ID:

dsi_16410

 Coordinate:

3l:7901151-7901300 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7901301_7901683_+]; exon [3l_7901301_7901683_+]; intron [3l_7896311_7901300_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAGTGCAGATAGCGCCAGACGTTAAAGCATATTCACAAAAATACATACATATACGAATATCTATATAATATTTGCACAGAGCTAAGGGGAAAATATGTCTCTGTACGCCACAAATTCCTCGCATTTTTCCGCCTGTGAGTCTCAGCCAGAAAATAACTCAACTTTCTATAATTGTATTCGTCTGTTGTTTGCACTGCAGGTTGTCAACAGCAGCAGCAGCACAACGACGCGGGTGGAGAAGAAGTCTCA
**************************************************...((((((((.............((...(((((.(((((((((.((((......................)))))))))).)))...)).))).)).(((((..........)))))......))))))))((((.((....)).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 GSM343915
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
............................................................................................................................................................................TTGTATCCGTCTGCTGTTT........................................................... 19 2 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................................................................................................AGCAGCAGCACAACGACGCGGGTGGA............ 26 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................AGCACAACGACGCGGGTGGAG........... 21 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................AGCAGCACAACGACGCGGGTGGT............ 23 1 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................................................................................................GACGCGGGTGGAGAAGAAG..... 19 0 1 1.00 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................CAGCACAACGACGCGGGTGGA............ 21 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................................................................TGTTTGAACTCCAGGTTGTCAG.......................................... 22 3 3 0.33 1 0 0 0 0 1 0
......................TTAAAGGATATTGACAAAAAAA.............................................................................................................................................................................................................. 22 3 14 0.14 2 0 0 0 2 0 0
...........................................................................................................................................................................................GTGTGAACTGCAGGTTG.............................................. 17 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GCTCACGTCTATCGCGGTCTGCAATTTCGTATAAGTGTTTTTATGTATGTATATGCTTATAGATATATTATAAACGTGTCTCGATTCCCCTTTTATACAGAGACATGCGGTGTTTAAGGAGCGTAAAAAGGCGGACACTCAGAGTCGGTCTTTTATTGAGTTGAAAGATATTAACATAAGCAGACAACAAACGTGACGTCCAACAGTTGTCGTCGTCGTCGTGTTGCTGCGCCCACCTCTTCTTCAGAGT
**************************************************...((((((((.............((...(((((.(((((((((.((((......................)))))))))).)))...)).))).)).(((((..........)))))......))))))))((((.((....)).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
.................................AGTGTTTTTATGTAT.......................................................................................................................................................................................................... 15 0 4 0.25 1 1 0
.........................................................................................................................................CCCAGAGTCGGTATTATAT.............................................................................................. 19 3 10 0.10 1 0 1

Generated: 04/24/2015 at 10:32 AM