ID:

dsi_16426

 Coordinate:

3r:17400790-17400859 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.5 -9.4 -9.4

Flybase annnotation

exon [3r_17400164_17400789_+]; CDS [3r_17400164_17400789_+]; CDS [3r_17400860_17401186_+]; exon [3r_17400860_17401296_+]; intron [3r_17400790_17400859_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------##################################################
TCAATGAGTTTGAGTTCTCCTGGCAGAAGATAGCTGATATTCAACTGCAGGTGGGTGCTTTTTCTTTCAGTTAAAATTGTAAGCTATGGATTAAGGTGATCTAATTCTTATCCGTTGCAGCTGGAGAAACTGATCGCCAAGAACTATTTCCTAAACCAGTCGGCCAAGGA
**************************************************................................((.((((((.((((.........)))))))))).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................TCAACTGCAGCTGGAGAAACTGATCGCC................................ 28 3 1 3.00 3 3 0 0 0 0 0 0 0
......................................................................................................................AGCTGGAGAAACTGATCGCCA............................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0
...........................................................................................................................................AGAACTATTTCCTAAACCAGTCGGCCAA... 28 0 1 1.00 1 0 0 0 0 0 1 0 0
..........TGAGTTCTCCTGGCAGAAGATAGCTG...................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................................................................................................TTTCCTAAACCAGTCGGCCA.... 20 0 1 1.00 1 0 0 0 0 0 0 1 0
......................................................................................................AATTCTTATCCGTTGCAG.................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................AACTGCAGCTGGAGAAACTGATCGCC................................ 26 3 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................ATTCTTATCCGTTGCAG.................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................TCCTAAACCAGTCGGCCAAG.. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................CTAAACCAGTCGGCCAAG.. 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................ACTGCAGCTGGAGAAACTGATCGC................................. 24 2 1 1.00 1 0 0 0 0 1 0 0 0
..............................TAGCTGATATTCAACTGCAGCTGGAG.................................................................................................................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0
....TAAGTTTGAGTTTTTCTGGCAGAAGA............................................................................................................................................ 26 3 1 1.00 1 0 0 0 0 1 0 0 0
.......................................................................................................................GCTGGAGAAACTGATC................................... 16 0 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................................................TCAACTGCAGCTGGAGAAACTGA..................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................................................................................CAGCTGGAGCAACTGCTCGC................................. 20 2 4 0.25 1 0 0 0 1 0 0 0 0
..........................................................................AATTGTAATCTATGGA................................................................................ 16 1 9 0.11 1 1 0 0 0 0 0 0 0
.TAATGAGATTGAGGTCTCC...................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0
............................................................................TTGTAATCTATGGAGTA............................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 1
..................................................................................................................TTGTAGCTGGAGAAA......................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

AGTTACTCAAACTCAAGAGGACCGTCTTCTATCGACTATAAGTTGACGTCCACCCACGAAAAAGAAAGTCAATTTTAACATTCGATACCTAATTCCACTAGATTAAGAATAGGCAACGTCGACCTCTTTGACTAGCGGTTCTTGATAAAGGATTTGGTCAGCCGGTTCCT
**************************************************................................((.((((((.((((.........)))))))))).))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................AGCGGTTCTGGATAAAGGAAT................ 21 2 1 1.00 1 1 0 0 0 0
........AAACTCACGAGGTCAGTCTT.............................................................................................................................................. 20 3 9 0.11 1 0 1 0 0 0
.............................................................................................................TAGGCAACATCGAACTC............................................ 17 2 10 0.10 1 1 0 0 0 0
..........................................................................................................................................................TGGACAGCCGGTTCC. 15 1 13 0.08 1 0 0 1 0 0
...................GACCGTCTCCTATCG........................................................................................................................................ 15 1 13 0.08 1 1 0 0 0 0
.....................................................................................................................................................GAATTTGGTGAGCCGGTT... 18 2 20 0.05 1 0 0 0 0 1
.................AGGAACGTCTCCTATCG........................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0

Generated: 04/23/2015 at 07:30 PM