................................................................	25	3	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................AAAAAAGAAAAAAACTAGAA....................................................................................	20	1	2	0.50	1	1	0	0	0	0	0	0
..........................................................................................................................................................AAAAAGCAAGAGCAGTATGA............................................................................	20	3	18	0.39	7	0	7	0	0	0	0	0
...AGTTGTCGGTTATTTTTAGGTTAA...............................................................................................................................................................................................................................	24	3	3	0.33	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................GTGTGGCTGTTTGTAG.........................	16	1	3	0.33	1	0	0	1	0	0	0	0
..............................................................................................................................................CAATGAAAAAAAAAAAATCAAGAAC...................................................................................	25	3	3	0.33	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................GGGTGTGTGGCTGTGG.............................	16	1	20	0.30	6	0	0	6	0	0	0	0
..........................................................................................................................................................AAAAAACAAGAGCAGTATGAG...........................................................................	21	3	10	0.20	2	0	2	0	0	0	0	0
.........................................................................................................................................................AAAAAAGCAAGAGCAGTATGA............................................................................	21	3	5	0.20	1	0	1	0	0	0	0	0
..............................................................................................................CCTCTTGGGCGCTGGA............................................................................................................................	16	2	20	0.15	3	0	0	3	0	0	0	0
...................................................................................................................................................................................................................................TTGAGGTTTTTGTAGTTTTTCT.	22	3	7	0.14	1	0	0	0	0	1	0	0
........................................................................................................................................................AAAAAAAACAAGAGCAGTATGA............................................................................	22	3	9	0.11	1	0	1	0	0	0	0	0
..........................................................................................................................................................AAAAATCAACAACATTATG.............................................................................	19	2	10	0.10	1	0	0	0	0	0	1	0
........................................................................................................................................................................................TTAAGTTAAAGCGATC..................................................	16	1	13	0.08	1	0	0	0	0	0	0	1
..............................................................................................................................................................................................................GGTGTGTGGCTGTGG.............................	15	1	20	0.05	1	0	0	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	x:7583355-7583604 -	dsi_16445	CCAGCAACAGCGAATAA--AAA-T-CA--AA--------TTTGAAAGA-AACCTGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TGGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATTTTT--TCTTTT-------TTTGTTCTTGTAATACT------------------------------------------AATAATCGTGAA-------TTCAATTTCGATAGAAA--CACCCACACACCGACACACATCGCAA-----------------C---ACCAAAAACATAAAAAGGAA
droSec2	scaffold_44:95773-96022 -		CCAGCAACAGCGAATAA--AAA-T-CA--AA--------TTTGAAAGA-AACCTGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TGGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATTTTT--TCTTTT-------TTTGTTCTTGTAATAAT------------------------------------------AATAATCGTGAT-------TTCAATTTCGATAGAAA--CACCCACACACCAACACACATCGCAA-----------------C---ACCAAAAACATAAAAAGGAA
dm3	chrX:8009564-8009813 -		CCAGCAACAGCGAATAA--AAA-T-CC--AA--------TTTGAAAGAAAACCAGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACT-----------GAATCATTTGTTATT---TTTCTTTT-------TTTGTTCTTGTAATACT------------------------------------------AATAATCGTGAA-------TTCAATTTCGATAGAAA--CACACACACACCAACACACATCGCAA-----------------C---ACCAAAAACATAATAAGGAA
droEre2	scaffold_4690:10380006-10380252 -		CCAGCAACAGAGAAACA--AAA-T-CA--AA-------ATTT-AAAGA-AACCTGTCTGC-----------------------------------------------------------------------ATTATCTGTTTACATTCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAGAT------TGGTGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATT---TT--TTTT-------TTTGTTCTTGTAATACC------------------------------------------AATAATCGTGAA-------TTTGATTTCGATAGCAA--TATCCACACATCTAACCACATCGCAA-----------------C---ACCAAAAACATATAAAGGAA
droYak3	X:13300601-13300850 +		CCAGCAACAGAGAAAAA--AAA-T-CA--AA-------ATTTGAAAGA-AACCTGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATT---TTTCTTTT-------TTTGTTCTTGTAATACT------------------------------------------AATAATCGTGAT-------TTCGATTTCGATAGAAG--TACCCACACATCTGCACACACCGCAA-----------------C---ACCAATAACATATAAAGGTA
droEug1	scf7180000409064:88275-88522 -		AA------------AAA--AAG-T-CA--AACATTTTTTTTTGAA---AAACCTGTCCGC-----------------------------------------------------------------------AATA-CTGTTTACATCTAAAGAGAGAGAGAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCAGCTAATA-----------TAATCATTTGTTATT---TTACATTT-------TTTGTTCTTGTAATAATAA--T----------------------------------GATAATAATTGTGAA-------TTTAATTTCAATAGAAA--TACACACACAACCAAACACATACCAA-----------------T---AACAA--------AAAGGAA
droBia1	scf7180000302041:282264-282533 +		AA-----CTA-----AAACAAA-TAGAAAAGCATCCGTTTTTGAA---AAACTTGTCCGC-----------------------------------------------------------------------AATATCTGTTTACATTTAAG---AGAGCGAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAACGTTT-TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCCGCTAATG-----------CAATCATTTGTTATT---TT--ATTT-------TTTGTTCTTGTAATAATCA----------------------------------------AGTAATCGTGAC-------TTCGATTTCGATAGAAA--TACACACACACCCACCCACCCA-----CGCACAGACACGGTGTCAGCAACAA---AAT--AAAGGAG
droTak1	scf7180000415141:81898-82158 -		ACA------------AAA--AACGGCA--T--------ATTCGAA---AAACCTGTCCGC-----------------------------------------------------------------------AATATCTGTTTACATCTCAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT-GATT-TGGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTCTGCTAATATAATGATAATCACTTGTTATT---TT--ATTT-------TTTGTTCTTGTAATAATAA----------------------------------------ACTAATCGTGAA-------TTCGATTTCGATAGAAA--CAACCACACACACACACACCTA-----CACAC-GACACGGTGTCAGCAACAA---AAT--AAAGGAA
droEle1	scf7180000491006:1515196-1515431 -		CTA------------AAAAAGA-AAGAA-TG-------ATTTGAA---GAACCTGTC-GC-----------------------------------------------------------------------AATATCTGTTTACA-----A--------GAG--------AGCAGCTGACG---CCGC---CGCCGCAGCTGTAAAT---TA-TTGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCAAACA-----------TAATCATTTGTTTTCATTTT--TTTT-------TTAATTTTTGTAACAAT------------------------------------------AATAATTGTGGT-------TTCGATTTCGATAGAAAATCATCCACAC----------ACCGCAGAC---------------CAACAGCAA---AACA-AAAGGAA
droRho1	scf7180000763611:203253-203474 +		A-----ACTG-----AAA-AAA-TACA--A--------ATTTGAA---GAACCTGTC-GC-----------------------------------------------------------------------AATATATGTTTACA-----A--------GGG--------AGCAGCTGACG---CCGC---CGCCGCAGCTGTAAAT---TTG-AGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------TAATCATTTGTTTTTATT-T--TTTT---------T-------AAAAATT------------------------------------------AATAAACGTGGT-------TTCGATTCCGATAGAAA--TACAC-----------CACACCGCATAC---------------CACCAACAA---AACA-AAAGGCA
droFic1	scf7180000454077:1988023-1988239 +		CAA------------A----GA-TAGAA-A--------ATT-------------------------------------------------------------------------------------------CTATCTGTTTACA-----A--------GAG--------AGCAGCTGATGACGCCGCTGCTGCTGCAGCTGTAAAA---TTGTAGAGG------------G--TGT--GAAGTGAGGA-----------------------AAAACACGCGACCTGCAAATA--------------ACAATTGATATT---TT--ATTTGTTTTTTT-TTAATTTGCAATATA-A----------------------------------------AATAATTGTGCA-------TTTGGTTTCGATAGAAA--TATACAC------------ACCGCA------------------CAGCAACAA---AATA-AAAGGAA
droAna3	scaffold_13335:807841-808169 +		CCTG---------------------------------------------------TC-GC---AATTGCACATCCATCATCTCCCCTCTCTCCACCCCCGCCAC-A-CCATATTATATCCGCCATATAATAAATATCTGTTTACA-----A--------GAGCAGCCCCCAGCAGCTGACG---CCGC---AATCGCAGCTGTAAAA---AAG-GAAGGAAAATCCCAAAAGAGAGACGAAAGGGGGGATAAACCATACAAGAAAA-AAAGAAAAACACGCGACCTGTCCCGCA----------CA--TTTTTGTGTTTTTT-T--ATTTGTGAATATATGATTTAGCCAAATT--ATCTAAAAAAAAAAAGAGCTATCTATCAGAAAGAGCCCCCGAAAATCGTGCA-------TCGGGA-------------------------------------------------------------------AAATTGAAAAGTG
droBip1	scf7180000396006:61207-61511 +		CCTG---------------------------------------------------TC-GCACCAATTGCACATCCATCATCTCGCCG----CCACCCCC-CCACCAGCAATATTATATCCGACATATAAT-AATATCTGTTTACA-----A--------GAGCAGGC-CCAGCAGCTGACG---CCGC---AATCGCAGCTGTAAAA---AAG-GAAGGAAAATCCCAAAA-AGAGA--CCGCTGGGGATA-GCAATAAAAAAAAAAAAAAAAAAACACGCGACCTGCCCCGC-----------AAATTTTTTGTGTTTTTT-T--ATTG-TGAATATTTGATTTAGCAAGATT--AGCTAAAA----------------------AAGAGTCCA--CAAATCGTGAATCGTGAATA-AATTTTGTTGG--------------------------------------------------------------------GGAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CCAGCAACAGCGAATAA--AAA-T-CA--AA--------TTTGAAAGA-AACCTGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TGGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATTTTT--TCTTTT-------TTTGTTCTTGTAATACT------------------------------------------AATAATCGTGAA-------TTCAATTTCGATAGAAA--CACCCACACACCGACACACATCGCAA-----------------C---ACCAAAAACATAAAAAGGAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................TGACG---CC---------GCAGCTGTAAAT------TGGAGG------------G--...........................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................TGACG---CC---------GCAGCTGTAAAT------TGGAGG------------..............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................TATCTGTTTACATCCAAA--------GAG--------AGCAGC.....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................ATCCAAA--------GAG--------AGCAGCTG...................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------A..........................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GT--GAAGTGAGGA------------------------AAACACGCGACC........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACACACATCGCAA-----------------C---ACCAA...............	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--CACCCACACACCGACAC..................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CCAGCAACAGCGAATAA--AAA-T-CA--AA--------TTTGAAAGA-AACCTGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TGGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATTTTT--TCTTTT-------TTTGTTCTTGTAATAAT------------------------------------------AATAATCGTGAT-------TTCAATTTCGATAGAAA--CACCCACACACCAACACACATCGCAA-----------------C---ACCAAAAACATAAAAAGGAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................AT------TGGAGG------------G--TGT--GAAGTGAGGA------------------------AAA.................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
................................................................................................................................................ATCCAAA--------GAG--------AGCAGCTGAC.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0

dm3

CCAGCAACAGCGAATAA--AAA-T-CC--AA--------TTTGAAAGAAAACCAGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACT-----------GAATCATTTGTTATT---TTTCTTTT-------TTTGTTCTTGTAATACT------------------------------------------AATAATCGTGAA-------TTCAATTTCGATAGAAA--CACACACACACCAACACACATCGCAA-----------------C---ACCAAAAACATAATAAGGAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................TAGAGG------------G--TGT--GAAGTGAGGA------------------------A...................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0
.............................................................................................................................................................................................................AT------TAGAGG------------G--TGT--GAAGTGAG..............................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TCCAAA--------GAG--------AGCAGCTGACG---CC---------..................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................CAGCTGTAAAT------TAGAGG------------G--TGT--......................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GTTTACATCCAAA--------GAG--------AGCAGC.....................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................AGAGG------------G--TGT--GAAGTGAGGA------------------------A...................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................................GAGG------------G--TGT--GAAGTGAGGA------------------------....................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.............................................................................................................................................................................................................AT------TAGAGG------------G--TGT--GAAGTGAGG.............................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................AGCTGACG---CC---------GCAGCTGTAAAT------TAGA............................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------C---ACCAAAAACATAATAAG...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGAA-------TTCAATTTCG............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TACATCCAAA--------GAG--------AGCAGCT....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................AG--------AGCAGCTGACG---CC---------GCAGCT............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACCAACACACATCGCAA-----------------C---AC..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTCCGC-----------------------------------------------------------------------ATTATCTGTTTCA.....................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAA--CACACACACACCA......................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACACCAACACACATT.............................................	18	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CCAGCAACAGAGAAACA--AAA-T-CA--AA-------ATTT-AAAGA-AACCTGTCTGC-----------------------------------------------------------------------ATTATCTGTTTACATTCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAGAT------TGGTGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATT---TT--TTTT-------TTTGTTCTTGTAATACC------------------------------------------AATAATCGTGAA-------TTTGATTTCGATAGCAA--TATCCACACATCTAACCACATCGCAA-----------------C---ACCAAAAACATATAAAGGAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................TACATTCAAA--------GAG--------AGCAGCTGACG---C............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................................................AACCTGTCTGC-----------------------------------------------------------------------ATTATCTGT.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................GTAGAT------TGGTGG------------G--TGT--GAAGTGAGGA------------------------....................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................GAAGTGAGGA------------------------AAACACGCGACCTGC.....................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GGA------------------------AAACACGCGACCTGCTAACA-----------.....................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACACATCTAACCACATCGCAA-----------------C---ACC.................	29	1	1.00	1	0	0	0	0	1	0	0
...........................................AAAGA-AACCTGTCTGC-----------------------------------------------------------------------ATT...............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................GTAGAT------TGGTGG------------G--TGT--GAAGT.................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................AT------TGGTGG------------G--TGT--GAAGTGAGG.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................G---CC---------GCAGCTGTAGAT------TGGTGG------------G--TGT--......................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................GT--GAAGTGAGGA------------------------AAACACGCGACCTGC.....................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0

droYak3

CCAGCAACAGAGAAAAA--AAA-T-CA--AA-------ATTTGAAAGA-AACCTGTCCGC-----------------------------------------------------------------------ATTATCTGTTTACATCCAAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------GAATCATTTGTTATT---TTTCTTTT-------TTTGTTCTTGTAATACT------------------------------------------AATAATCGTGAT-------TTCGATTTCGATAGAAG--TACCCACACATCTGCACACACCGCAA-----------------C---ACCAATAACATATAAAGGTA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................GTTTACATCCAAA--------GAG--------AGCAG......................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................ACACGCGACCTGCTAACA-----------GAATC................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAT-------TTCGATTTCGATAGAA......................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACACATCTGCACACACCGCAA-----------------C---....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCGCAA-----------------C---ACCAATAAC...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAG--TACCCACACATCTGCAC..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................ATTTGAAAGA-AACCTGTCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TGTAAAT------TAGAGG------------G--TGT--GAAGTGAGGA------------------------A...................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACACATCTGCACACACCGCAA-----------------C---ACC.................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAA-----------------C---ACCAATAACATATAAAGGT.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGCTGTAAAT------TAGAGG------------G--TGT--......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCACACACCGCAA-----------------C---ACC.................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................G--TACCCACACATCTGCACACAC..............................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTAAAT------TAGAGG------------G--TGT--GAA...................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTAAAT------TAGAGG------------G--TGT--GAAGT.................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AA------------AAA--AAG-T-CA--AACATTTTTTTTTGAA---AAACCTGTCCGC-----------------------------------------------------------------------AATA-CTGTTTACATCTAAAGAGAGAGAGAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT------TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCAGCTAATA-----------TAATCATTTGTTATT---TTACATTT-------TTTGTTCTTGTAATAATAA--T----------------------------------GATAATAATTGTGAA-------TTTAATTTCAATAGAAA--TACACACACAACCAAACACATACCAA-----------------T---AACAA--------AAAGGAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA-----CTA-----AAACAAA-TAGAAAAGCATCCGTTTTTGAA---AAACTTGTCCGC-----------------------------------------------------------------------AATATCTGTTTACATTTAAG---AGAGCGAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAACGTTT-TAGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCCGCTAATG-----------CAATCATTTGTTATT---TT--ATTT-------TTTGTTCTTGTAATAATCA----------------------------------------AGTAATCGTGAC-------TTCGATTTCGATAGAAA--TACACACACACCCACCCACCCA-----CGCACAGACACGGTGTCAGCAACAA---AAT--AAAGGAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACA------------AAA--AACGGCA--T--------ATTCGAA---AAACCTGTCCGC-----------------------------------------------------------------------AATATCTGTTTACATCTCAA--------GAG--------AGCAGCTGACG---CC---------GCAGCTGTAAAT-GATT-TGGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTCTGCTAATATAATGATAATCACTTGTTATT---TT--ATTT-------TTTGTTCTTGTAATAATAA----------------------------------------ACTAATCGTGAA-------TTCGATTTCGATAGAAA--CAACCACACACACACACACCTA-----CACAC-GACACGGTGTCAGCAACAA---AAT--AAAGGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTA------------AAAAAGA-AAGAA-TG-------ATTTGAA---GAACCTGTC-GC-----------------------------------------------------------------------AATATCTGTTTACA-----A--------GAG--------AGCAGCTGACG---CCGC---CGCCGCAGCTGTAAAT---TA-TTGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCAAACA-----------TAATCATTTGTTTTCATTTT--TTTT-------TTAATTTTTGTAACAAT------------------------------------------AATAATTGTGGT-------TTCGATTTCGATAGAAAATCATCCACAC----------ACCGCAGAC---------------CAACAGCAA---AACA-AAAGGAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A-----ACTG-----AAA-AAA-TACA--A--------ATTTGAA---GAACCTGTC-GC-----------------------------------------------------------------------AATATATGTTTACA-----A--------GGG--------AGCAGCTGACG---CCGC---CGCCGCAGCTGTAAAT---TTG-AGAGG------------G--TGT--GAAGTGAGGA------------------------AAACACGCGACCTGCTAACA-----------TAATCATTTGTTTTTATT-T--TTTT---------T-------AAAAATT------------------------------------------AATAAACGTGGT-------TTCGATTCCGATAGAAA--TACAC-----------CACACCGCATAC---------------CACCAACAA---AACA-AAAGGCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAA------------A----GA-TAGAA-A--------ATT-------------------------------------------------------------------------------------------CTATCTGTTTACA-----A--------GAG--------AGCAGCTGATGACGCCGCTGCTGCTGCAGCTGTAAAA---TTGTAGAGG------------G--TGT--GAAGTGAGGA-----------------------AAAACACGCGACCTGCAAATA--------------ACAATTGATATT---TT--ATTTGTTTTTTT-TTAATTTGCAATATA-A----------------------------------------AATAATTGTGCA-------TTTGGTTTCGATAGAAA--TATACAC------------ACCGCA------------------CAGCAACAA---AATA-AAAGGAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CCTG---------------------------------------------------TC-GC---AATTGCACATCCATCATCTCCCCTCTCTCCACCCCCGCCAC-A-CCATATTATATCCGCCATATAATAAATATCTGTTTACA-----A--------GAGCAGCCCCCAGCAGCTGACG---CCGC---AATCGCAGCTGTAAAA---AAG-GAAGGAAAATCCCAAAAGAGAGACGAAAGGGGGGATAAACCATACAAGAAAA-AAAGAAAAACACGCGACCTGTCCCGCA----------CA--TTTTTGTGTTTTTT-T--ATTTGTGAATATATGATTTAGCCAAATT--ATCTAAAAAAAAAAAGAGCTATCTATCAGAAAGAGCCCCCGAAAATCGTGCA-------TCGGGA-------------------------------------------------------------------AAATTGAAAAGTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................CTGACG---CCGC---AATCGCAGCTG...........................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................AAAGAGCCCCCGAAAATCGT................................................................................................	20	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................A-----A--------GAGCAGCCCCCAGCAGCTGT..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
..................................................................................................CGCCAC-A-CCATATTATATCCG............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................A-AAAGAAAAACACGCGACCTGTCCC..................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................CAAAAGAGAGACGAAAGGG................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................GAGACGAAAGGGGGGATA..........................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................AAAA-AAAGAAAAACACGC............................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................AATATCTGTTTACA-----A--------GAGC..................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................GAAAATCGTGCA-------TCGGGA-------------------------------------------------------------------A............	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAGCCCCCGAAAATCG.................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CTATCTATCAGAAAGAGCCCC..........................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CCGAAAATCGTGCA-------TCGGGA-------------------------------------------------------------------.............	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AAA-AAAGAAAAACACGCG...........................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AATCGTGCA-------TCGGGA-------------------------------------------------------------------AAATTGAA.....	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................AGAGACGAAAGGGGGGATAAACCAT....................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................ACGAAAGGGGGGATAAACC......................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................GTTTACA-----A--------GAGCAGCCCCCAGC........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................TCTATCAGAAAGAGCCCCCG........................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................CAGCTGTAAAA---AAG-GAAGGAA........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTGCA-------TCGGGA-------------------------------------------------------------------AAATTGAAAAGTT	27	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................GAAAA-AAAGAAAAACACA.............................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0

droBip1

CCTG---------------------------------------------------TC-GCACCAATTGCACATCCATCATCTCGCCG----CCACCCCC-CCACCAGCAATATTATATCCGACATATAAT-AATATCTGTTTACA-----A--------GAGCAGGC-CCAGCAGCTGACG---CCGC---AATCGCAGCTGTAAAA---AAG-GAAGGAAAATCCCAAAA-AGAGA--CCGCTGGGGATA-GCAATAAAAAAAAAAAAAAAAAAACACGCGACCTGCCCCGC-----------AAATTTTTTGTGTTTTTT-T--ATTG-TGAATATTTGATTTAGCAAGATT--AGCTAAAA----------------------AAGAGTCCA--CAAATCGTGAATCGTGAATA-AATTTTGTTGG--------------------------------------------------------------------GGAG	Size	Hit Count	Total Norm	Total
No Reads

dsi_16445

x:7583405-7583554 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.3	-28.3	-28.3