ID:

dsi_16417

 Coordinate:

3r:10140345-10140494 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.6 -22.9

Flybase annnotation

CDS [3r_10140495_10140669_+]; exon [3r_10140495_10140669_+]; intron [3r_10139934_10140494_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCGGCTGTTGTCATCAATTTTTAGTTGATGCAATTCAAGCGACATTCTAACCTCAAAATCGACGGCTTTCCTATATACACACATGCAGCTGAGAGGGGATGTTTTGTCAGGGGGTGTGGCGGCGGTAAACAAGACTTGTGCTCTGATTTTACGCTGTAGAAGCGCCTTTATTAATCGCATTGCATTTGGAATCTTGCAGGACGTCTCCAAACTAACGCCTCTCTCACCGGAGGTCATCTCCCGACAGGC
*****************************************************...........................(((((....((((.((((....)))).))))...)))))((((((..(((..(((.......)))..)))..))))))....**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M025
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
................................................................................................................................................................................................................CAAACTAACGCCTCTGTCACCGGA.................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CAAACTAACGCCTCTCTCACCGGA.................. 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................TCAAAATCGACGGCTTTCC.................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGATTTTACGCTGTAGAA........................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................AATCGACGGCTTTCCTATATA............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................TTTACGCTGTAGAAGCGCC................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGACGTCTCCAAACTAACGCCTCTCTCAC...................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AACGACTCTCTCAACGGATGTC.............. 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTGTCACCGGAGGTCATCTCCCGA..... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................TTTTACGCTGTAGAAGCGCCT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTCTCCAAACTAACGCCTCTCT......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TGGTGTGGTGACGGTAAACAA..................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TATCACCGGAGGTCAT............ 16 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................GTAGGACGTCTCCAAGC..................................... 17 2 10 0.40 4 0 0 3 0 0 0 0 0 1 0 0
...................................................................................................................................................TTTTAGTCTGTAGAAGCTCCT.................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................ACGCTGTAGATCCGCCTTTGTT............................................................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................ATTGTAGTCTGTAGAAGCG..................................................................................... 19 3 18 0.17 3 0 0 2 0 1 0 0 0 0 0 0
....................................................................................................................................TGACTTGTGCTCTGA....................................................................................................... 15 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................ATTCGGAATCTTGCACG................................................. 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................GGCGGCCGTAACCAAGACG................................................................................................................. 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GGGGATGTAGCCGCGGTAA......................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................GTTCGAATCTTGCAGGA................................................ 17 2 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................ATTCGGAATCTTGCACGCC............................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGGCCGACAACAGTAGTTAAAAATCAACTACGTTAAGTTCGCTGTAAGATTGGAGTTTTAGCTGCCGAAAGGATATATGTGTGTACGTCGACTCTCCCCTACAAAACAGTCCCCCACACCGCCGCCATTTGTTCTGAACACGAGACTAAAATGCGACATCTTCGCGGAAATAATTAGCGTAACGTAAACCTTAGAACGTCCTGCAGAGGTTTGATTGCGGAGAGAGTGGCCTCCAGTAGAGGGCTGTCCG
****************************************************************************************...........................(((((....((((.((((....)))).))))...)))))((((((..(((..(((.......)))..)))..))))))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................AAACCTTAGAACGTGCGGGAG............................................ 21 3 1 1.00 1 1 0 0 0 0
.................................TCAGTTCGCTGTAAG.......................................................................................................................................................................................................... 15 1 2 0.50 1 1 0 0 0 0
.....................................................................................................................................................................GGAATTAATTAGCGTAA.................................................................... 17 1 3 0.33 1 0 1 0 0 0
...............................................................GGCGAAAGGTTAGATGTGTGT...................................................................................................................................................................... 21 3 8 0.25 2 0 0 0 2 0
....................................................................................ACGTCGACCCTCCCCTAC.................................................................................................................................................... 18 1 5 0.20 1 0 0 1 0 0
...........................................................AGATGCCGAAGGGATA............................................................................................................................................................................... 16 2 20 0.20 4 3 1 0 0 0
.........................................................................................................................TCGCCCTTTGTTCTGA................................................................................................................. 16 2 20 0.20 4 0 4 0 0 0
...CCTACACCAGTAGTCAAAAAT.................................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0
.....................................................................................................................................................................GGAATTAATTAGCGT...................................................................... 15 1 20 0.15 3 0 2 0 0 1
....................................................................................................................................................................CGGAATTAATTAGCGT...................................................................... 16 1 9 0.11 1 0 1 0 0 0
......................................................................................................................................................................GAATTAATTAGCGTAA.................................................................... 16 1 16 0.06 1 0 1 0 0 0
......................................TCGCTGTATGATTGGT.................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 10:30 AM